Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010943

Physical Location & Seq

Genomic Coordinates Forward (+)

41157554 .. 41162680

Gene Structure 5127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG351800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTACTATTTGAACCAGGTGGTTATCCTATCTCTGGAATCCTTAGCTGGATCAAATGTAACAAGAGTCGTATTTGGGGTTGATCCTGACCCAGAATCATCAAAGTTATTGCCAACTTCTCAAAGTTTGATCAAAGAAAATTTTGAATATCTGGTCACATACAAATCACTGAGCCTAAATACATCCTTGTTTGGGTCCACATCCTTTTTCGAGGTGCTAAAATTTCCAGATGGAATTACCATAATTCCACCACAGAAAGCGTTTCTTCTGCAGAAAGTGCAAATCCTTTTCAATTTCACCTTAAACTTCCCCATCTATCAAATACAACAAAATTTCAAAGAACTGGAAAGCCAGCTGAAGTCTGGGTTACATCTAGCACCCTATGAGAACCTTTATGTTAGCTTGTCAAATTCAAAAGGTTCAACAGTGGCAGCCCCAACTACTGTTCAGTCATCTGTTCTATTGAGGGTTGGCAATACTCCTTCAATGCAAAGATTAAAACAACTGGCTCAAACCATCACACATTCTCATTCAAGAAACCTGGGCCTGAATAATACGGTATTTGGTAGAGTCAAGCAAGTTCGTCTTTCATCTATTTTGCAACATTCCCTCAATGGTGGAGATGGCACTGCGTGGTCACCTTCTCCTGCTCCATTGCCTCATCCCCACCCCCCCCATCACGCCCACCATCACCATCACCACCACCATCGCCATCACCACAATTCCCAGCTAGCTCCTGCAATTTCACCTGCACCTACAACTGGCAGTGGTCCACCCGCAACGTTCAAAGGTGCATCTGGACCAGCTGCTCATTCACCTGAGCCACACAAAAGTATGCCTGCACCTGAGAAAAGTTGTGAAGCAAAGCCTCCCAGCTTTTGGTCTGGTCGTAGAGGGAAGGCTGGAAAGCAGTCTCGTTTATCCCCTGCCGGCACACCAGATGTTTCTCCTCCCGTCTTTGGTACCTCACCCCAAAAGCAAGTACACCCATCAGCACCCGTTTCTCGTTCAGTACCAGCATCTAGTCCGTTGCCTCATGTAGTTTTTGCTCATGTTCTTCCGCCATCAAAGAGTGAATCAGATAGTAGCCATTCTTACACAGGGCAATCACCTGGACCATCGCCGTCAACATTAATTGCAGCAGCTTCTGCAGCTCTTCTACCATGTGTTCAATGGGCATTATCACTATTCCTAGCTTTGGTGTTGCTTTATGACAACAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

43.94

Weight (kDa)

9.7

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	6 - 65	2.5e-13	Domain of unknown function (DUF7036)
DUF7036	PF23041	98 - 189	1.1e-24	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56590 AT3G56590
fragaria_vesca	FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240
prunus_persica	Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494681
rosa_laevigata	RLG00000022664
rosa_multiflora	Rmu_sc0000840.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390970
rosa_rugosa	Rorug03G0268000 Rorug03G0268000 Rorug03G0268000
rosa_samantha	Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400
rosa_wichuraiana	Rw3G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	757
Acc36I	ACCTGC	1 cut(s)	757
Acc65I	GGTACC	1 cut(s)	962
AccB1I	GGYRCC	1 cut(s)	962
AccB7I	CCANNNNNTGG	1 cut(s)	879
AciI	CCGC	2 cut(s)	777, 1061
AclI	AACGTT	1 cut(s)	782
AclWI	GGATC	2 cut(s)	58, 77
AcsI	RAATTY	4 cut(s)	139, 221, 331, 409
AcuI	CTGAAG	1 cut(s)	377
AdeI	CACNNNGTG	1 cut(s)	633
AfaI	GTAC	4 cut(s)	5, 964, 984, 1014
AfiI	CCNNNNNNNGG	6 cut(s)	34, 192, 761, 879, 959, 1198
AjnI	CCWGG	3 cut(s)	15, 540, 1111
Alw26I	GTCTC	1 cut(s)	918
AlwI	GGATC	2 cut(s)	58, 77
AlwNI	CAGNNNCTG	1 cut(s)	1148
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	5 cut(s)	431, 806, 1139, 1142, 1151
ApoI	RAATTY	4 cut(s)	139, 221, 331, 409
AseI	ATTAAT	1 cut(s)	1133
Asp718I	GGTACC	1 cut(s)	962
AspS9I	GGNCC	5 cut(s)	195, 544, 770, 800, 1115
AsuHPI	GGTGA	9 cut(s)	289, 630, 683, 689, 707, 738, 807, 960, 1101
AsuNHI	GCTAGC	1 cut(s)	730
AvaII	GGWCC	4 cut(s)	195, 770, 800, 1115
BanI	GGYRCC	1 cut(s)	962
BbvI	GCAGC	5 cut(s)	443, 793, 1151, 1154, 1163
BceAI	ACGGC	1 cut(s)	1108
BciT130I	CCWGG	3 cut(s)	17, 542, 1113
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	918
BfaI	CTAG	4 cut(s)	374, 731, 1023, 1193
BfmI	CTRYAG	2 cut(s)	269, 1149
BfuAI	ACCTGC	1 cut(s)	757
BisI	GCNGC	5 cut(s)	432, 807, 1140, 1143, 1152
BlsI	GCNGC	5 cut(s)	433, 808, 1141, 1144, 1153
Bme1390I	CCNGG	3 cut(s)	17, 542, 1113
Bme18I	GGWCC	4 cut(s)	195, 770, 800, 1115
BmgT120I	GGNCC	5 cut(s)	195, 544, 770, 800, 1115
BmiI	GGNNCC	2 cut(s)	196, 964
BmrFI	CCNGG	3 cut(s)	17, 542, 1113
BmsI	GCATC	2 cut(s)	803, 1028
BmtI	GCTAGC	1 cut(s)	734
Bpu10I	CCTNAGC	2 cut(s)	43, 819
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 192, 761, 879, 959, 1198
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	3 cut(s)	348, 510, 766
Bse3DI	GCAATG	1 cut(s)	653
BseBI	CCWGG	3 cut(s)	17, 542, 1113
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	3 cut(s)	182, 200, 661
BseLI	CCNNNNNNNGG	6 cut(s)	34, 192, 761, 879, 959, 1198
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	3 cut(s)	161, 810, 837
BseNI	ACTGG	3 cut(s)	348, 510, 766
BseRI	GAGGAG	1 cut(s)	939
BseXI	GCAGC	5 cut(s)	443, 793, 1151, 1154, 1163
BseYI	CCCAGC	2 cut(s)	726, 872
BsgI	GTGCAG	2 cut(s)	735, 825
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	962
BsiSI	CCGG	1 cut(s)	930
BslI	CCNNNNNNNGG	6 cut(s)	34, 192, 761, 879, 959, 1198
BsmAI	GTCTC	1 cut(s)	918
BsnI	GGCC	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	50, 82, 129
BspACI	CCGC	2 cut(s)	777, 1061
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	3 cut(s)	162, 811, 838
BspLI	GGNNCC	2 cut(s)	196, 964
BspMAI	CTGCAG	2 cut(s)	273, 1153
BspMI	ACCTGC	1 cut(s)	757
BspOI	GCTAGC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	58, 77
BspQI	GCTCTTC	1 cut(s)	1161
BspT107I	GGYRCC	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	929
BsrI	ACTGG	3 cut(s)	348, 510, 766
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	3 cut(s)	50, 82, 129
Bst2UI	CCWGG	3 cut(s)	17, 542, 1113
Bst4CI	ACNGT	3 cut(s)	427, 445, 559
Bst6I	CTCTTC	1 cut(s)	1161
BstAPI	GCANNNNNTGC	2 cut(s)	277, 1148
BstC8I	GCNNGC	4 cut(s)	353, 732, 840, 931
BstDEI	CTNAG	4 cut(s)	43, 170, 819, 846
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	3 cut(s)	182, 200, 661
BstKTI	GATC	3 cut(s)	53, 85, 132
BstMAI	GTCTC	1 cut(s)	918
BstMBI	GATC	3 cut(s)	50, 82, 129
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 1148, 1151
BstNI	CCWGG	3 cut(s)	17, 542, 1113
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	3 cut(s)	15, 540, 1111
BstSFI	CTRYAG	2 cut(s)	269, 1149
BstV1I	GCAGC	5 cut(s)	443, 793, 1151, 1154, 1163
BsuRI	GGCC	1 cut(s)	546
BtgZI	GCGATG	2 cut(s)	692, 1104
BtsCI	GGATG	3 cut(s)	182, 200, 661
BtsI	GCAGTG	2 cut(s)	627, 772
BtsIMutI	CAGTG	4 cut(s)	167, 432, 627, 772
BveI	ACCTGC	1 cut(s)	757
Cac8I	GCNNGC	4 cut(s)	353, 732, 840, 931
CaiI	CAGNNNCTG	1 cut(s)	1148
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	5 cut(s)	195, 544, 770, 800, 1115
CsiI	ACCWGGT	1 cut(s)	15
Csp6I	GTAC	4 cut(s)	4, 963, 983, 1013
CviAII	CATG	3 cut(s)	1037, 1052, 1164
CviQI	GTAC	4 cut(s)	4, 963, 983, 1013
DdeI	CTNAG	4 cut(s)	43, 170, 819, 846
DpnI	GATC	3 cut(s)	52, 84, 131
DpnII	GATC	3 cut(s)	50, 82, 129
DraIII	CACNNNGTG	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	1161
EarI	CTCTTC	1 cut(s)	1161
EciI	GGCGGA	1 cut(s)	1050
Eco47I	GGWCC	4 cut(s)	195, 770, 800, 1115
Eco57I	CTGAAG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	636
EcoO65I	GGTNACC	1 cut(s)	636
EcoRII	CCWGG	3 cut(s)	15, 540, 1111
FaeI	CATG	3 cut(s)	1040, 1055, 1167
FaiI	YATR	9 cut(s)	160, 242, 384, 396, 836, 1038, 1053, 1165, 1212
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 570, 602
FatI	CATG	3 cut(s)	1036, 1051, 1163
FauI	CCCGC	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	432, 807, 1140, 1143, 1152
FokI	GGATG	3 cut(s)	169, 187, 648
Fsp4HI	GCNGC	5 cut(s)	432, 807, 1140, 1143, 1152
FspBI	CTAG	4 cut(s)	374, 731, 1023, 1193
GluI	GCNGC	5 cut(s)	432, 807, 1140, 1143, 1152
GsaI	CCCAGC	2 cut(s)	730, 876
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	1 cut(s)	930
Hin1II	CATG	3 cut(s)	1040, 1055, 1167
HincII	GTYRAC	1 cut(s)	1128
HindII	GTYRAC	1 cut(s)	1128
HinfI	GANTC	5 cut(s)	38, 66, 95, 570, 1076
HpaII	CCGG	1 cut(s)	930
HphI	GGTGA	9 cut(s)	289, 630, 683, 689, 707, 738, 807, 960, 1101
Hpy166II	GTNNAC	4 cut(s)	198, 773, 985, 1128
Hpy188I	TCNGA	1 cut(s)	1081
Hpy188III	TCNNGA	5 cut(s)	35, 86, 227, 534, 798
Hpy8I	GTNNAC	4 cut(s)	198, 773, 985, 1128
HpyAV	CCTTC	3 cut(s)	492, 651, 892
HpyCH4III	ACNGT	3 cut(s)	427, 445, 559
HpyCH4IV	ACGT	1 cut(s)	782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 1148, 1151
HpyF3I	CTNAG	4 cut(s)	43, 170, 819, 846
HpySE526I	ACGT	1 cut(s)	782
Hsp92II	CATG	3 cut(s)	1040, 1055, 1167
KpnI	GGTACC	1 cut(s)	966
KroI	GCCGGC	1 cut(s)	929
KroNI	GCCGGC	1 cut(s)	931
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	50, 82, 129
LguI	GCTCTTC	1 cut(s)	1161
LmnI	GCTCC	2 cut(s)	655, 739
Lsp1109I	GCAGC	5 cut(s)	443, 793, 1151, 1154, 1163
LweI	GCATC	2 cut(s)	803, 1028
MabI	ACCWGGT	1 cut(s)	15
MaeI	CTAG	4 cut(s)	374, 731, 1023, 1193
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	4 cut(s)	58, 154, 366, 636
MalI	GATC	3 cut(s)	52, 84, 131
MboI	GATC	3 cut(s)	50, 82, 129
MboII	GAAGA	3 cut(s)	257, 1049, 1148
MlyI	GAGTC	2 cut(s)	75, 579
MroNI	GCCGGC	1 cut(s)	929
MseI	TTAA	3 cut(s)	302, 497, 1133
MspA1I	CMGCKG	2 cut(s)	355, 806
MspI	CCGG	1 cut(s)	930
MspR9I	CCNGG	3 cut(s)	17, 542, 1113
MvaI	CCWGG	3 cut(s)	17, 542, 1113
MwoI	GCNNNNNNNGC	3 cut(s)	277, 1148, 1151
NaeI	GCCGGC	1 cut(s)	931
NdeII	GATC	3 cut(s)	50, 82, 129
NgoMIV	GCCGGC	1 cut(s)	929
NheI	GCTAGC	1 cut(s)	730
NlaIII	CATG	3 cut(s)	1040, 1055, 1167
NlaIV	GGNNCC	2 cut(s)	196, 964
NmuCI	GTSAC	2 cut(s)	154, 636
PaqCI	CACCTGC	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	1161
PdiI	GCCGGC	1 cut(s)	931
PfeI	GAWTC	3 cut(s)	38, 95, 1076
PflMI	CCANNNNNTGG	1 cut(s)	879
PkrI	GCNGC	5 cut(s)	433, 808, 1141, 1144, 1153
PleI	GAGTC	2 cut(s)	74, 578
PpsI	GAGTC	2 cut(s)	74, 578
PshBI	ATTAAT	1 cut(s)	1133
Psp1406I	AACGTT	1 cut(s)	782
Psp6I	CCWGG	3 cut(s)	15, 540, 1111
PspEI	GGTNACC	1 cut(s)	636
PspFI	CCCAGC	2 cut(s)	726, 872
PspGI	CCWGG	3 cut(s)	15, 540, 1111
PspN4I	GGNNCC	2 cut(s)	196, 964
PspPI	GGNCC	5 cut(s)	195, 544, 770, 800, 1115
PstI	CTGCAG	2 cut(s)	273, 1153
PstNI	CAGNNNCTG	1 cut(s)	1148
PvuII	CAGCTG	2 cut(s)	355, 806
RsaI	GTAC	4 cut(s)	5, 964, 984, 1014
RsaNI	GTAC	4 cut(s)	4, 963, 983, 1013
SapI	GCTCTTC	1 cut(s)	1161
SaqAI	TTAA	3 cut(s)	302, 497, 1133
SatI	GCNGC	5 cut(s)	432, 807, 1140, 1143, 1152
Sau3AI	GATC	3 cut(s)	50, 82, 129
Sau96I	GGNCC	5 cut(s)	195, 544, 770, 800, 1115
SchI	GAGTC	2 cut(s)	75, 579
ScrFI	CCNGG	3 cut(s)	17, 542, 1113
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	803, 1028
SfcI	CTRYAG	2 cut(s)	269, 1149
SinI	GGWCC	4 cut(s)	195, 770, 800, 1115
SsiI	CCGC	2 cut(s)	777, 1061
SspMI	CTAG	4 cut(s)	374, 731, 1023, 1193
StyD4I	CCNGG	3 cut(s)	15, 540, 1111
TaaI	ACNGT	3 cut(s)	427, 445, 559
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	1 cut(s)	210
TatI	WGTACW	2 cut(s)	3, 982
TfiI	GAWTC	3 cut(s)	38, 95, 1076
Tru1I	TTAA	3 cut(s)	302, 497, 1133
Tru9I	TTAA	3 cut(s)	302, 497, 1133
TscAI	CASTG	4 cut(s)	174, 432, 634, 772
TseFI	GTSAC	2 cut(s)	154, 636
TseI	GCWGC	5 cut(s)	431, 806, 1139, 1142, 1151
Tsp45I	GTSAC	2 cut(s)	154, 636
TspDTI	ATGAA	1 cut(s)	579
TspGWI	ACGGA	1 cut(s)	1017
TspRI	CASTG	4 cut(s)	174, 432, 634, 772
Van91I	CCANNNNNTGG	1 cut(s)	879
VpaK11BI	GGWCC	4 cut(s)	195, 770, 800, 1115
VspI	ATTAAT	1 cut(s)	1133
XapI	RAATTY	4 cut(s)	139, 221, 331, 409
XcmI	CCANNNNNNNNNTGG	2 cut(s)	359, 1170
XspI	CTAG	4 cut(s)	374, 731, 1023, 1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.