AT3G56810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012262
Physical Location & Seq
Reverse (-)
21036711 .. 21039074
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56810.1

Sequence Viewer

Length: 999 bp
ATGAAGAAGAGTAAACGAGAGAACTTGCTTTCTCCTTCATCTTCATGGCGGGAAAACCATAATCCTCCACGGAGAAACTCAAACTCCTCCGCCGTCTCCTCCGGCTGCCTCCCCGGGTTCTTCAACCTCTTCCTCTCCACCTTCAACCGCCGCAAATCCATCACCTTGGGATCTAAAAAGCGAGAACAAAGAACCGTCGTTTACGCTTCTCCTCCGCAAGATTCATCAAACGGACAAGGCGGAGGAATCGTTGCGCCACCGCTTCCGCACAATGAAGGAGAGGGAGATGCGGCGAGAGTTAGTCTAGTCGGAGCACTAGAGAAATGTGATCGGGACTTAGAGGAGCTAAGAAGAACCATCGACGTCATCAAAACCACTTACATTCTTCACAAGAGACTTGAGGTTTCTCCGCCGACCACACGTGAGAATTTTAAATTCTCCGGCACCGTACTGGCAGGAGATGTCGTCGTGGGGACGCACACGCAGAAGAACACGAAGACGACACAACACGAACCAGACACAGACACGATGTTGTCGATGATGAACCATCACGAATATTGCTGCAAAGACAACAAACCCTACAAAGTCAACAATATAAATCTAATCACTAGACCCGATCATTACTCCATTCATGACGTCATTTCCAAGAGATCAACGTCAACGACGACGACAGAGTCATGTGGCACGTTGCCCCTTGTGGTGCGGAGGGTAAGACGGAGCTTGATGGAGAGCGTGAACCAAGTTTGTGATGACGTGGCATCTGGTCAACGAAGAGAGGTCGCTAAAATCGGTTTGGCTCTTCATGATCACATCTGTCGCGACTTGATCGCAGAGACCGTTCGAGAGCTCTCCTTCTCTGACTACGACGACGACGAGTTTTATCAATCGCCGGTGGATTCTTCTGTTTGTTACGGCGGAGGAGGTAAAGGCCAACACATCCGACGTGGCAGCAGCAACTCTCTCCCATTCGACGCGTGTCGAAGAAGATTAGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

332

Amino Acids

37.09

Weight (kDa)

9.01

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 673
AatII GACGTC 2 cut(s) 366, 639
AccB1I GGYRCC 1 cut(s) 443
AccII CGCG 2 cut(s) 819, 974
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 2 cut(s) 427, 434
AcvI CACGTG 1 cut(s) 422
AcyI GRCGYC 2 cut(s) 363, 636
AfaI GTAC 1 cut(s) 450
AflIII ACRYGT 2 cut(s) 419, 972
AgsI TTSAA 2 cut(s) 124, 145
AjiI CACGTC 2 cut(s) 754, 944
AluBI AGCT 3 cut(s) 346, 720, 847
AluI AGCT 3 cut(s) 346, 720, 847
Alw21I GWGCWC 2 cut(s) 316, 849
Alw26I GTCTC 3 cut(s) 100, 388, 827
AlwI GGATC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 928
ApeKI GCWGC 4 cut(s) 105, 561, 948, 951
ApoI RAATTY 2 cut(s) 427, 434
AspLEI GCGC 1 cut(s) 256
AsuC2I CCSGG 2 cut(s) 114, 115
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 113
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 849
BbrPI CACGTG 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 2 cut(s) 316, 849
BbvI GCAGC 4 cut(s) 92, 548, 960, 963
BccI CCATC 4 cut(s) 167, 365, 555, 718
BceAI ACGGC 2 cut(s) 77, 928
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 2 cut(s) 114, 115
BcoDI GTCTC 3 cut(s) 100, 388, 827
BfaI CTAG 3 cut(s) 305, 317, 609
BisI GCNGC 6 cut(s) 106, 151, 291, 562, 949, 952
BlsI GCNGC 6 cut(s) 107, 152, 292, 563, 950, 953
Bme1390I CCNGG 2 cut(s) 114, 115
BmeT110I CYCGRG 1 cut(s) 113
BmgBI CACGTC 2 cut(s) 754, 944
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 2 cut(s) 114, 115
BmsI GCATC 2 cut(s) 277, 767
BoxI GACNNNNGTC 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 114, 115
BsaAI YACGTR 1 cut(s) 422
BsaHI GRCGYC 2 cut(s) 363, 636
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 4 cut(s) 68, 112, 113, 165
BsaXI ACNNNNNCTCC 6 cut(s) 68, 98, 234, 264, 450, 480
Bse118I RCCGGY 1 cut(s) 889
Bse1I ACTGG 1 cut(s) 456
BseDI CCNNGG 4 cut(s) 68, 112, 113, 165
BseGI GGATG 1 cut(s) 936
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 5 cut(s) 76, 88, 201, 356, 933
BseXI GCAGC 4 cut(s) 92, 548, 960, 963
Bsh1236I CGCG 2 cut(s) 819, 974
BshFI GGCC 1 cut(s) 930
BshNI GGYRCC 1 cut(s) 443
BsiHKAI GWGCWC 2 cut(s) 316, 849
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 4 cut(s) 102, 114, 441, 890
BslFI GGGAC 2 cut(s) 347, 487
BsmAI GTCTC 3 cut(s) 100, 388, 827
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 347, 487
BsnI GGCC 1 cut(s) 930
Bso31I GGTCTC 1 cut(s) 827
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 316, 849
Bsp143I GATC 6 cut(s) 170, 328, 616, 650, 805, 825
Bsp68I TCGCGA 1 cut(s) 819
BspANI GGCC 1 cut(s) 930
BspFNI CGCG 2 cut(s) 819, 974
BspHI TCATGA 2 cut(s) 631, 802
BspLI GGNNCC 1 cut(s) 445
BspPI GGATC 1 cut(s) 178
BspQI GCTCTTC 1 cut(s) 804
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 827
BsrFI RCCGGY 1 cut(s) 889
BsrI ACTGG 1 cut(s) 456
BssAI RCCGGY 1 cut(s) 889
BssECI CCNNGG 4 cut(s) 68, 112, 113, 165
BssMI GATC 6 cut(s) 170, 328, 616, 650, 805, 825
BssNI GRCGYC 2 cut(s) 363, 636
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 196, 448, 838
Bst6I CTCTTC 4 cut(s) 2, 134, 766, 804
BstACI GRCGYC 2 cut(s) 363, 636
BstBAI YACGTR 1 cut(s) 422
BstDEI CTNAG 2 cut(s) 337, 347
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 936
BstFNI CGCG 2 cut(s) 819, 974
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 6 cut(s) 173, 331, 619, 653, 808, 828
BstMAI GTCTC 3 cut(s) 100, 388, 827
BstMBI GATC 6 cut(s) 170, 328, 616, 650, 805, 825
BstPAI GACNNNNGTC 1 cut(s) 975
BstSCI CCNGG 2 cut(s) 112, 113
BstUI CGCG 2 cut(s) 819, 974
BstV1I GCAGC 4 cut(s) 92, 548, 960, 963
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 1 cut(s) 930
BtgI CCRYGG 1 cut(s) 68
BtrI CACGTC 2 cut(s) 754, 944
BtsCI GGATG 1 cut(s) 936
BtuMI TCGCGA 1 cut(s) 819
CciI TCATGA 2 cut(s) 631, 802
CfoI GCGC 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 889
Cfr9I CCCGGG 1 cut(s) 113
CseI GACGC 2 cut(s) 484, 980
Csp6I GTAC 1 cut(s) 449
CviAII CATG 4 cut(s) 45, 632, 678, 803
CviJI RGCY 6 cut(s) 105, 346, 720, 797, 847, 930
CviKI_1 RGCY 6 cut(s) 105, 346, 720, 797, 847, 930
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 2 cut(s) 337, 347
DpnI GATC 6 cut(s) 172, 330, 618, 652, 807, 827
DpnII GATC 6 cut(s) 170, 328, 616, 650, 805, 825
DraI TTTAAA 1 cut(s) 433
DrdI GACNNNNNNGTC 1 cut(s) 673
DseDI GACNNNNNNGTC 1 cut(s) 673
Eam1104I CTCTTC 4 cut(s) 2, 134, 766, 804
EarI CTCTTC 4 cut(s) 2, 134, 766, 804
EciI GGCGGA 4 cut(s) 79, 255, 399, 930
Ecl136II GAGCTC 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 849
Eco31I GGTCTC 1 cut(s) 827
Eco53kI GAGCTC 1 cut(s) 847
Eco72I CACGTG 1 cut(s) 422
Eco88I CYCGRG 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 4 cut(s) 48, 635, 681, 806
FaiI YATR 6 cut(s) 46, 60, 596, 633, 679, 804
FaqI GGGAC 2 cut(s) 347, 487
FatI CATG 4 cut(s) 44, 631, 677, 802
FauI CCCGC 1 cut(s) 42
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 6 cut(s) 106, 151, 291, 562, 949, 952
FokI GGATG 1 cut(s) 923
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 6 cut(s) 106, 151, 291, 562, 949, 952
FspBI CTAG 3 cut(s) 305, 317, 609
GlaI GCGC 1 cut(s) 255
GluI GCNGC 6 cut(s) 106, 151, 291, 562, 949, 952
HaeIII GGCC 1 cut(s) 930
HapII CCGG 4 cut(s) 102, 114, 441, 890
HgaI GACGC 2 cut(s) 484, 980
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 2 cut(s) 363, 636
Hin1II CATG 4 cut(s) 48, 635, 681, 806
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 3 cut(s) 589, 660, 767
HindII GTYRAC 3 cut(s) 589, 660, 767
HinfI GANTC 4 cut(s) 221, 246, 674, 896
HpaII CCGG 4 cut(s) 102, 114, 441, 890
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 6 cut(s) 14, 202, 589, 660, 736, 767
Hpy188I TCNGA 3 cut(s) 311, 859, 941
Hpy188III TCNNGA 6 cut(s) 332, 551, 632, 803, 818, 842
Hpy8I GTNNAC 6 cut(s) 14, 202, 589, 660, 736, 767
HpyAV CCTTC 4 cut(s) 45, 151, 269, 862
HpyCH4III ACNGT 3 cut(s) 196, 448, 838
HpyCH4IV ACGT 7 cut(s) 363, 421, 636, 656, 686, 753, 943
HpyCH4V TGCA 1 cut(s) 564
HpyF3I CTNAG 2 cut(s) 337, 347
HpySE526I ACGT 7 cut(s) 363, 421, 636, 656, 686, 753, 943
Hsp92I GRCGYC 2 cut(s) 363, 636
Hsp92II CATG 4 cut(s) 48, 635, 681, 806
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 6 cut(s) 170, 328, 616, 650, 805, 825
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 3 cut(s) 311, 343, 717
LpnPI CCDG 8 cut(s) 115, 127, 437, 441, 454, 528, 747, 903
Lsp1109I GCAGC 4 cut(s) 92, 548, 960, 963
LweI GCATC 2 cut(s) 277, 767
MaeI CTAG 3 cut(s) 305, 317, 609
MaeII ACGT 7 cut(s) 363, 421, 636, 656, 686, 753, 943
MaeIII GTNAC 1 cut(s) 908
MalI GATC 6 cut(s) 172, 330, 618, 652, 807, 827
MboI GATC 6 cut(s) 170, 328, 616, 650, 805, 825
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 2 cut(s) 316, 849
MluCI AATT 2 cut(s) 427, 434
MluI ACGCGT 1 cut(s) 972
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 2 cut(s) 289, 964
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 43
MspI CCGG 4 cut(s) 102, 114, 441, 890
MspR9I CCNGG 2 cut(s) 114, 115
MvnI CGCG 2 cut(s) 819, 974
NciI CCSGG 2 cut(s) 114, 115
NdeII GATC 6 cut(s) 170, 328, 616, 650, 805, 825
NlaIII CATG 4 cut(s) 48, 635, 681, 806
NlaIV GGNNCC 1 cut(s) 445
NruI TCGCGA 1 cut(s) 819
PagI TCATGA 2 cut(s) 631, 802
PciSI GCTCTTC 1 cut(s) 804
PcsI WCGNNNNNNNCGW 4 cut(s) 533, 662, 834, 870
PfeI GAWTC 3 cut(s) 221, 246, 896
PflFI GACNNNGTC 1 cut(s) 673
PkrI GCNGC 6 cut(s) 107, 152, 292, 563, 950, 953
PleI GAGTC 1 cut(s) 682
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 1 cut(s) 682
Ppu21I YACGTR 1 cut(s) 422
PshAI GACNNNNGTC 1 cut(s) 975
Psp124BI GAGCTC 1 cut(s) 849
PspCI CACGTG 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 445
PsuI RGATCY 1 cut(s) 170
PsyI GACNNNGTC 1 cut(s) 673
RruI TCGCGA 1 cut(s) 819
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 849
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 6 cut(s) 106, 151, 291, 562, 949, 952
Sau3AI GATC 6 cut(s) 170, 328, 616, 650, 805, 825
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 2 cut(s) 114, 115
SduI GDGCHC 2 cut(s) 316, 849
SfaNI GCATC 2 cut(s) 277, 767
SgrAI CRCCGGYG 1 cut(s) 889
SmaI CCCGGG 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 427, 434
SspI AATATT 1 cut(s) 557
SspMI CTAG 3 cut(s) 305, 317, 609
SstI GAGCTC 1 cut(s) 849
StyD4I CCNGG 2 cut(s) 112, 113
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 196, 448, 838
TaiI ACGT 7 cut(s) 366, 424, 639, 659, 689, 756, 946
TaqI TCGA 5 cut(s) 360, 536, 841, 969, 979
TasI AATT 2 cut(s) 427, 434
TauI GCSGC 2 cut(s) 153, 293
TfiI GAWTC 3 cut(s) 221, 246, 896
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TseI GCWGC 4 cut(s) 105, 561, 948, 951
TspDTI ATGAA 8 cut(s) 17, 27, 33, 213, 288, 557, 620, 791
TspGWI ACGGA 3 cut(s) 85, 246, 730
TspMI CCCGGG 1 cut(s) 113
Tth111I GACNNNGTC 1 cut(s) 673
XapI RAATTY 2 cut(s) 427, 434
XmaI CCCGGG 1 cut(s) 113
XspI CTAG 3 cut(s) 305, 317, 609
ZraI GACGTC 2 cut(s) 364, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.