Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010943

Physical Location & Seq

Genomic Coordinates Reverse (-)

7108751 .. 7113517

Gene Structure 4767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGAAAGACTGAAGGAGAGCAGGGTTCGGCTTCCAGTGCGGGGTCTGACCACCCCCCCTCATCCCAAAATGCAGAGACTCACTACTGTCCTTGTTGGTATGGTAGGAGGATTCGGACACTAATTGGCCTCAGATGCATTTTGGTTCTCTTTCTCTCTCTTGCTTTGTTCCTCTCTGCAATCTTCTGGTTGCCTCCATTTCTTCAGTTTGCGGATCAGGGCGATCTGGATCTTGATCCAAAGTTCAGAGATCATTCTATAGTAGCAAGTTTCAATCTTTCGAAGCCGGTTTCTTTGCTGGAGGATAATGTCTTGCAGCTTGAAGATAACATTTTTGATGAGATAGTTGCTCCGTCAACTAAAGTGGTTATCCTATCTCTGGAATCCTTAGCTGGATCAAATGTAACAAGAGTCGTATTTGGGGTTGATCCTGACCCGGAATCATCAAAGTTATTGCCAACTTCTCAAAGTTTGATCAAAGAAAATTTTGAATATCTGGTCACAAACCAATCACTGAGCCTAAATACATCCTTGTTTGGGCCCACATCCTTTTTCGAGGTGCTAAAATTTCCAGATGGAATTACCATAATTCCACCACAGAAAGCGTTTCTTCTGCAGAAAGTGCAAATCCTTTTCAATTTCACCTTAAACTTCTCTATCTATCAAATACAACTAAATTTCAATGAACTGGAAAGCCAGCTGAAGTCTGGGTTACATCTAGCACCCTATGAGAACCTTTATGTTAGCTTGTCAAATTCAAAAGGTTCAACAGTGGCAGCCCCTACTACTGTTCAGTCATCTGTTCTATTGACAGTTGGCAATACTCCTTCAATGCAAAGATTAAAACAACTGGCTCAAACCATCACACATTCTCATTCAAGAAACCTGGGCCTGAATAATACGGTATTTGGTAGAGTCAAGCAAGTTCGTCTTTCATCTATTTTGCAACATTCCCTCAATGGTGGAGATGGCTCTGCTAGGTCACCTTCTCCTGCTCCATTGCCTCATCCCCACCCCCCATCACGCCCACCATCACCACCACCACCACCATCACCATCACCACAATTCCCAGCTAGCTCCTGCAATTTCACCTGCACCTGCAACTGGCAGTGGTCCACCCGCAACGTTCAAAGGTGCACCTGGACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

383

Amino Acids

42.09

Weight (kDa)

7.1

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	90 - 180	1.7e-27	Domain of unknown function (DUF7036)
DUF7036	PF23041	213 - 304	2.2e-23	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56590 AT3G56590
fragaria_vesca	FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240
prunus_persica	Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494681
rosa_laevigata	RLG00000022664
rosa_multiflora	Rmu_sc0000840.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390970
rosa_rugosa	Rorug03G0268000 Rorug03G0268000 Rorug03G0268000
rosa_samantha	Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400
rosa_wichuraiana	Rw3G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1100, 1106
Acc36I	ACCTGC	2 cut(s)	1100, 1106
AciI	CCGC	3 cut(s)	41, 212, 1120
AclI	AACGTT	1 cut(s)	1125
AclWI	GGATC	5 cut(s)	222, 230, 237, 403, 422
AcsI	RAATTY	4 cut(s)	484, 566, 676, 754
AcuI	CTGAAG	3 cut(s)	33, 188, 722
AfiI	CCNNNNNNNGG	4 cut(s)	42, 379, 537, 1104
AjnI	CCWGG	2 cut(s)	885, 1139
AluBI	AGCT	7 cut(s)	319, 392, 700, 747, 1073, 1077, 1149
AluI	AGCT	7 cut(s)	319, 392, 700, 747, 1073, 1077, 1149
Alw21I	GWGCWC	1 cut(s)	1139
Alw26I	GTCTC	1 cut(s)	71
Alw44I	GTGCAC	1 cut(s)	1135
AlwI	GGATC	5 cut(s)	222, 230, 237, 403, 422
AoxI	GGCC	3 cut(s)	127, 539, 889
ApaI	GGGCCC	1 cut(s)	543
ApaLI	GTGCAC	1 cut(s)	1135
ApeKI	GCWGC	2 cut(s)	316, 776
ApoI	RAATTY	4 cut(s)	484, 566, 676, 754
AspS9I	GGNCC	5 cut(s)	539, 540, 889, 1113, 1143
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	6 cut(s)	634, 975, 1026, 1044, 1050, 1081
AsuII	TTCGAA	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	1073
AvaII	GGWCC	2 cut(s)	1113, 1143
BaeGI	GKGCMC	2 cut(s)	543, 1139
BanII	GRGCYC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	1139
BbvI	GCAGC	2 cut(s)	328, 788
BccI	CCATC	7 cut(s)	569, 869, 962, 1027, 1039, 1057, 1063
BciT130I	CCWGG	2 cut(s)	887, 1141
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	3 cut(s)	719, 978, 1074
BfmI	CTRYAG	2 cut(s)	258, 614
BfuAI	ACCTGC	2 cut(s)	1100, 1106
BisI	GCNGC	2 cut(s)	317, 777
BlsI	GCNGC	2 cut(s)	318, 778
Bme1390I	CCNGG	3 cut(s)	437, 887, 1141
Bme18I	GGWCC	2 cut(s)	1113, 1143
BmgT120I	GGNCC	5 cut(s)	539, 540, 889, 1113, 1143
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	3 cut(s)	437, 887, 1141
BmsI	GCATC	1 cut(s)	125
BmtI	GCTAGC	1 cut(s)	1077
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	388
Bpu14I	TTCGAA	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	437
BsaBI	GATNNNNATC	2 cut(s)	228, 234
BsaJI	CCNNGG	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 379, 537, 1104
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	4 cut(s)	36, 693, 855, 1109
Bse3DI	GCAATG	1 cut(s)	998
Bse8I	GATNNNNATC	2 cut(s)	228, 234
BseBI	CCWGG	2 cut(s)	887, 1141
BseDI	CCNNGG	1 cut(s)	886
BseGI	GGATG	4 cut(s)	62, 527, 545, 1006
BseJI	GATNNNNATC	2 cut(s)	228, 234
BseLI	CCNNNNNNNGG	4 cut(s)	42, 379, 537, 1104
BseMI	GCAATG	1 cut(s)	998
BseMII	CTCAG	2 cut(s)	145, 506
BseNI	ACTGG	4 cut(s)	36, 693, 855, 1109
BseSI	GKGCMC	2 cut(s)	543, 1139
BseXI	GCAGC	2 cut(s)	328, 788
BseYI	CCCAGC	1 cut(s)	1069
BsgI	GTGCAG	1 cut(s)	1078
BshFI	GGCC	3 cut(s)	129, 541, 891
BsiHKAI	GWGCWC	1 cut(s)	1139
BsiSI	CCGG	2 cut(s)	287, 437
BslI	CCNNNNNNNGG	4 cut(s)	42, 379, 537, 1104
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	129, 541, 891
Bsp119I	TTCGAA	1 cut(s)	281
Bsp120I	GGGCCC	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	543, 1139
Bsp143I	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
BspACI	CCGC	3 cut(s)	41, 212, 1120
BspANI	GGCC	3 cut(s)	129, 541, 891
BspCNI	CTCAG	2 cut(s)	144, 507
BspLI	GGNNCC	1 cut(s)	541
BspMAI	CTGCAG	1 cut(s)	618
BspMI	ACCTGC	2 cut(s)	1100, 1106
BspOI	GCTAGC	1 cut(s)	1077
BspPI	GGATC	5 cut(s)	222, 230, 237, 403, 422
BspT104I	TTCGAA	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	998
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	4 cut(s)	36, 693, 855, 1109
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	886
BssMI	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
Bst2UI	CCWGG	2 cut(s)	887, 1141
Bst4CI	ACNGT	5 cut(s)	89, 772, 790, 814, 904
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	698, 1075
BstDEI	CTNAG	3 cut(s)	131, 388, 515
BstEII	GGTNACC	1 cut(s)	981
BstF5I	GGATG	4 cut(s)	62, 527, 545, 1006
BstKTI	GATC	8 cut(s)	217, 226, 232, 238, 253, 398, 430, 477
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 135, 622
BstNI	CCWGG	2 cut(s)	887, 1141
BstPI	GGTNACC	1 cut(s)	981
BstSCI	CCNGG	3 cut(s)	435, 885, 1139
BstSFI	CTRYAG	2 cut(s)	258, 614
BstSLI	GKGCMC	2 cut(s)	543, 1139
BstV1I	GCAGC	2 cut(s)	328, 788
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	129, 541, 891
BtsCI	GGATG	4 cut(s)	62, 527, 545, 1006
BtsI	GCAGTG	1 cut(s)	1115
BtsIMutI	CAGTG	4 cut(s)	43, 512, 777, 1115
BveI	ACCTGC	2 cut(s)	1100, 1106
Cac8I	GCNNGC	2 cut(s)	698, 1075
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	5 cut(s)	539, 540, 889, 1113, 1143
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
DdeI	CTNAG	3 cut(s)	131, 388, 515
DpnI	GATC	8 cut(s)	216, 225, 231, 237, 252, 397, 429, 476
DpnII	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	2 cut(s)	1113, 1143
Eco57I	CTGAAG	3 cut(s)	33, 188, 722
Eco91I	GGTNACC	1 cut(s)	981
EcoO65I	GGTNACC	1 cut(s)	981
EcoRII	CCWGG	2 cut(s)	885, 1139
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	543
FaiI	YATR	5 cut(s)	102, 260, 587, 729, 741
FalI	AAGNNNNNCTT	4 cut(s)	594, 626, 915, 947
FauI	CCCGC	2 cut(s)	34, 1127
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	317, 777
FokI	GGATG	4 cut(s)	49, 514, 532, 993
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	2 cut(s)	317, 777
FspBI	CTAG	3 cut(s)	719, 978, 1074
GluI	GCNGC	2 cut(s)	317, 777
GsaI	CCCAGC	1 cut(s)	1073
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	129, 541, 891
HapII	CCGG	2 cut(s)	287, 437
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	6 cut(s)	79, 112, 383, 411, 440, 915
HpaII	CCGG	2 cut(s)	287, 437
HphI	GGTGA	6 cut(s)	634, 975, 1026, 1044, 1050, 1081
Hpy166II	GTNNAC	3 cut(s)	357, 1116, 1137
Hpy188I	TCNGA	4 cut(s)	49, 117, 134, 248
Hpy188III	TCNNGA	6 cut(s)	227, 233, 380, 431, 572, 879
Hpy8I	GTNNAC	3 cut(s)	357, 1116, 1137
HpyAV	CCTTC	3 cut(s)	8, 837, 996
HpyCH4III	ACNGT	5 cut(s)	89, 772, 790, 814, 904
HpyCH4IV	ACGT	1 cut(s)	1125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 135, 622
HpyF3I	CTNAG	3 cut(s)	131, 388, 515
HpySE526I	ACGT	1 cut(s)	1125
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
LmnI	GCTCC	3 cut(s)	355, 1000, 1082
Lsp1109I	GCAGC	2 cut(s)	328, 788
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	3 cut(s)	719, 978, 1074
MaeII	ACGT	1 cut(s)	1125
MaeIII	GTNAC	4 cut(s)	403, 499, 711, 981
MalI	GATC	8 cut(s)	216, 225, 231, 237, 252, 397, 429, 476
MboI	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
MboII	GAAGA	4 cut(s)	175, 194, 335, 602
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	543, 1139
MlyI	GAGTC	3 cut(s)	73, 420, 924
MnlI	CCTC	9 cut(s)	70, 102, 140, 182, 204, 295, 550, 965, 1014
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	2 cut(s)	647, 842
MspA1I	CMGCKG	2 cut(s)	700, 1149
MspI	CCGG	2 cut(s)	287, 437
MspR9I	CCNGG	3 cut(s)	437, 887, 1141
MvaI	CCWGG	2 cut(s)	887, 1141
MwoI	GCNNNNNNNGC	3 cut(s)	38, 135, 622
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
NheI	GCTAGC	1 cut(s)	1073
NlaIV	GGNNCC	1 cut(s)	541
NmuCI	GTSAC	2 cut(s)	499, 981
NsiI	ATGCAT	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	281
PaqCI	CACCTGC	2 cut(s)	1100, 1106
PfeI	GAWTC	3 cut(s)	112, 383, 440
PkrI	GCNGC	2 cut(s)	318, 778
PleI	GAGTC	3 cut(s)	73, 419, 923
PpsI	GAGTC	3 cut(s)	73, 419, 923
Psp1406I	AACGTT	1 cut(s)	1125
Psp6I	CCWGG	2 cut(s)	885, 1139
PspEI	GGTNACC	1 cut(s)	981
PspFI	CCCAGC	1 cut(s)	1069
PspGI	CCWGG	2 cut(s)	885, 1139
PspN4I	GGNNCC	1 cut(s)	541
PspOMI	GGGCCC	1 cut(s)	539
PspPI	GGNCC	5 cut(s)	539, 540, 889, 1113, 1143
PstI	CTGCAG	1 cut(s)	618
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	2 cut(s)	700, 1149
SaqAI	TTAA	2 cut(s)	647, 842
SatI	GCNGC	2 cut(s)	317, 777
Sau3AI	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
Sau96I	GGNCC	5 cut(s)	539, 540, 889, 1113, 1143
SchI	GAGTC	3 cut(s)	73, 420, 924
ScrFI	CCNGG	3 cut(s)	437, 887, 1141
SduI	GDGCHC	2 cut(s)	543, 1139
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	2 cut(s)	258, 614
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	2 cut(s)	1113, 1143
SsiI	CCGC	3 cut(s)	41, 212, 1120
SspMI	CTAG	3 cut(s)	719, 978, 1074
StyD4I	CCNGG	3 cut(s)	435, 885, 1139
TaaI	ACNGT	5 cut(s)	89, 772, 790, 814, 904
TaiI	ACGT	1 cut(s)	1128
TaqI	TCGA	2 cut(s)	281, 555
TfiI	GAWTC	3 cut(s)	112, 383, 440
Tru1I	TTAA	2 cut(s)	647, 842
Tru9I	TTAA	2 cut(s)	647, 842
TscAI	CASTG	4 cut(s)	43, 519, 777, 1115
TseFI	GTSAC	2 cut(s)	499, 981
TseI	GCWGC	2 cut(s)	316, 776
Tsp45I	GTSAC	2 cut(s)	499, 981
TspDTI	ATGAA	2 cut(s)	699, 924
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	4 cut(s)	43, 519, 777, 1115
VneI	GTGCAC	1 cut(s)	1135
VpaK11BI	GGWCC	2 cut(s)	1113, 1143
XapI	RAATTY	4 cut(s)	484, 566, 676, 754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704
XspI	CTAG	3 cut(s)	719, 978, 1074
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.