Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010943

Physical Location & Seq

Genomic Coordinates Forward (+)

41632723 .. 41636775

Gene Structure 4053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGGGAAAGACTGAAGGAGAGCAGGGTTCGGTTTCCAGTGCGGGCTCTGACCCCTCATCCCAAAATGCAGAGACTCACTACTGTCCTTGTTGGTATGATAGGAGGATTCGGACCCTAATTGGCCTCAGATGCATTTTGGTTCTCTTTCTCTCTCTTGCTTTGTTCCTCTCTGCAATGTTCTGGTTGCCTCCATTTCTTCAGTTTGCGGATCACGGCGATCTGGATCTTGATCCAAAGTTCAGAGATCATTCTATAGTAGCAAGTTTCAATCTTCGGAAGCCGGTTTCTTTGCTGGAGGATAATGTCTTGCAGCTTGAAGATAACATTTTTGATGAGATAGTTGCTCCGTCAACTAAAGTGGTTATCCTATCTCTGGAATCCTTAGCTGGATCAAATGTAACAAGAGTCGTATTTGGGGTTGATCCTGACCCAGAATCATCAAAGTTATTGCCAACTTCTCAAAGTTTGATCAAAGAAAATTTTGAATATCTGGTCACAAACCAATCACTGAGCCTAAATACATCCTTGTTTGGGTCCACATTCCTTTTCGAGGTGCTAAAATTTCCAGATGGAATTACCATAATTCCACCACAGAAAGCGTTTCTTCTGCAGAAAGTGCAAATCCTTTTCAATTTCACCTTAAACTTCTCTATCTATCAAATACAACTAAATTTCAAAGAACTGGAAAGCCAGCTGAAGTCTGGGTTACATCTAGCACCCTATGAGAACCTTTATGTTAGCTTGTCAAATTCAAAAGGTTCAACAGTGGCAGCCCCTACTACTGTTCAGTCATATGTTCTATTGACAGTTGGCAATACTCCTTCAATGCAAAGATTAAAACAACTGGCTCAAACCATCACACATTCTCATTCAAGAAACCTGGGCCTGAATAATACGGTATTTGGTAGAGTCAAGCAAGTTCGTCTTTCATCTATTTTGCAACATTCCCTCAATGGTGGAGATGGCACTGCGTGGTCACCTTCTCCTGCTCCATTGCCTCATCCCCACCGCCCCCATCACGCCCACCATCACCATCACCACCACCATCGCCATCACCACAATTCCCAGCTAGCTCCTGCAATTTCACCTGCACCTGCAACTGGCAGTGGTCCACCCGCAACGTTCAAAGGTGCACCTGGACCAGCTGATCATTCACCTGAGCCACACAAAAGTATGCCTGCACCTGAGAAAAGTTGTGAAGCAAAGCCTCCCAGCTTTTGGTCTGGTCGTAGAGGGAAGGCTGGAAAGCAGTCTCGTTTATCCCCTGCCGGCACACCAGATGTTTCTCCTCCCGTCTTTGGTACCTCACCCCAAAAGCAAGTACACCCATCAGCACCCGTTTCTCGTTCAGTACCAGCATCTAGTCCGTTGCCTCATGTAGTTTTTGCTCATGTTCTTCCGCCATCAAAGAGTGAATCAGATAGTAGCCATTCTTACACAGGGCAATCACCTGGACCATCGCCGTCAACATTAATTGCAGCAGCTTCTGCAGGTCTTCTACCTTGTGTTCAATGGGCATTACCACTATTCCTAGCTTTGGTGTTACTTTATGACAACAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

521

Amino Acids

56.55

Weight (kDa)

8.69

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	88 - 178	1.9e-27	Domain of unknown function (DUF7036)
DUF7036	PF23041	211 - 302	4.6e-23	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56590 AT3G56590
fragaria_vesca	FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240
prunus_persica	Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494681
rosa_laevigata	RLG00000022664
rosa_multiflora	Rmu_sc0000840.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390970
rosa_rugosa	Rorug03G0268000 Rorug03G0268000 Rorug03G0268000
rosa_samantha	Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400
rosa_wichuraiana	Rw3G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1096, 1102
Acc36I	ACCTGC	3 cut(s)	1096, 1102, 1481
Acc65I	GGTACC	1 cut(s)	1301
AccB1I	GGYRCC	1 cut(s)	1301
AccB7I	CCANNNNNTGG	1 cut(s)	1218
AciI	CCGC	5 cut(s)	41, 206, 1009, 1116, 1400
AclI	AACGTT	1 cut(s)	1121
AclWI	GGATC	5 cut(s)	216, 224, 231, 397, 416
AcsI	RAATTY	4 cut(s)	478, 560, 670, 748
AcuI	CTGAAG	3 cut(s)	33, 182, 716
AdeI	CACNNNGTG	1 cut(s)	972
AfaI	GTAC	3 cut(s)	1303, 1323, 1353
AfiI	CCNNNNNNNGG	7 cut(s)	373, 531, 550, 1100, 1218, 1298, 1537
AjnI	CCWGG	3 cut(s)	879, 1135, 1450
Alw21I	GWGCWC	1 cut(s)	1135
Alw26I	GTCTC	2 cut(s)	65, 1257
Alw44I	GTGCAC	1 cut(s)	1131
AlwI	GGATC	5 cut(s)	216, 224, 231, 397, 416
AlwNI	CAGNNNCTG	1 cut(s)	1487
AoxI	GGCC	2 cut(s)	121, 883
ApaLI	GTGCAC	1 cut(s)	1131
ApeKI	GCWGC	4 cut(s)	310, 770, 1478, 1481
ApoI	RAATTY	4 cut(s)	478, 560, 670, 748
AseI	ATTAAT	1 cut(s)	1472
Asp718I	GGTACC	1 cut(s)	1301
AspS9I	GGNCC	6 cut(s)	111, 534, 883, 1109, 1139, 1454
AsuHPI	GGTGA	9 cut(s)	628, 969, 1022, 1028, 1046, 1077, 1146, 1299, 1440
AsuNHI	GCTAGC	1 cut(s)	1069
AvaII	GGWCC	5 cut(s)	111, 534, 1109, 1139, 1454
BaeGI	GKGCMC	1 cut(s)	1135
BanI	GGYRCC	1 cut(s)	1301
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	1487
Bbv12I	GWGCWC	1 cut(s)	1135
BbvI	GCAGC	4 cut(s)	322, 782, 1490, 1493
BceAI	ACGGC	2 cut(s)	229, 1447
BciT130I	CCWGG	3 cut(s)	881, 1137, 1452
BclI	TGATCA	2 cut(s)	468, 1147
BcoDI	GTCTC	2 cut(s)	65, 1257
BfaI	CTAG	4 cut(s)	713, 1070, 1362, 1532
BfmI	CTRYAG	3 cut(s)	252, 608, 1488
BfuAI	ACCTGC	3 cut(s)	1096, 1102, 1481
BisI	GCNGC	4 cut(s)	311, 771, 1479, 1482
BlsI	GCNGC	4 cut(s)	312, 772, 1480, 1483
Bme1390I	CCNGG	3 cut(s)	881, 1137, 1452
Bme18I	GGWCC	5 cut(s)	111, 534, 1109, 1139, 1454
BmgT120I	GGNCC	6 cut(s)	111, 534, 883, 1109, 1139, 1454
BmiI	GGNNCC	3 cut(s)	113, 535, 1303
BmrFI	CCNGG	3 cut(s)	881, 1137, 1452
BmsI	GCATC	2 cut(s)	119, 1367
BmtI	GCTAGC	1 cut(s)	1073
BpiI	GAAGAC	1 cut(s)	1487
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	2 cut(s)	382, 1158
BsaBI	GATNNNNATC	2 cut(s)	222, 228
BsaJI	CCNNGG	1 cut(s)	880
Bsc4I	CCNNNNNNNGG	7 cut(s)	373, 531, 550, 1100, 1218, 1298, 1537
Bse118I	RCCGGY	2 cut(s)	280, 1268
Bse1I	ACTGG	4 cut(s)	36, 687, 849, 1105
Bse3DI	GCAATG	2 cut(s)	180, 992
Bse8I	GATNNNNATC	2 cut(s)	222, 228
BseBI	CCWGG	3 cut(s)	881, 1137, 1452
BseDI	CCNNGG	1 cut(s)	880
BseGI	GGATG	3 cut(s)	56, 521, 1000
BseJI	GATNNNNATC	2 cut(s)	222, 228
BseLI	CCNNNNNNNGG	7 cut(s)	373, 531, 550, 1100, 1218, 1298, 1537
BseMI	GCAATG	2 cut(s)	180, 992
BseMII	CTCAG	4 cut(s)	139, 500, 1149, 1176
BseNI	ACTGG	4 cut(s)	36, 687, 849, 1105
BseRI	GAGGAG	1 cut(s)	1278
BseSI	GKGCMC	1 cut(s)	1135
BseXI	GCAGC	4 cut(s)	322, 782, 1490, 1493
BseYI	CCCAGC	2 cut(s)	1065, 1211
BsgI	GTGCAG	2 cut(s)	1074, 1164
BshFI	GGCC	2 cut(s)	123, 885
BshNI	GGYRCC	1 cut(s)	1301
BsiHKAI	GWGCWC	1 cut(s)	1135
BsiSI	CCGG	2 cut(s)	281, 1269
BslI	CCNNNNNNNGG	7 cut(s)	373, 531, 550, 1100, 1218, 1298, 1537
BsmAI	GTCTC	2 cut(s)	65, 1257
BsnI	GGCC	2 cut(s)	123, 885
Bsp1286I	GDGCHC	2 cut(s)	47, 1135
Bsp143I	GATC	9 cut(s)	208, 217, 223, 229, 244, 389, 421, 468, 1147
BspACI	CCGC	5 cut(s)	41, 206, 1009, 1116, 1400
BspANI	GGCC	2 cut(s)	123, 885
BspCNI	CTCAG	4 cut(s)	138, 501, 1150, 1177
BspLI	GGNNCC	3 cut(s)	113, 535, 1303
BspMAI	CTGCAG	2 cut(s)	612, 1492
BspMI	ACCTGC	3 cut(s)	1096, 1102, 1481
BspOI	GCTAGC	1 cut(s)	1073
BspPI	GGATC	5 cut(s)	216, 224, 231, 397, 416
BspT107I	GGYRCC	1 cut(s)	1301
BsrDI	GCAATG	2 cut(s)	180, 992
BsrFI	RCCGGY	2 cut(s)	280, 1268
BsrI	ACTGG	4 cut(s)	36, 687, 849, 1105
BssAI	RCCGGY	2 cut(s)	280, 1268
BssECI	CCNNGG	1 cut(s)	880
BssMI	GATC	9 cut(s)	208, 217, 223, 229, 244, 389, 421, 468, 1147
Bst2UI	CCWGG	3 cut(s)	881, 1137, 1452
Bst4CI	ACNGT	5 cut(s)	83, 766, 784, 808, 898
BstAPI	GCANNNNNTGC	2 cut(s)	616, 1487
BstC8I	GCNNGC	5 cut(s)	43, 692, 1071, 1179, 1270
BstDEI	CTNAG	5 cut(s)	125, 382, 509, 1158, 1185
BstEII	GGTNACC	1 cut(s)	975
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	3 cut(s)	56, 521, 1000
BstKTI	GATC	9 cut(s)	211, 220, 226, 232, 247, 392, 424, 471, 1150
BstMAI	GTCTC	2 cut(s)	65, 1257
BstMBI	GATC	9 cut(s)	208, 217, 223, 229, 244, 389, 421, 468, 1147
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 616, 1487
BstNI	CCWGG	3 cut(s)	881, 1137, 1452
BstPI	GGTNACC	1 cut(s)	975
BstSCI	CCNGG	3 cut(s)	879, 1135, 1450
BstSFI	CTRYAG	3 cut(s)	252, 608, 1488
BstSLI	GKGCMC	1 cut(s)	1135
BstV1I	GCAGC	4 cut(s)	322, 782, 1490, 1493
BstV2I	GAAGAC	1 cut(s)	1487
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	123, 885
BtgZI	GCGATG	2 cut(s)	1031, 1443
BtsCI	GGATG	3 cut(s)	56, 521, 1000
BtsI	GCAGTG	2 cut(s)	966, 1111
BtsIMutI	CAGTG	5 cut(s)	43, 506, 771, 966, 1111
BveI	ACCTGC	3 cut(s)	1096, 1102, 1481
Cac8I	GCNNGC	5 cut(s)	43, 692, 1071, 1179, 1270
CaiI	CAGNNNCTG	1 cut(s)	1487
Cfr10I	RCCGGY	2 cut(s)	280, 1268
Cfr13I	GGNCC	6 cut(s)	111, 534, 883, 1109, 1139, 1454
Csp6I	GTAC	3 cut(s)	1302, 1322, 1352
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	2 cut(s)	1376, 1391
CviQI	GTAC	3 cut(s)	1302, 1322, 1352
DdeI	CTNAG	5 cut(s)	125, 382, 509, 1158, 1185
DpnI	GATC	9 cut(s)	210, 219, 225, 231, 246, 391, 423, 470, 1149
DpnII	GATC	9 cut(s)	208, 217, 223, 229, 244, 389, 421, 468, 1147
DraIII	CACNNNGTG	1 cut(s)	972
EciI	GGCGGA	1 cut(s)	1389
Eco24I	GRGCYC	1 cut(s)	47
Eco47I	GGWCC	5 cut(s)	111, 534, 1109, 1139, 1454
Eco57I	CTGAAG	3 cut(s)	33, 182, 716
Eco91I	GGTNACC	1 cut(s)	975
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	975
EcoRII	CCWGG	3 cut(s)	879, 1135, 1450
EcoT22I	ATGCAT	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	2 cut(s)	1379, 1394
FalI	AAGNNNNNCTT	4 cut(s)	588, 620, 909, 941
FatI	CATG	2 cut(s)	1375, 1390
FauI	CCCGC	2 cut(s)	34, 1123
FauNDI	CATATG	1 cut(s)	793
FbaI	TGATCA	2 cut(s)	468, 1147
Fnu4HI	GCNGC	4 cut(s)	311, 771, 1479, 1482
FokI	GGATG	3 cut(s)	43, 508, 987
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	311, 771, 1479, 1482
FspBI	CTAG	4 cut(s)	713, 1070, 1362, 1532
GluI	GCNGC	4 cut(s)	311, 771, 1479, 1482
GsaI	CCCAGC	2 cut(s)	1069, 1215
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	123, 885
HapII	CCGG	2 cut(s)	281, 1269
Hin1II	CATG	2 cut(s)	1379, 1394
HincII	GTYRAC	2 cut(s)	351, 1467
HindII	GTYRAC	2 cut(s)	351, 1467
HinfI	GANTC	7 cut(s)	73, 106, 377, 405, 434, 909, 1415
HpaII	CCGG	2 cut(s)	281, 1269
HphI	GGTGA	9 cut(s)	628, 969, 1022, 1028, 1046, 1077, 1146, 1299, 1440
Hpy166II	GTNNAC	6 cut(s)	351, 537, 1112, 1133, 1324, 1467
Hpy188I	TCNGA	6 cut(s)	49, 111, 128, 242, 276, 1420
Hpy188III	TCNNGA	6 cut(s)	221, 227, 374, 425, 566, 873
Hpy8I	GTNNAC	6 cut(s)	351, 537, 1112, 1133, 1324, 1467
HpyAV	CCTTC	4 cut(s)	8, 831, 990, 1231
HpyCH4III	ACNGT	5 cut(s)	83, 766, 784, 808, 898
HpyCH4IV	ACGT	1 cut(s)	1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 616, 1487
HpyF3I	CTNAG	5 cut(s)	125, 382, 509, 1158, 1185
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	2 cut(s)	1379, 1394
KpnI	GGTACC	1 cut(s)	1305
KroI	GCCGGC	1 cut(s)	1268
KroNI	GCCGGC	1 cut(s)	1270
Ksp22I	TGATCA	2 cut(s)	468, 1147
Kzo9I	GATC	9 cut(s)	208, 217, 223, 229, 244, 389, 421, 468, 1147
LmnI	GCTCC	3 cut(s)	349, 994, 1078
Lsp1109I	GCAGC	4 cut(s)	322, 782, 1490, 1493
LweI	GCATC	2 cut(s)	119, 1367
MaeI	CTAG	4 cut(s)	713, 1070, 1362, 1532
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	5 cut(s)	397, 493, 705, 975, 1542
MalI	GATC	9 cut(s)	210, 219, 225, 231, 246, 391, 423, 470, 1149
MboI	GATC	9 cut(s)	208, 217, 223, 229, 244, 389, 421, 468, 1147
MboII	GAAGA	6 cut(s)	188, 263, 329, 596, 1388, 1487
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	47, 1135
MlyI	GAGTC	3 cut(s)	67, 414, 918
Mph1103I	ATGCAT	1 cut(s)	134
MroNI	GCCGGC	1 cut(s)	1268
MseI	TTAA	3 cut(s)	641, 836, 1472
MspA1I	CMGCKG	2 cut(s)	694, 1145
MspI	CCGG	2 cut(s)	281, 1269
MspR9I	CCNGG	3 cut(s)	881, 1137, 1452
MvaI	CCWGG	3 cut(s)	881, 1137, 1452
MwoI	GCNNNNNNNGC	3 cut(s)	129, 616, 1487
NaeI	GCCGGC	1 cut(s)	1270
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	9 cut(s)	208, 217, 223, 229, 244, 389, 421, 468, 1147
NgoMIV	GCCGGC	1 cut(s)	1268
NheI	GCTAGC	1 cut(s)	1069
NlaIII	CATG	2 cut(s)	1379, 1394
NlaIV	GGNNCC	3 cut(s)	113, 535, 1303
NmuCI	GTSAC	2 cut(s)	493, 975
NsiI	ATGCAT	1 cut(s)	134
PaqCI	CACCTGC	2 cut(s)	1096, 1102
PdiI	GCCGGC	1 cut(s)	1270
PfeI	GAWTC	4 cut(s)	106, 377, 434, 1415
PflMI	CCANNNNNTGG	1 cut(s)	1218
PkrI	GCNGC	4 cut(s)	312, 772, 1480, 1483
PleI	GAGTC	3 cut(s)	67, 413, 917
PpsI	GAGTC	3 cut(s)	67, 413, 917
PshBI	ATTAAT	1 cut(s)	1472
Psp1406I	AACGTT	1 cut(s)	1121
Psp6I	CCWGG	3 cut(s)	879, 1135, 1450
PspEI	GGTNACC	1 cut(s)	975
PspFI	CCCAGC	2 cut(s)	1065, 1211
PspGI	CCWGG	3 cut(s)	879, 1135, 1450
PspN4I	GGNNCC	3 cut(s)	113, 535, 1303
PspPI	GGNCC	6 cut(s)	111, 534, 883, 1109, 1139, 1454
PstI	CTGCAG	2 cut(s)	612, 1492
PstNI	CAGNNNCTG	1 cut(s)	1487
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	2 cut(s)	694, 1145
RsaI	GTAC	3 cut(s)	1303, 1323, 1353
RsaNI	GTAC	3 cut(s)	1302, 1322, 1352
SaqAI	TTAA	3 cut(s)	641, 836, 1472
SatI	GCNGC	4 cut(s)	311, 771, 1479, 1482
Sau3AI	GATC	9 cut(s)	208, 217, 223, 229, 244, 389, 421, 468, 1147
Sau96I	GGNCC	6 cut(s)	111, 534, 883, 1109, 1139, 1454
SchI	GAGTC	3 cut(s)	67, 414, 918
ScrFI	CCNGG	3 cut(s)	881, 1137, 1452
SduI	GDGCHC	2 cut(s)	47, 1135
SfaNI	GCATC	2 cut(s)	119, 1367
SfcI	CTRYAG	3 cut(s)	252, 608, 1488
SinI	GGWCC	5 cut(s)	111, 534, 1109, 1139, 1454
SsiI	CCGC	5 cut(s)	41, 206, 1009, 1116, 1400
SspMI	CTAG	4 cut(s)	713, 1070, 1362, 1532
StyD4I	CCNGG	3 cut(s)	879, 1135, 1450
TaaI	ACNGT	5 cut(s)	83, 766, 784, 808, 898
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	1 cut(s)	549
TatI	WGTACW	1 cut(s)	1321
TfiI	GAWTC	4 cut(s)	106, 377, 434, 1415
Tru1I	TTAA	3 cut(s)	641, 836, 1472
Tru9I	TTAA	3 cut(s)	641, 836, 1472
TscAI	CASTG	5 cut(s)	43, 513, 771, 973, 1111
TseFI	GTSAC	2 cut(s)	493, 975
TseI	GCWGC	4 cut(s)	310, 770, 1478, 1481
Tsp45I	GTSAC	2 cut(s)	493, 975
TspDTI	ATGAA	1 cut(s)	918
TspGWI	ACGGA	2 cut(s)	336, 1356
TspRI	CASTG	5 cut(s)	43, 513, 771, 973, 1111
Van91I	CCANNNNNTGG	1 cut(s)	1218
VneI	GTGCAC	1 cut(s)	1131
VpaK11BI	GGWCC	5 cut(s)	111, 534, 1109, 1139, 1454
VspI	ATTAAT	1 cut(s)	1472
XagI	CCTNNNNNAGG	1 cut(s)	548
XapI	RAATTY	4 cut(s)	478, 560, 670, 748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	698
XspI	CTAG	4 cut(s)	713, 1070, 1362, 1532
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.