FvH4_1g29240

Zinc finger (C3HC4-type RING finger) family protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
22050197 .. 22054621
4425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29240.t2

Sequence Viewer

Length: 1536 bp
ATGGGAAAGACTGAAGGAGAGCAGGGTTTGGGTTCTACTGTGGGCTCTGAGCCCTCATCGCGAAATGCAGCTGCTTGCTGTCCTTGGATTCGCACACTAATTGGACTCAGATGCCTTTTGTTTCTCTTTCTCTCTCTTGCTCTCTTCCTCTCTGCAATCTTCTGGTTGCCTCCGTTTCTTCAGTTTGCGGATCAGGGCGATCTGGATCTTGATCCCGTCTTCAGAGATCATCATATAGTAGCAAGTTTCAATCTTTTTAAGCCGGTTTCTTTGGTGGAGGATAATGTCTTGCAGCTTGAGGATAACATTTTTGATGAGATAGTCGCTCCGTCAACTAAAGTGGTTATCCTATCTGTGGAATCCTTAGATGGATCAAATCATTCAAATGTAACAAGAGTAGTATTTGGGGTTGATCCAGACCCAAAATCATCAAAGTTATTGCCAACTTCTCAAAGTTTGATCAGAGCATCTTTTGAATATCTGGTCACACACCAATCACTGAGCCTAAATACATCCTTGTTTGGGTCCACATCCTTTTTCGAGGTGCTAAAATTCCCAGGTGGAATTACCATAATTCCACCACAGAAAGCATTTCTTCTACAGAAAGTGCAAATCCTTTTCAATTTCACCTTAAACTTTTCCATCTATCAAATACAACTAAATTTCAATGACCTGAAAAGCCAACTGAAGTCGGGTTTACATCTAGCACCCTATGAGAACCTTTATGTTAGCTTGTCAAACTCTAAAGGTTCAACAGTAGCTGCCCCTACTACTGTTCAGTCATCTGTTCTACTGACCATTGGCAATACTCCTTCAATGCAAAGATTAAAACAACTGGCTCAAACCATCACACATTCTCATTCAAGAAACCTAGGCCTGAATAATACGGTGTTTGGTAAAGTCAAGCAAGTTCGTCTTTCATCTATTTTGCAACATTCGCTCAATGGTGGAGATGGCACTGCATGGTCACCTTCTCCTGCTCCATTGCCTCAGCCCCACCCCTACCATCACTCCCATCATCACCATCACCACCATCATCACCACCATCACAATTCCCCTCTAGCTCCTGCAATTTCACCTGCACCTGCAACGGGCAGTGGTCCACCCGCAAATTTTCAAGGTGCACCTGGACCAGTTAATCCTTCACCTAAACCATGGAAAACTATGCCTGCACCTGAGAGAAGTTGTGAAGCAAAGCCTCCCAGCTTCTGGTATGGTCGTAGAGGGAAGGCTGGAAAGCAGTCACATTTACCCCCTGCTGGTGCACCAGGTGTTTCTCCTCCCATCTTTGGTCCATCACCCCAAAAGCATGTACACCCTTCAGCACCCATTTCTCGTTCAGCACCAGCATCTAGTCCTTTGCCTCATGTGGTTTTTGCTCATGCTCTTCCGCCATCAAAGAGTGAATCAGATAGTAGCCATTCTTACGCAGGGCAATCACCTGGACCCTCGACATCAACATCAACTTCTGCAGCTCTTCTTCCTTGTGTTCATTGGGCATTACCACTATTCCTAGCTTTGGTATTACATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

512

Amino Acids

55.08

Weight (kDa)

9.11

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7036 PF23041 82 - 175 1.7e-27 Domain of unknown function (DUF7036)
DUF7036 PF23041 208 - 299 8.9e-23 Domain of unknown function (DUF7036)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1534
AarI CACCTGC 2 cut(s) 1087, 1093
Acc36I ACCTGC 2 cut(s) 1087, 1093
AccB7I CCANNNNNTGG 1 cut(s) 1209
AccII CGCG 1 cut(s) 61
AciI CCGC 3 cut(s) 188, 1107, 1391
AclWI GGATC 5 cut(s) 198, 206, 213, 379, 407
AcsI RAATTY 3 cut(s) 551, 661, 1111
AcuI CTGAAG 5 cut(s) 33, 164, 205, 707, 1305
AdeI CACNNNGTG 1 cut(s) 1271
AfaI GTAC 1 cut(s) 1314
AfiI CCNNNNNNNGG 7 cut(s) 355, 522, 1091, 1209, 1259, 1289, 1519
AgsI TTSAA 9 cut(s) 250, 384, 476, 622, 667, 753, 816, 864, 1118
AjnI CCWGG 4 cut(s) 556, 1126, 1267, 1441
AluBI AGCT 8 cut(s) 71, 295, 732, 761, 1064, 1206, 1475, 1517
AluI AGCT 8 cut(s) 71, 295, 732, 761, 1064, 1206, 1475, 1517
Alw21I GWGCWC 2 cut(s) 1126, 1267
Alw44I GTGCAC 2 cut(s) 1122, 1263
AlwI GGATC 5 cut(s) 198, 206, 213, 379, 407
AlwNI CAGNNNCTG 2 cut(s) 761, 1209
AoxI GGCC 1 cut(s) 874
ApaLI GTGCAC 2 cut(s) 1122, 1263
ApeKI GCWGC 5 cut(s) 68, 71, 292, 761, 1472
ApoI RAATTY 3 cut(s) 551, 661, 1111
AspA2I CCTAGG 1 cut(s) 871
AspS9I GGNCC 5 cut(s) 525, 1100, 1130, 1292, 1445
AsuHPI GGTGA 9 cut(s) 619, 960, 1013, 1019, 1031, 1068, 1137, 1290, 1431
AvaII GGWCC 5 cut(s) 525, 1100, 1130, 1292, 1445
AvrII CCTAGG 1 cut(s) 871
BaeGI GKGCMC 2 cut(s) 1126, 1267
BanII GRGCYC 2 cut(s) 47, 54
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 1126, 1267
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 5 cut(s) 58, 80, 304, 748, 1484
BciT130I CCWGG 4 cut(s) 558, 1128, 1269, 1443
BclI TGATCA 1 cut(s) 459
BfaI CTAG 5 cut(s) 704, 872, 1061, 1353, 1514
BfmI CTRYAG 2 cut(s) 599, 1470
BfuAI ACCTGC 2 cut(s) 1087, 1093
BisI GCNGC 5 cut(s) 69, 72, 293, 762, 1473
BlnI CCTAGG 1 cut(s) 871
BlsI GCNGC 5 cut(s) 70, 73, 294, 763, 1474
Bme1390I CCNGG 4 cut(s) 558, 1128, 1269, 1443
Bme18I GGWCC 5 cut(s) 525, 1100, 1130, 1292, 1445
BmgT120I GGNCC 5 cut(s) 525, 1100, 1130, 1292, 1445
BmiI GGNNCC 2 cut(s) 526, 1447
BmrFI CCNGG 4 cut(s) 558, 1128, 1269, 1443
BmsI GCATC 3 cut(s) 101, 476, 1358
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 317
BsaBI GATNNNNATC 2 cut(s) 204, 210
BsaJI CCNNGG 4 cut(s) 83, 556, 871, 1154
BsaXI ACNNNNNCTCC 2 cut(s) 995, 1025
Bsc4I CCNNNNNNNGG 7 cut(s) 355, 522, 1091, 1209, 1259, 1289, 1519
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 840, 1133
Bse3DI GCAATG 1 cut(s) 983
Bse8I GATNNNNATC 2 cut(s) 204, 210
BseBI CCWGG 4 cut(s) 558, 1128, 1269, 1443
BseDI CCNNGG 4 cut(s) 83, 556, 871, 1154
BseGI GGATG 2 cut(s) 512, 530
BseJI GATNNNNATC 2 cut(s) 204, 210
BseLI CCNNNNNNNGG 7 cut(s) 355, 522, 1091, 1209, 1259, 1289, 1519
BseMI GCAATG 1 cut(s) 983
BseMII CTCAG 5 cut(s) 39, 121, 491, 1004, 1167
BseNI ACTGG 2 cut(s) 840, 1133
BseRI GAGGAG 1 cut(s) 1269
BseSI GKGCMC 2 cut(s) 1126, 1267
BseXI GCAGC 5 cut(s) 58, 80, 304, 748, 1484
BseYI CCCAGC 1 cut(s) 1202
BsgI GTGCAG 2 cut(s) 1065, 1155
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 876
BsiHKAI GWGCWC 2 cut(s) 1126, 1267
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 7 cut(s) 355, 522, 1091, 1209, 1259, 1289, 1519
BsnI GGCC 1 cut(s) 876
Bsp1286I GDGCHC 4 cut(s) 47, 54, 1126, 1267
Bsp1407I TGTACA 1 cut(s) 1312
Bsp143I GATC 8 cut(s) 190, 199, 205, 211, 226, 371, 412, 459
Bsp19I CCATGG 1 cut(s) 1154
Bsp68I TCGCGA 1 cut(s) 61
BspACI CCGC 3 cut(s) 188, 1107, 1391
BspANI GGCC 1 cut(s) 876
BspCNI CTCAG 5 cut(s) 40, 120, 492, 1003, 1168
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 526, 1447
BspMAI CTGCAG 1 cut(s) 1474
BspMI ACCTGC 2 cut(s) 1087, 1093
BspPI GGATC 5 cut(s) 198, 206, 213, 379, 407
BspQI GCTCTTC 2 cut(s) 1392, 1482
BsrDI GCAATG 1 cut(s) 983
BsrFI RCCGGY 1 cut(s) 262
BsrGI TGTACA 1 cut(s) 1312
BsrI ACTGG 2 cut(s) 840, 1133
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 4 cut(s) 83, 556, 871, 1154
BssMI GATC 8 cut(s) 190, 199, 205, 211, 226, 371, 412, 459
BssT1I CCWWGG 3 cut(s) 83, 871, 1154
Bst2UI CCWGG 4 cut(s) 558, 1128, 1269, 1443
Bst4CI ACNGT 4 cut(s) 40, 757, 775, 889
Bst6I CTCTTC 3 cut(s) 149, 1392, 1482
BstAUI TGTACA 1 cut(s) 1312
BstC8I GCNNGC 2 cut(s) 76, 1170
BstDEI CTNAG 6 cut(s) 48, 107, 364, 500, 990, 1176
BstDSI CCRYGG 1 cut(s) 1154
BstEII GGTNACC 1 cut(s) 966
BstF5I GGATG 2 cut(s) 512, 530
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 8 cut(s) 193, 202, 208, 214, 229, 374, 415, 462
BstMBI GATC 8 cut(s) 190, 199, 205, 211, 226, 371, 412, 459
BstMWI GCNNNNNNNGC 2 cut(s) 58, 937
BstNI CCWGG 4 cut(s) 558, 1128, 1269, 1443
BstNSI RCATGY 1 cut(s) 1313
BstPI GGTNACC 1 cut(s) 966
BstSCI CCNGG 4 cut(s) 556, 1126, 1267, 1441
BstSFI CTRYAG 2 cut(s) 599, 1470
BstSLI GKGCMC 2 cut(s) 1126, 1267
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 5 cut(s) 58, 80, 304, 748, 1484
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 876
BtgI CCRYGG 1 cut(s) 1154
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 512, 530
BtsI GCAGTG 2 cut(s) 957, 1102
BtsIMutI CAGTG 3 cut(s) 497, 957, 1102
BtuMI TCGCGA 1 cut(s) 61
BveI ACCTGC 2 cut(s) 1087, 1093
Cac8I GCNNGC 2 cut(s) 76, 1170
CaiI CAGNNNCTG 2 cut(s) 761, 1209
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 5 cut(s) 525, 1100, 1130, 1292, 1445
CsiI ACCWGGT 1 cut(s) 1267
Csp6I GTAC 1 cut(s) 1313
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 5 cut(s) 963, 1155, 1310, 1367, 1382
CviQI GTAC 1 cut(s) 1313
DdeI CTNAG 6 cut(s) 48, 107, 364, 500, 990, 1176
DpnI GATC 8 cut(s) 192, 201, 207, 213, 228, 373, 414, 461
DpnII GATC 8 cut(s) 190, 199, 205, 211, 226, 371, 412, 459
DraIII CACNNNGTG 1 cut(s) 1271
Eam1104I CTCTTC 3 cut(s) 149, 1392, 1482
EarI CTCTTC 3 cut(s) 149, 1392, 1482
EciI GGCGGA 1 cut(s) 1380
Eco130I CCWWGG 3 cut(s) 83, 871, 1154
Eco147I AGGCCT 1 cut(s) 876
Eco24I GRGCYC 2 cut(s) 47, 54
Eco47I GGWCC 5 cut(s) 525, 1100, 1130, 1292, 1445
Eco57I CTGAAG 5 cut(s) 33, 164, 205, 707, 1305
Eco91I GGTNACC 1 cut(s) 966
EcoO65I GGTNACC 1 cut(s) 966
EcoRII CCWGG 4 cut(s) 556, 1126, 1267, 1441
EcoT14I CCWWGG 3 cut(s) 83, 871, 1154
EcoT38I GRGCYC 2 cut(s) 47, 54
ErhI CCWWGG 3 cut(s) 83, 871, 1154
FaeI CATG 5 cut(s) 966, 1158, 1313, 1370, 1385
FalI AAGNNNNNCTT 4 cut(s) 579, 611, 900, 932
FatI CATG 5 cut(s) 962, 1154, 1309, 1366, 1381
FauI CCCGC 1 cut(s) 1114
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 5 cut(s) 69, 72, 293, 762, 1473
FokI GGATG 2 cut(s) 499, 517
FriOI GRGCYC 2 cut(s) 47, 54
Fsp4HI GCNGC 5 cut(s) 69, 72, 293, 762, 1473
FspBI CTAG 5 cut(s) 704, 872, 1061, 1353, 1514
GluI GCNGC 5 cut(s) 69, 72, 293, 762, 1473
GsaI CCCAGC 1 cut(s) 1206
HaeIII GGCC 1 cut(s) 876
HapII CCGG 1 cut(s) 263
Hin1II CATG 5 cut(s) 966, 1158, 1313, 1370, 1385
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HinfI GANTC 4 cut(s) 88, 105, 359, 1406
HpaII CCGG 1 cut(s) 263
HphI GGTGA 9 cut(s) 619, 960, 1013, 1019, 1031, 1068, 1137, 1290, 1431
Hpy166II GTNNAC 7 cut(s) 333, 528, 698, 1103, 1124, 1265, 1315
Hpy188I TCNGA 5 cut(s) 49, 110, 224, 464, 1411
Hpy188III TCNNGA 5 cut(s) 60, 203, 209, 416, 864
Hpy8I GTNNAC 7 cut(s) 333, 528, 698, 1103, 1124, 1265, 1315
HpyAV CCTTC 6 cut(s) 8, 822, 981, 1152, 1222, 1329
HpyCH4III ACNGT 4 cut(s) 40, 757, 775, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 937
HpyF3I CTNAG 6 cut(s) 48, 107, 364, 500, 990, 1176
Hsp92II CATG 5 cut(s) 966, 1158, 1313, 1370, 1385
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 8 cut(s) 190, 199, 205, 211, 226, 371, 412, 459
LguI GCTCTTC 2 cut(s) 1392, 1482
LmnI GCTCC 3 cut(s) 331, 985, 1069
Lsp1109I GCAGC 5 cut(s) 58, 80, 304, 748, 1484
LweI GCATC 3 cut(s) 101, 476, 1358
MabI ACCWGGT 1 cut(s) 1267
MaeI CTAG 5 cut(s) 704, 872, 1061, 1353, 1514
MaeIII GTNAC 4 cut(s) 388, 484, 966, 1242
MalI GATC 8 cut(s) 192, 201, 207, 213, 228, 373, 414, 461
MboI GATC 8 cut(s) 190, 199, 205, 211, 226, 371, 412, 459
MboII GAAGA 8 cut(s) 136, 151, 170, 211, 587, 1379, 1469, 1472
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 4 cut(s) 47, 54, 1126, 1267
MluCI AATT 9 cut(s) 99, 551, 564, 573, 622, 661, 1051, 1071, 1111
MlyI GAGTC 1 cut(s) 99
MseI TTAA 4 cut(s) 258, 632, 827, 1137
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 4 cut(s) 558, 1128, 1269, 1443
MvaI CCWGG 4 cut(s) 558, 1128, 1269, 1443
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 58, 937
NcoI CCATGG 1 cut(s) 1154
NdeII GATC 8 cut(s) 190, 199, 205, 211, 226, 371, 412, 459
NlaIII CATG 5 cut(s) 966, 1158, 1313, 1370, 1385
NlaIV GGNNCC 2 cut(s) 526, 1447
NmuCI GTSAC 3 cut(s) 484, 966, 1242
NruI TCGCGA 1 cut(s) 61
NspI RCATGY 1 cut(s) 1313
PaqCI CACCTGC 2 cut(s) 1087, 1093
PceI AGGCCT 1 cut(s) 876
PciSI GCTCTTC 2 cut(s) 1392, 1482
PfeI GAWTC 3 cut(s) 88, 359, 1406
PflMI CCANNNNNTGG 1 cut(s) 1209
PkrI GCNGC 5 cut(s) 70, 73, 294, 763, 1474
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 1534
Psp6I CCWGG 4 cut(s) 556, 1126, 1267, 1441
PspEI GGTNACC 1 cut(s) 966
PspFI CCCAGC 1 cut(s) 1202
PspGI CCWGG 4 cut(s) 556, 1126, 1267, 1441
PspN4I GGNNCC 2 cut(s) 526, 1447
PspPI GGNCC 5 cut(s) 525, 1100, 1130, 1292, 1445
PstI CTGCAG 1 cut(s) 1474
PstNI CAGNNNCTG 2 cut(s) 761, 1209
PsuI RGATCY 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 71
RruI TCGCGA 1 cut(s) 61
RsaI GTAC 1 cut(s) 1314
RsaNI GTAC 1 cut(s) 1313
RseI CAYNNNNRTG 1 cut(s) 384
SapI GCTCTTC 2 cut(s) 1392, 1482
SaqAI TTAA 4 cut(s) 258, 632, 827, 1137
SatI GCNGC 5 cut(s) 69, 72, 293, 762, 1473
Sau3AI GATC 8 cut(s) 190, 199, 205, 211, 226, 371, 412, 459
Sau96I GGNCC 5 cut(s) 525, 1100, 1130, 1292, 1445
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 4 cut(s) 558, 1128, 1269, 1443
SduI GDGCHC 4 cut(s) 47, 54, 1126, 1267
SexAI ACCWGGT 1 cut(s) 1267
SfaNI GCATC 3 cut(s) 101, 476, 1358
SfcI CTRYAG 2 cut(s) 599, 1470
SinI GGWCC 5 cut(s) 525, 1100, 1130, 1292, 1445
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 9 cut(s) 99, 551, 564, 573, 622, 661, 1051, 1071, 1111
SseBI AGGCCT 1 cut(s) 876
SsiI CCGC 3 cut(s) 188, 1107, 1391
SspMI CTAG 5 cut(s) 704, 872, 1061, 1353, 1514
StuI AGGCCT 1 cut(s) 876
StyD4I CCNGG 4 cut(s) 556, 1126, 1267, 1441
StyI CCWWGG 3 cut(s) 83, 871, 1154
TaaI ACNGT 4 cut(s) 40, 757, 775, 889
TaqI TCGA 2 cut(s) 540, 1451
TasI AATT 9 cut(s) 99, 551, 564, 573, 622, 661, 1051, 1071, 1111
TatI WGTACW 1 cut(s) 1312
TfiI GAWTC 3 cut(s) 88, 359, 1406
Tru1I TTAA 4 cut(s) 258, 632, 827, 1137
Tru9I TTAA 4 cut(s) 258, 632, 827, 1137
TscAI CASTG 3 cut(s) 504, 964, 1102
TseFI GTSAC 3 cut(s) 484, 966, 1242
TseI GCWGC 5 cut(s) 68, 71, 292, 761, 1472
Tsp45I GTSAC 3 cut(s) 484, 966, 1242
TspDTI ATGAA 2 cut(s) 909, 1481
TspGWI ACGGA 2 cut(s) 162, 318
TspRI CASTG 3 cut(s) 504, 964, 1102
Van91I CCANNNNNTGG 1 cut(s) 1209
VneI GTGCAC 2 cut(s) 1122, 1263
VpaK11BI GGWCC 5 cut(s) 525, 1100, 1130, 1292, 1445
XapI RAATTY 3 cut(s) 551, 661, 1111
XceI RCATGY 1 cut(s) 1313
XmaJI CCTAGG 1 cut(s) 871
XspI CTAG 5 cut(s) 704, 872, 1061, 1353, 1514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.