Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010943

Physical Location & Seq

Genomic Coordinates Reverse (-)

7038147 .. 7042235

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGAGCCTGAGTCTCACTCATTCTTCTCTATGCTATGGGAAAGACTGAAGGAGAGCAGGGTTTGGTTTCCAGTGCGGGCGGCTCTGACCACCCCTCATCCCAAAATGCAGAGACTCACTACTGTCCTTTTTGCGGATCACGGCGATCTGGATCTTGATCCAAAGTTCAGAGATCATTCTATAGTAGCAAGTTTCAATCTTTGGAAGCCGGTTTCTTTGCTGGAGGATAATGTCTTGCAGCTTGAAGATAACATTTTTGATGAGATAGTTGCTCCTTCAACTAAAGTGGTTATCCTATCTCTGGAATCCTTAGCTGGATCAAATGTAACAAGAGTCGTATTTGGGGTTGATCCTGACCCAGAATCATCAAAGTTATTGCCAACTTCTCAAAGTTTGATCAAAGAAAATTTTGAATATCTGGTCACATACCAATCACTGAGCCTAAATACATCCTTGTTTGGGCCCACATCCTTTTTCGAGGTGCTAAAATTTCCAGATGGAATTACCATAATTCCACCACAGAAAGCGTTTCTTCTGCAGAAAGTGCAAATCCTTTTCAATTTCACCTTAAACTTCTCTATCTATCAAATACAACTAAATTTCAATGAACTGGAAAGCCAGTTGAAGTCTGGGTTACATCTAGCACCCTATGAGAACCTTTATGTTAGCTTGTCAAATTCAAAAGGTTCAACAGTGGCAGCCCCTACTACTGTTCAGTCATCTGTTCTATTGACAGTTGGCAATACTCCTTCAATGCAAAGATTAAAACAACTGGCTCAAACCATCACACATTCTCATTCAAGAAACTTGGGCCTGAATAATACAGTATTTGGTAGAGTCAAGCAAGTTCGTCTTTCATCTATTTTGCAACATTCCCTCAATGGTGGAGATGGCACTGCATGGTCACCTTCTCCTGCTCCATTGCCTCATCCCCACCCCCCCCATCACGCCCACCATCACCACCACCACCACCATCGCCATCACCACAATTCCCAGCTAGTTCCTGCAATTTCACCTGCACCTGCAACAGGCAGTGGTCCACCCGCAACGTTCAAAGGTGCACCTGGACCAGCTGATCATTCACCTAAGCCACACAAAAGTTTGCCTGCACCTGAGAAAAGTTGTGAAGCAAAGCCTCCCAGCTTTTGGTCTGGTCATAGAGGGAAGGCTGGAAAGCAGTCTCGTTTATCCCCTGCCGGTGCACCAGATGTTTCTCCTCCCGTCTTTGGTACCTCACCCCAAAAGCAAGTACACCCATCAGCACCCATTTCTCGTTCAGTACCAGCATCTAGTCCGTTGCCTCATGTAGTTTTTGCTCATGTTCTTCCGCCATCAAAGAGTGAATCAGATAGTAGCCATTCTTACACAGGGCAATCACCTGGACCATCGCCGTCAACATCAGCTTCTGCAGGTCTTGTACCTTGTGTTCAATGGGCATTATCACTATTCCTAGCTTTGGTGTTACTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

491

Amino Acids

53.3

Weight (kDa)

8.9

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	64 - 154	7.4e-27	Domain of unknown function (DUF7036)
DUF7036	PF23041	187 - 278	3.3e-23	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56590 AT3G56590
fragaria_vesca	FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240
prunus_persica	Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494681
rosa_laevigata	RLG00000022664
rosa_multiflora	Rmu_sc0000840.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390970
rosa_rugosa	Rorug03G0268000 Rorug03G0268000 Rorug03G0268000
rosa_samantha	Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400
rosa_wichuraiana	Rw3G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1471
AarI	CACCTGC	2 cut(s)	1024, 1030
Acc36I	ACCTGC	3 cut(s)	1024, 1030, 1400
Acc65I	GGTACC	1 cut(s)	1229
AccB1I	GGYRCC	1 cut(s)	1229
AccB7I	CCANNNNNTGG	1 cut(s)	1146
AciI	CCGC	5 cut(s)	76, 80, 134, 1044, 1328
AclI	AACGTT	1 cut(s)	1049
AclWI	GGATC	5 cut(s)	144, 152, 159, 325, 344
AcsI	RAATTY	4 cut(s)	406, 488, 598, 676
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	4 cut(s)	1231, 1251, 1281, 1419
AfiI	CCNNNNNNNGG	7 cut(s)	133, 301, 459, 1028, 1146, 1226, 1456
AjnI	CCWGG	2 cut(s)	1063, 1378
AluBI	AGCT	8 cut(s)	241, 314, 669, 997, 1073, 1143, 1403, 1454
AluI	AGCT	8 cut(s)	241, 314, 669, 997, 1073, 1143, 1403, 1454
Alw21I	GWGCWC	2 cut(s)	1063, 1204
Alw26I	GTCTC	3 cut(s)	18, 106, 1185
Alw44I	GTGCAC	2 cut(s)	1059, 1200
AlwI	GGATC	5 cut(s)	144, 152, 159, 325, 344
AlwNI	CAGNNNCTG	1 cut(s)	1406
AoxI	GGCC	2 cut(s)	461, 811
ApaI	GGGCCC	1 cut(s)	465
ApaLI	GTGCAC	2 cut(s)	1059, 1200
ApeKI	GCWGC	2 cut(s)	238, 698
ApoI	RAATTY	4 cut(s)	406, 488, 598, 676
Asp718I	GGTACC	1 cut(s)	1229
AspS9I	GGNCC	6 cut(s)	461, 462, 811, 1037, 1067, 1382
AsuHPI	GGTGA	8 cut(s)	556, 897, 950, 974, 1005, 1074, 1227, 1368
AvaII	GGWCC	3 cut(s)	1037, 1067, 1382
BaeGI	GKGCMC	3 cut(s)	465, 1063, 1204
BanI	GGYRCC	1 cut(s)	1229
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	1063, 1204
BbvI	GCAGC	2 cut(s)	250, 710
BceAI	ACGGC	2 cut(s)	157, 1375
BciT130I	CCWGG	2 cut(s)	1065, 1380
BclI	TGATCA	2 cut(s)	396, 1075
BcoDI	GTCTC	3 cut(s)	18, 106, 1185
BfaI	CTAG	4 cut(s)	641, 998, 1290, 1451
BfmI	CTRYAG	3 cut(s)	180, 536, 1407
BfuAI	ACCTGC	3 cut(s)	1024, 1030, 1400
BisI	GCNGC	3 cut(s)	81, 239, 699
BlsI	GCNGC	3 cut(s)	82, 240, 700
Bme1390I	CCNGG	2 cut(s)	1065, 1380
Bme18I	GGWCC	3 cut(s)	1037, 1067, 1382
BmgT120I	GGNCC	6 cut(s)	461, 462, 811, 1037, 1067, 1382
BmiI	GGNNCC	3 cut(s)	6, 463, 1231
BmrFI	CCNGG	2 cut(s)	1065, 1380
BmsI	GCATC	1 cut(s)	1295
BplI	GAGNNNNNCTC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	310, 1086
BsaBI	GATNNNNATC	2 cut(s)	150, 156
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	7 cut(s)	133, 301, 459, 1028, 1146, 1226, 1456
Bse118I	RCCGGY	2 cut(s)	208, 1196
Bse1I	ACTGG	4 cut(s)	71, 615, 619, 777
Bse3DI	GCAATG	1 cut(s)	920
Bse8I	GATNNNNATC	2 cut(s)	150, 156
BseBI	CCWGG	2 cut(s)	1065, 1380
BseGI	GGATG	4 cut(s)	97, 449, 467, 928
BseJI	GATNNNNATC	2 cut(s)	150, 156
BseLI	CCNNNNNNNGG	7 cut(s)	133, 301, 459, 1028, 1146, 1226, 1456
BseMI	GCAATG	1 cut(s)	920
BseMII	CTCAG	2 cut(s)	428, 1104
BseNI	ACTGG	4 cut(s)	71, 615, 619, 777
BseRI	GAGGAG	1 cut(s)	1206
BseSI	GKGCMC	3 cut(s)	465, 1063, 1204
BseXI	GCAGC	2 cut(s)	250, 710
BseYI	CCCAGC	2 cut(s)	993, 1139
BsgI	GTGCAG	2 cut(s)	1002, 1092
BshFI	GGCC	2 cut(s)	463, 813
BshNI	GGYRCC	1 cut(s)	1229
BsiHKAI	GWGCWC	2 cut(s)	1063, 1204
BsiSI	CCGG	2 cut(s)	209, 1197
BslI	CCNNNNNNNGG	7 cut(s)	133, 301, 459, 1028, 1146, 1226, 1456
BsmAI	GTCTC	3 cut(s)	18, 106, 1185
BsnI	GGCC	2 cut(s)	463, 813
Bsp120I	GGGCCC	1 cut(s)	461
Bsp1286I	GDGCHC	3 cut(s)	465, 1063, 1204
Bsp143I	GATC	9 cut(s)	136, 145, 151, 157, 172, 317, 349, 396, 1075
BspACI	CCGC	5 cut(s)	76, 80, 134, 1044, 1328
BspANI	GGCC	2 cut(s)	463, 813
BspCNI	CTCAG	2 cut(s)	429, 1105
BspLI	GGNNCC	3 cut(s)	6, 463, 1231
BspMAI	CTGCAG	2 cut(s)	540, 1411
BspMI	ACCTGC	3 cut(s)	1024, 1030, 1400
BspPI	GGATC	5 cut(s)	144, 152, 159, 325, 344
BspT107I	GGYRCC	1 cut(s)	1229
BsrDI	GCAATG	1 cut(s)	920
BsrFI	RCCGGY	2 cut(s)	208, 1196
BsrI	ACTGG	4 cut(s)	71, 615, 619, 777
BssAI	RCCGGY	2 cut(s)	208, 1196
BssMI	GATC	9 cut(s)	136, 145, 151, 157, 172, 317, 349, 396, 1075
Bst2UI	CCWGG	2 cut(s)	1065, 1380
Bst4CI	ACNGT	5 cut(s)	124, 694, 712, 736, 826
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	78, 1107
BstDEI	CTNAG	5 cut(s)	9, 310, 437, 1086, 1113
BstEII	GGTNACC	1 cut(s)	903
BstENI	CCTNNNNNAGG	1 cut(s)	1026
BstF5I	GGATG	4 cut(s)	97, 449, 467, 928
BstKTI	GATC	9 cut(s)	139, 148, 154, 160, 175, 320, 352, 399, 1078
BstMAI	GTCTC	3 cut(s)	18, 106, 1185
BstMBI	GATC	9 cut(s)	136, 145, 151, 157, 172, 317, 349, 396, 1075
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	2 cut(s)	1065, 1380
BstPI	GGTNACC	1 cut(s)	903
BstSCI	CCNGG	2 cut(s)	1063, 1378
BstSFI	CTRYAG	3 cut(s)	180, 536, 1407
BstSLI	GKGCMC	3 cut(s)	465, 1063, 1204
BstV1I	GCAGC	2 cut(s)	250, 710
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	463, 813
BtgZI	GCGATG	2 cut(s)	959, 1371
BtsCI	GGATG	4 cut(s)	97, 449, 467, 928
BtsI	GCAGTG	2 cut(s)	894, 1039
BtsIMutI	CAGTG	5 cut(s)	78, 434, 699, 894, 1039
BveI	ACCTGC	3 cut(s)	1024, 1030, 1400
Cac8I	GCNNGC	2 cut(s)	78, 1107
CaiI	CAGNNNCTG	1 cut(s)	1406
Cfr10I	RCCGGY	2 cut(s)	208, 1196
Cfr13I	GGNCC	6 cut(s)	461, 462, 811, 1037, 1067, 1382
Csp6I	GTAC	4 cut(s)	1230, 1250, 1280, 1418
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	3 cut(s)	900, 1304, 1319
CviQI	GTAC	4 cut(s)	1230, 1250, 1280, 1418
DdeI	CTNAG	5 cut(s)	9, 310, 437, 1086, 1113
DpnI	GATC	9 cut(s)	138, 147, 153, 159, 174, 319, 351, 398, 1077
DpnII	GATC	9 cut(s)	136, 145, 151, 157, 172, 317, 349, 396, 1075
EciI	GGCGGA	1 cut(s)	1317
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	3 cut(s)	1037, 1067, 1382
Eco57I	CTGAAG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	903
EcoNI	CCTNNNNNAGG	1 cut(s)	1026
EcoO65I	GGTNACC	1 cut(s)	903
EcoRII	CCWGG	2 cut(s)	1063, 1378
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	3 cut(s)	903, 1307, 1322
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 837, 869
FatI	CATG	3 cut(s)	899, 1303, 1318
FauI	CCCGC	2 cut(s)	69, 1051
FbaI	TGATCA	2 cut(s)	396, 1075
Fnu4HI	GCNGC	3 cut(s)	81, 239, 699
FokI	GGATG	4 cut(s)	84, 436, 454, 915
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	3 cut(s)	81, 239, 699
FspBI	CTAG	4 cut(s)	641, 998, 1290, 1451
GluI	GCNGC	3 cut(s)	81, 239, 699
GsaI	CCCAGC	2 cut(s)	997, 1143
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	463, 813
HapII	CCGG	2 cut(s)	209, 1197
Hin1II	CATG	3 cut(s)	903, 1307, 1322
HincII	GTYRAC	1 cut(s)	1395
HindII	GTYRAC	1 cut(s)	1395
HinfI	GANTC	7 cut(s)	11, 114, 305, 333, 362, 837, 1343
HpaII	CCGG	2 cut(s)	209, 1197
HphI	GGTGA	8 cut(s)	556, 897, 950, 974, 1005, 1074, 1227, 1368
Hpy166II	GTNNAC	5 cut(s)	1040, 1061, 1202, 1252, 1395
Hpy188I	TCNGA	3 cut(s)	87, 170, 1348
Hpy188III	TCNNGA	6 cut(s)	149, 155, 302, 353, 494, 801
Hpy8I	GTNNAC	5 cut(s)	1040, 1061, 1202, 1252, 1395
HpyAV	CCTTC	5 cut(s)	43, 285, 759, 918, 1159
HpyCH4III	ACNGT	5 cut(s)	124, 694, 712, 736, 826
HpyCH4IV	ACGT	1 cut(s)	1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	5 cut(s)	9, 310, 437, 1086, 1113
HpySE526I	ACGT	1 cut(s)	1049
Hsp92II	CATG	3 cut(s)	903, 1307, 1322
KpnI	GGTACC	1 cut(s)	1233
Ksp22I	TGATCA	2 cut(s)	396, 1075
Kzo9I	GATC	9 cut(s)	136, 145, 151, 157, 172, 317, 349, 396, 1075
LmnI	GCTCC	3 cut(s)	4, 277, 922
Lsp1109I	GCAGC	2 cut(s)	250, 710
LweI	GCATC	1 cut(s)	1295
MaeI	CTAG	4 cut(s)	641, 998, 1290, 1451
MaeII	ACGT	1 cut(s)	1049
MaeIII	GTNAC	5 cut(s)	325, 421, 633, 903, 1461
MalI	GATC	9 cut(s)	138, 147, 153, 159, 174, 319, 351, 398, 1077
MboI	GATC	9 cut(s)	136, 145, 151, 157, 172, 317, 349, 396, 1075
MboII	GAAGA	4 cut(s)	16, 257, 524, 1316
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	3 cut(s)	465, 1063, 1204
MluCI	AATT	9 cut(s)	406, 488, 501, 510, 559, 598, 676, 988, 1008
MlyI	GAGTC	4 cut(s)	20, 108, 342, 846
MseI	TTAA	2 cut(s)	569, 764
MspA1I	CMGCKG	1 cut(s)	1073
MspI	CCGG	2 cut(s)	209, 1197
MspR9I	CCNGG	2 cut(s)	1065, 1380
MvaI	CCWGG	2 cut(s)	1065, 1380
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	9 cut(s)	136, 145, 151, 157, 172, 317, 349, 396, 1075
NlaIII	CATG	3 cut(s)	903, 1307, 1322
NlaIV	GGNNCC	3 cut(s)	6, 463, 1231
NmuCI	GTSAC	2 cut(s)	421, 903
PaqCI	CACCTGC	2 cut(s)	1024, 1030
PfeI	GAWTC	3 cut(s)	305, 362, 1343
PflMI	CCANNNNNTGG	1 cut(s)	1146
PkrI	GCNGC	3 cut(s)	82, 240, 700
PleI	GAGTC	4 cut(s)	19, 108, 341, 845
PpsI	GAGTC	4 cut(s)	19, 108, 341, 845
PsiI	TTATAA	1 cut(s)	1471
Psp1406I	AACGTT	1 cut(s)	1049
Psp6I	CCWGG	2 cut(s)	1063, 1378
PspEI	GGTNACC	1 cut(s)	903
PspFI	CCCAGC	2 cut(s)	993, 1139
PspGI	CCWGG	2 cut(s)	1063, 1378
PspN4I	GGNNCC	3 cut(s)	6, 463, 1231
PspOMI	GGGCCC	1 cut(s)	461
PspPI	GGNCC	6 cut(s)	461, 462, 811, 1037, 1067, 1382
PsrI	GAACNNNNNNTAC	2 cut(s)	1410, 1442
PstI	CTGCAG	2 cut(s)	540, 1411
PstNI	CAGNNNCTG	1 cut(s)	1406
PsuI	RGATCY	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	1073
RsaI	GTAC	4 cut(s)	1231, 1251, 1281, 1419
RsaNI	GTAC	4 cut(s)	1230, 1250, 1280, 1418
SaqAI	TTAA	2 cut(s)	569, 764
SatI	GCNGC	3 cut(s)	81, 239, 699
Sau3AI	GATC	9 cut(s)	136, 145, 151, 157, 172, 317, 349, 396, 1075
Sau96I	GGNCC	6 cut(s)	461, 462, 811, 1037, 1067, 1382
SchI	GAGTC	4 cut(s)	20, 108, 342, 846
ScrFI	CCNGG	2 cut(s)	1065, 1380
SduI	GDGCHC	3 cut(s)	465, 1063, 1204
SfaNI	GCATC	1 cut(s)	1295
SfcI	CTRYAG	3 cut(s)	180, 536, 1407
SinI	GGWCC	3 cut(s)	1037, 1067, 1382
Sse9I	AATT	9 cut(s)	406, 488, 501, 510, 559, 598, 676, 988, 1008
SsiI	CCGC	5 cut(s)	76, 80, 134, 1044, 1328
SspMI	CTAG	4 cut(s)	641, 998, 1290, 1451
StyD4I	CCNGG	2 cut(s)	1063, 1378
TaaI	ACNGT	5 cut(s)	124, 694, 712, 736, 826
TaiI	ACGT	1 cut(s)	1052
TaqI	TCGA	1 cut(s)	477
TasI	AATT	9 cut(s)	406, 488, 501, 510, 559, 598, 676, 988, 1008
TatI	WGTACW	1 cut(s)	1249
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	305, 362, 1343
Tru1I	TTAA	2 cut(s)	569, 764
Tru9I	TTAA	2 cut(s)	569, 764
TscAI	CASTG	5 cut(s)	78, 441, 699, 901, 1039
TseFI	GTSAC	2 cut(s)	421, 903
TseI	GCWGC	2 cut(s)	238, 698
Tsp45I	GTSAC	2 cut(s)	421, 903
TspDTI	ATGAA	2 cut(s)	621, 846
TspGWI	ACGGA	1 cut(s)	1284
TspRI	CASTG	5 cut(s)	78, 441, 699, 901, 1039
Van91I	CCANNNNNTGG	1 cut(s)	1146
VneI	GTGCAC	2 cut(s)	1059, 1200
VpaK11BI	GGWCC	3 cut(s)	1037, 1067, 1382
XagI	CCTNNNNNAGG	1 cut(s)	1026
XapI	RAATTY	4 cut(s)	406, 488, 598, 676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XspI	CTAG	4 cut(s)	641, 998, 1290, 1451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.