Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000840.1

Orthogroup ID

OG0010943

Physical Location & Seq

Genomic Coordinates Forward (+)

98378 .. 106706

Gene Structure 8329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000840.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

atgggaaagactgaaggagagcagggttcggtttccagtgccggctctgacccctcatcccaaaatgcagagactcactactgtccttgttggtatgataggaggattcggacactaattggcctcagatgcattttggttctctttctctctcttgctttgttcctctctgcaatgttctggttgcctccatttcttcagtttgcggatcacggcgatctggatcttgatccaaagttcagagatcattctatagtagcaagtttcaatcttcggaagccggtttctttgctggaggataatgtcttgcagcttgaagataacatttttgatgagatagttgctccgtcaactaaagtggttatcctatctctggaatccttagctggatcaaatgtaacaagagtcgtatttggggttgatcctgacccagaatcatcaaagttattgccaacttctcaaagtttgatcaaagaaaattttgaatatctggtcacaaaccaatcactgagcctaaatacatccttgtttgggtccacattccttttcgaggtgctaaaatttccagatggaattaccataattccaccacagaaagcgtttcttctgcagaaagtgcaaatccttttcaatttcaccttaaacttctctatctatcaaatacaactaaatttcaaagaactggaaagccagctgaagtctgggttacatctagcaccctatgagaacctttatgttagcttgtcaaattcaaaaggttcaacagtggcagcccctactactgttcagtcatatgttctattgacagttggcaatactccttcaatgcaaagattaaaacaactggctcaaaccatcacacattctcattcaagaaacctgggcctgaataatacggtatttggtagagtcaagcaagttcgtctttcatctattttgcaacattccctcaatggtggagatggcactgcgtggtcaccttctcctgctccattgcctcatccccaccgcccccatcacgcccaccatcaccatcaccaccaccatcgccatcaccacaattcccagctagctcctgcaatttcacctgcacctgcaactggcagtggtccacccgcaacgttcaaaggtgcacctggaccagctgatcattcacctgagccacacaaaagtatgcctgcacctgagaaaagttgtgaagcaaagcctcccagcttttggtctggtcgtagagggaaggctggaaagcagtctcgtttatcccctgccggcacaccagatgtttctcctcccgtctttggtacctcaccccaaaagcaagtacacccatcagcacccgtttctcgttcagtaccagcatctagtccgttgcctcatgtagtttttgctcatgttcttccgccatcaaagagtgaatcagatagtagccattcttacacagggcaatcacctggaccatcgccgtcaacattgccaccgtgggggggaatcgacgctagaggatgccacagggaggagcacacggaggaggcgaacaagctgaccaagtttcatggccagagatcgccagagctcggcggaaaagtcgggtcaaatcgtccagatccgagttgggtcgagcggctgattgagaacggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

546

Amino Acids

59.52

Weight (kDa)

8.48

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56590 AT3G56590
fragaria_vesca	FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240
prunus_persica	Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494681
rosa_laevigata	RLG00000022664
rosa_multiflora	Rmu_sc0000840.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390970
rosa_rugosa	Rorug03G0268000 Rorug03G0268000 Rorug03G0268000
rosa_samantha	Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400
rosa_wichuraiana	Rw3G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1096, 1102
Acc36I	ACCTGC	2 cut(s)	1096, 1102
Acc65I	GGTACC	1 cut(s)	1301
AccB1I	GGYRCC	1 cut(s)	1301
AccB7I	CCANNNNNTGG	1 cut(s)	1218
AccBSI	CCGCTC	1 cut(s)	1621
AciI	CCGC	6 cut(s)	206, 1009, 1116, 1400, 1578, 1621
AclI	AACGTT	1 cut(s)	1121
AclWI	GGATC	6 cut(s)	216, 224, 231, 397, 416, 1598
AcoI	YGGCCR	1 cut(s)	1555
AcsI	RAATTY	4 cut(s)	478, 560, 670, 748
AcuI	CTGAAG	3 cut(s)	33, 182, 716
AdeI	CACNNNGTG	1 cut(s)	972
AfaI	GTAC	3 cut(s)	1303, 1323, 1353
AjnI	CCWGG	3 cut(s)	879, 1135, 1450
Alw21I	GWGCWC	3 cut(s)	1135, 1521, 1575
Alw26I	GTCTC	2 cut(s)	65, 1257
Alw44I	GTGCAC	1 cut(s)	1131
AlwI	GGATC	6 cut(s)	216, 224, 231, 397, 416, 1598
AoxI	GGCC	3 cut(s)	121, 883, 1555
ApaLI	GTGCAC	1 cut(s)	1131
ApeKI	GCWGC	2 cut(s)	310, 770
ApoI	RAATTY	4 cut(s)	478, 560, 670, 748
Asp718I	GGTACC	1 cut(s)	1301
AspS9I	GGNCC	5 cut(s)	534, 883, 1109, 1139, 1454
AsuHPI	GGTGA	9 cut(s)	628, 969, 1022, 1028, 1046, 1077, 1146, 1299, 1440
AsuNHI	GCTAGC	1 cut(s)	1069
AvaII	GGWCC	4 cut(s)	534, 1109, 1139, 1454
BaeGI	GKGCMC	1 cut(s)	1135
BalI	TGGCCA	1 cut(s)	1557
BanI	GGYRCC	1 cut(s)	1301
BanII	GRGCYC	1 cut(s)	1575
Bbv12I	GWGCWC	3 cut(s)	1135, 1521, 1575
BbvI	GCAGC	2 cut(s)	322, 782
BceAI	ACGGC	2 cut(s)	229, 1447
BciT130I	CCWGG	3 cut(s)	881, 1137, 1452
BclI	TGATCA	2 cut(s)	468, 1147
BcoDI	GTCTC	2 cut(s)	65, 1257
BfaI	CTAG	4 cut(s)	713, 1070, 1362, 1497
BfmI	CTRYAG	2 cut(s)	252, 608
BfuAI	ACCTGC	2 cut(s)	1096, 1102
BisI	GCNGC	3 cut(s)	311, 771, 1622
BlsI	GCNGC	3 cut(s)	312, 772, 1623
Bme1390I	CCNGG	3 cut(s)	881, 1137, 1452
Bme18I	GGWCC	4 cut(s)	534, 1109, 1139, 1454
BmgT120I	GGNCC	5 cut(s)	534, 883, 1109, 1139, 1454
BmiI	GGNNCC	2 cut(s)	535, 1303
BmrFI	CCNGG	3 cut(s)	881, 1137, 1452
BmsI	GCATC	3 cut(s)	119, 1367, 1493
BmtI	GCTAGC	1 cut(s)	1073
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	2 cut(s)	382, 1158
BsaBI	GATNNNNATC	2 cut(s)	222, 228
BsaJI	CCNNGG	2 cut(s)	880, 1478
Bse118I	RCCGGY	3 cut(s)	41, 280, 1268
Bse1I	ACTGG	4 cut(s)	36, 687, 849, 1105
Bse3DI	GCAATG	3 cut(s)	180, 992, 1469
Bse8I	GATNNNNATC	2 cut(s)	222, 228
BseBI	CCWGG	3 cut(s)	881, 1137, 1452
BseDI	CCNNGG	2 cut(s)	880, 1478
BseGI	GGATG	4 cut(s)	56, 521, 1000, 1508
BseJI	GATNNNNATC	2 cut(s)	222, 228
BseMI	GCAATG	3 cut(s)	180, 992, 1469
BseMII	CTCAG	4 cut(s)	139, 500, 1149, 1176
BseNI	ACTGG	4 cut(s)	36, 687, 849, 1105
BseRI	GAGGAG	3 cut(s)	1278, 1529, 1541
BseSI	GKGCMC	1 cut(s)	1135
BseXI	GCAGC	2 cut(s)	322, 782
BseYI	CCCAGC	2 cut(s)	1065, 1211
BsgI	GTGCAG	2 cut(s)	1074, 1164
BshFI	GGCC	3 cut(s)	123, 885, 1557
BshNI	GGYRCC	1 cut(s)	1301
BsiHKAI	GWGCWC	3 cut(s)	1135, 1521, 1575
BsiSI	CCGG	3 cut(s)	42, 281, 1269
BsmAI	GTCTC	2 cut(s)	65, 1257
BsnI	GGCC	3 cut(s)	123, 885, 1557
Bsp1286I	GDGCHC	3 cut(s)	1135, 1521, 1575
BspACI	CCGC	6 cut(s)	206, 1009, 1116, 1400, 1578, 1621
BspANI	GGCC	3 cut(s)	123, 885, 1557
BspCNI	CTCAG	4 cut(s)	138, 501, 1150, 1177
BspLI	GGNNCC	2 cut(s)	535, 1303
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	2 cut(s)	1096, 1102
BspOI	GCTAGC	1 cut(s)	1073
BspPI	GGATC	6 cut(s)	216, 224, 231, 397, 416, 1598
BspT107I	GGYRCC	1 cut(s)	1301
BsrBI	CCGCTC	1 cut(s)	1621
BsrDI	GCAATG	3 cut(s)	180, 992, 1469
BsrFI	RCCGGY	3 cut(s)	41, 280, 1268
BsrI	ACTGG	4 cut(s)	36, 687, 849, 1105
BssAI	RCCGGY	3 cut(s)	41, 280, 1268
BssECI	CCNNGG	2 cut(s)	880, 1478
Bst2UI	CCWGG	3 cut(s)	881, 1137, 1452
Bst4CI	ACNGT	6 cut(s)	83, 766, 784, 808, 898, 1479
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstC8I	GCNNGC	5 cut(s)	43, 692, 1071, 1179, 1270
BstDEI	CTNAG	5 cut(s)	125, 382, 509, 1158, 1185
BstDSI	CCRYGG	1 cut(s)	1478
BstEII	GGTNACC	1 cut(s)	975
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	4 cut(s)	56, 521, 1000, 1508
BstMAI	GTCTC	2 cut(s)	65, 1257
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 616
BstNI	CCWGG	3 cut(s)	881, 1137, 1452
BstPI	GGTNACC	1 cut(s)	975
BstSCI	CCNGG	3 cut(s)	879, 1135, 1450
BstSFI	CTRYAG	2 cut(s)	252, 608
BstSLI	GKGCMC	1 cut(s)	1135
BstV1I	GCAGC	2 cut(s)	322, 782
BstX2I	RGATCY	2 cut(s)	223, 1603
BstYI	RGATCY	2 cut(s)	223, 1603
BsuRI	GGCC	3 cut(s)	123, 885, 1557
BtgI	CCRYGG	1 cut(s)	1478
BtgZI	GCGATG	2 cut(s)	1031, 1443
BtsCI	GGATG	4 cut(s)	56, 521, 1000, 1508
BtsI	GCAGTG	2 cut(s)	966, 1111
BtsIMutI	CAGTG	5 cut(s)	43, 506, 771, 966, 1111
BveI	ACCTGC	2 cut(s)	1096, 1102
Cac8I	GCNNGC	5 cut(s)	43, 692, 1071, 1179, 1270
Cfr10I	RCCGGY	3 cut(s)	41, 280, 1268
Cfr13I	GGNCC	5 cut(s)	534, 883, 1109, 1139, 1454
CseI	GACGC	1 cut(s)	1502
Csp6I	GTAC	3 cut(s)	1302, 1322, 1352
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	3 cut(s)	1376, 1391, 1553
CviQI	GTAC	3 cut(s)	1302, 1322, 1352
DdeI	CTNAG	5 cut(s)	125, 382, 509, 1158, 1185
DraIII	CACNNNGTG	1 cut(s)	972
EaeI	YGGCCR	1 cut(s)	1555
EciI	GGCGGA	2 cut(s)	1389, 1593
Ecl136II	GAGCTC	1 cut(s)	1573
Eco24I	GRGCYC	1 cut(s)	1575
Eco47I	GGWCC	4 cut(s)	534, 1109, 1139, 1454
Eco53kI	GAGCTC	1 cut(s)	1573
Eco57I	CTGAAG	3 cut(s)	33, 182, 716
Eco91I	GGTNACC	1 cut(s)	975
EcoICRI	GAGCTC	1 cut(s)	1573
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	975
EcoRII	CCWGG	3 cut(s)	879, 1135, 1450
EcoT22I	ATGCAT	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	1575
FaeI	CATG	3 cut(s)	1379, 1394, 1556
FalI	AAGNNNNNCTT	4 cut(s)	588, 620, 909, 941
FatI	CATG	3 cut(s)	1375, 1390, 1552
FauI	CCCGC	1 cut(s)	1123
FauNDI	CATATG	1 cut(s)	793
FbaI	TGATCA	2 cut(s)	468, 1147
Fnu4HI	GCNGC	3 cut(s)	311, 771, 1622
FokI	GGATG	4 cut(s)	43, 508, 987, 1515
FriOI	GRGCYC	1 cut(s)	1575
Fsp4HI	GCNGC	3 cut(s)	311, 771, 1622
FspBI	CTAG	4 cut(s)	713, 1070, 1362, 1497
GluI	GCNGC	3 cut(s)	311, 771, 1622
GsaI	CCCAGC	2 cut(s)	1069, 1215
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	123, 885, 1557
HapII	CCGG	3 cut(s)	42, 281, 1269
HgaI	GACGC	1 cut(s)	1502
Hin1II	CATG	3 cut(s)	1379, 1394, 1556
HincII	GTYRAC	2 cut(s)	351, 1467
HindII	GTYRAC	2 cut(s)	351, 1467
HinfI	GANTC	8 cut(s)	73, 106, 377, 405, 434, 909, 1415, 1488
HpaII	CCGG	3 cut(s)	42, 281, 1269
HphI	GGTGA	9 cut(s)	628, 969, 1022, 1028, 1046, 1077, 1146, 1299, 1440
Hpy166II	GTNNAC	6 cut(s)	351, 537, 1112, 1133, 1324, 1467
Hpy188I	TCNGA	7 cut(s)	49, 111, 128, 242, 276, 1420, 1608
Hpy188III	TCNNGA	7 cut(s)	221, 227, 374, 425, 566, 873, 1601
Hpy8I	GTNNAC	6 cut(s)	351, 537, 1112, 1133, 1324, 1467
Hpy99I	CGWCG	1 cut(s)	1496
HpyAV	CCTTC	4 cut(s)	8, 831, 990, 1231
HpyCH4III	ACNGT	6 cut(s)	83, 766, 784, 808, 898, 1479
HpyCH4IV	ACGT	1 cut(s)	1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 616
HpyF3I	CTNAG	5 cut(s)	125, 382, 509, 1158, 1185
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	3 cut(s)	1379, 1394, 1556
KpnI	GGTACC	1 cut(s)	1305
KroI	GCCGGC	2 cut(s)	41, 1268
KroNI	GCCGGC	2 cut(s)	43, 1270
Ksp22I	TGATCA	2 cut(s)	468, 1147
LmnI	GCTCC	4 cut(s)	349, 994, 1078, 1516
Lsp1109I	GCAGC	2 cut(s)	322, 782
LweI	GCATC	3 cut(s)	119, 1367, 1493
MaeI	CTAG	4 cut(s)	713, 1070, 1362, 1497
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	4 cut(s)	397, 493, 705, 975
MbiI	CCGCTC	1 cut(s)	1621
MboII	GAAGA	5 cut(s)	188, 263, 329, 596, 1388
MflI	RGATCY	2 cut(s)	223, 1603
MhlI	GDGCHC	3 cut(s)	1135, 1521, 1575
MlsI	TGGCCA	1 cut(s)	1557
MluNI	TGGCCA	1 cut(s)	1557
MlyI	GAGTC	3 cut(s)	67, 414, 918
Mox20I	TGGCCA	1 cut(s)	1557
Mph1103I	ATGCAT	1 cut(s)	134
MroNI	GCCGGC	2 cut(s)	41, 1268
MscI	TGGCCA	1 cut(s)	1557
MseI	TTAA	2 cut(s)	641, 836
Msp20I	TGGCCA	1 cut(s)	1557
MspA1I	CMGCKG	2 cut(s)	694, 1145
MspI	CCGG	3 cut(s)	42, 281, 1269
MspR9I	CCNGG	3 cut(s)	881, 1137, 1452
MvaI	CCWGG	3 cut(s)	881, 1137, 1452
MwoI	GCNNNNNNNGC	2 cut(s)	129, 616
NaeI	GCCGGC	2 cut(s)	43, 1270
NdeI	CATATG	1 cut(s)	793
NgoMIV	GCCGGC	2 cut(s)	41, 1268
NheI	GCTAGC	1 cut(s)	1069
NlaIII	CATG	3 cut(s)	1379, 1394, 1556
NlaIV	GGNNCC	2 cut(s)	535, 1303
NmeAIII	GCCGAG	1 cut(s)	1554
NmuCI	GTSAC	2 cut(s)	493, 975
NsiI	ATGCAT	1 cut(s)	134
PaqCI	CACCTGC	2 cut(s)	1096, 1102
PcsI	WCGNNNNNNNCGW	1 cut(s)	1529
PdiI	GCCGGC	2 cut(s)	43, 1270
PfeI	GAWTC	5 cut(s)	106, 377, 434, 1415, 1488
PflMI	CCANNNNNTGG	1 cut(s)	1218
PkrI	GCNGC	3 cut(s)	312, 772, 1623
PleI	GAGTC	3 cut(s)	67, 413, 917
PpsI	GAGTC	3 cut(s)	67, 413, 917
Psp124BI	GAGCTC	1 cut(s)	1575
Psp1406I	AACGTT	1 cut(s)	1121
Psp6I	CCWGG	3 cut(s)	879, 1135, 1450
PspEI	GGTNACC	1 cut(s)	975
PspFI	CCCAGC	2 cut(s)	1065, 1211
PspGI	CCWGG	3 cut(s)	879, 1135, 1450
PspN4I	GGNNCC	2 cut(s)	535, 1303
PspPI	GGNCC	5 cut(s)	534, 883, 1109, 1139, 1454
PstI	CTGCAG	1 cut(s)	612
PsuI	RGATCY	2 cut(s)	223, 1603
PvuII	CAGCTG	2 cut(s)	694, 1145
RsaI	GTAC	3 cut(s)	1303, 1323, 1353
RsaNI	GTAC	3 cut(s)	1302, 1322, 1352
SacI	GAGCTC	1 cut(s)	1575
SaqAI	TTAA	2 cut(s)	641, 836
SatI	GCNGC	3 cut(s)	311, 771, 1622
Sau96I	GGNCC	5 cut(s)	534, 883, 1109, 1139, 1454
SchI	GAGTC	3 cut(s)	67, 414, 918
ScrFI	CCNGG	3 cut(s)	881, 1137, 1452
SduI	GDGCHC	3 cut(s)	1135, 1521, 1575
SfaNI	GCATC	3 cut(s)	119, 1367, 1493
SfcI	CTRYAG	2 cut(s)	252, 608
SinI	GGWCC	4 cut(s)	534, 1109, 1139, 1454
SsiI	CCGC	6 cut(s)	206, 1009, 1116, 1400, 1578, 1621
SspMI	CTAG	4 cut(s)	713, 1070, 1362, 1497
SstI	GAGCTC	1 cut(s)	1575
StyD4I	CCNGG	3 cut(s)	879, 1135, 1450
TaaI	ACNGT	6 cut(s)	83, 766, 784, 808, 898, 1479
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	3 cut(s)	549, 1491, 1617
TatI	WGTACW	1 cut(s)	1321
TauI	GCSGC	1 cut(s)	1624
TfiI	GAWTC	5 cut(s)	106, 377, 434, 1415, 1488
Tru1I	TTAA	2 cut(s)	641, 836
Tru9I	TTAA	2 cut(s)	641, 836
TscAI	CASTG	5 cut(s)	43, 513, 771, 973, 1111
TseFI	GTSAC	2 cut(s)	493, 975
TseI	GCWGC	2 cut(s)	310, 770
Tsp45I	GTSAC	2 cut(s)	493, 975
TspDTI	ATGAA	2 cut(s)	918, 1541
TspGWI	ACGGA	3 cut(s)	336, 1356, 1538
TspRI	CASTG	5 cut(s)	43, 513, 771, 973, 1111
Van91I	CCANNNNNTGG	1 cut(s)	1218
VneI	GTGCAC	1 cut(s)	1131
VpaK11BI	GGWCC	4 cut(s)	534, 1109, 1139, 1454
XagI	CCTNNNNNAGG	1 cut(s)	548
XapI	RAATTY	4 cut(s)	478, 560, 670, 748
XcmI	CCANNNNNNNNNTGG	2 cut(s)	698, 1608
XspI	CTAG	4 cut(s)	713, 1070, 1362, 1497
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.