Rh3BG353900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012262
Physical Location & Seq
Forward (+)
41670353 .. 41672483
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG353900.1

Sequence Viewer

Length: 1158 bp
ATGAGGCGACAGGACAGCTGCAGTAGTGATTTGCGGTTAGACCCAGCAGCATCTGCCTCTGCTCACCATGGAGATCCGAATGCAAAGACCATGGGCTGCATGTCCGGCATTATTTGCTTTCTCTCCAAATACCACCGTACTAATTTCCGCAAATGCAAATTCCTCACATTTGGGAAAACGCAAAATCAAGAGAAGAATAATGGGCGGGTTGGTAATGGCTCCTCTTCTCCCGGATCGTCATTAACAACAATCCAAGCTCCTTCCACTAACAGAATAGTGGCCCAACTAACAGAATTAAACAAAATTGGAGACAAGTCACCATCCTCGCATATTAGTTATCTCCAGGCAGTCTCATGTAATATTGTGCCAAGAAGCCCGACACTGCCAGCAGATATTCGGCGGCGATCAGCACCATCGCTGGTAATAGCGCGGCTTATGGGGTTGGAAGAGGAAGAGGCTCCATCAATACAAGTTCAAGATCAGTACTACTACTCGAGGATAACTGGCCAGAAGAGGCAACAGCTGCTGGGAGCATTGGAAAAATGCGACCGAGATTTGAAGGCGCTCAAGCAGATGATAGAAGCTGTTGGTGCGCCACCGAAAAAATCAATGGAGGCGATTGACAATACTGTTGTTGTTATTAATAAGGGAATTAAGAAGAGGTCTAGTGATGGTGCTATTTTGAAGAAGAGTAGTAGTGAGCTGCAGCCGAGTTGTGTTTCTGTGCTTGACGACGAGTCCAGTACTCGTTCTCCCTTCAGCAACCCCCACCACCACTACTCCAAGAAACAAATATCGTTCAATATTAATTACGGGCGAGCACAACAAAGGAAGATAGCTGGAGAAGAAGACTACTACTTGAGTAATCCTCCAAGTATAAATAACAAGTTCACTACAGAATCGTCAGTAGCAGCATTTGATGAGAACAAGACCCGTCCTGACTACCATGCTATTGTCGAAGAGAGTACTGTGGATCAAGTGTGTAGAGACATTGCCTGGGGTGAGAAAAGAGAAATGGGAAGAATAGGCTTGGCTTTACAGGACCTTATCTACAAAAACTTGATTCAAGAGCTCGTCGCTGAAATGGATTATTCAAAATATTCTAGTCCTGTGTGCTCACTACCCTTTGAGGCATGTAAGAGAAGACTATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

385

Amino Acids

42.84

Weight (kDa)

9.09

Isoelectric Point (pI)

69.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 430
AciI CCGC 5 cut(s) 34, 148, 205, 400, 430
AclWI GGATC 3 cut(s) 68, 241, 981
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 742
AfaI GTAC 4 cut(s) 139, 485, 745, 967
AgsI TTSAA 6 cut(s) 476, 559, 685, 802, 1067, 1095
AhdI GACNNNNNGTC 1 cut(s) 736
AjnI CCWGG 2 cut(s) 342, 995
AluBI AGCT 7 cut(s) 18, 257, 523, 584, 703, 839, 1072
AluI AGCT 7 cut(s) 18, 257, 523, 584, 703, 839, 1072
Alw21I GWGCWC 3 cut(s) 823, 1074, 1118
Alw26I GTCTC 3 cut(s) 303, 355, 981
AlwI GGATC 3 cut(s) 68, 241, 981
AlwNI CAGNNNCTG 2 cut(s) 53, 526
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 2 cut(s) 279, 505
ApeKI GCWGC 7 cut(s) 18, 47, 96, 523, 703, 706, 911
ApoI RAATTY 1 cut(s) 158
AseI ATTAAT 2 cut(s) 642, 807
AspLEI GCGC 3 cut(s) 430, 565, 595
AspS9I GGNCC 2 cut(s) 280, 1042
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 3 cut(s) 56, 309, 1013
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 1 cut(s) 1042
BalI TGGCCA 1 cut(s) 507
BanII GRGCYC 1 cut(s) 1074
BbsI GAAGAC 2 cut(s) 855, 1150
Bbv12I GWGCWC 3 cut(s) 823, 1074, 1118
BbvI GCAGC 7 cut(s) 5, 59, 83, 510, 690, 718, 923
BccI CCATC 4 cut(s) 328, 421, 469, 665
BciT130I CCWGG 2 cut(s) 344, 997
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 303, 355, 981
BfaI CTAG 2 cut(s) 666, 1104
BfmI CTRYAG 3 cut(s) 19, 704, 894
BfoI RGCGCY 1 cut(s) 566
BisI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 912
BlsI GCNGC 9 cut(s) 20, 49, 98, 402, 432, 525, 705, 708, 913
BmcAI AGTACT 3 cut(s) 485, 745, 967
Bme1390I CCNGG 3 cut(s) 231, 344, 997
Bme18I GGWCC 1 cut(s) 1042
BmeRI GACNNNNNGTC 1 cut(s) 736
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 280, 1042
BmiI GGNNCC 2 cut(s) 220, 459
BmrFI CCNGG 3 cut(s) 231, 344, 997
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 855, 1150
BplI GAGNNNNNCTC 2 cut(s) 853, 885
BpmI CTGGAG 2 cut(s) 326, 861
BpuEI CTTGAG 2 cut(s) 551, 880
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 67, 90, 996
BsaXI ACNNNNNCTCC 4 cut(s) 736, 764, 766, 794
Bse1I ACTGG 2 cut(s) 508, 741
Bse3DI GCAATG 1 cut(s) 990
BseBI CCWGG 2 cut(s) 344, 997
BseDI CCNNGG 3 cut(s) 67, 90, 996
BseGI GGATG 1 cut(s) 320
BseMI GCAATG 1 cut(s) 990
BseNI ACTGG 2 cut(s) 508, 741
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 7 cut(s) 5, 59, 83, 510, 690, 718, 923
BseYI CCCAGC 2 cut(s) 43, 526
Bsh1236I CGCG 1 cut(s) 430
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 2 cut(s) 281, 507
BsiEI CGRYCG 1 cut(s) 550
BsiHKAI GWGCWC 3 cut(s) 823, 1074, 1118
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 2 cut(s) 105, 231
BsmAI GTCTC 3 cut(s) 303, 355, 981
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 2 cut(s) 281, 507
BsoBI CYCGRG 1 cut(s) 493
Bsp1286I GDGCHC 3 cut(s) 823, 1074, 1118
Bsp143I GATC 5 cut(s) 73, 233, 404, 478, 973
Bsp19I CCATGG 2 cut(s) 67, 90
BspACI CCGC 5 cut(s) 34, 148, 205, 400, 430
BspANI GGCC 2 cut(s) 281, 507
BspFNI CGCG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 220, 459
BspMAI CTGCAG 2 cut(s) 23, 708
BspPI GGATC 3 cut(s) 68, 241, 981
BsrDI GCAATG 1 cut(s) 990
BsrI ACTGG 2 cut(s) 508, 741
BssECI CCNNGG 3 cut(s) 67, 90, 996
BssMI GATC 5 cut(s) 73, 233, 404, 478, 973
BssT1I CCWWGG 2 cut(s) 67, 90
Bst2UI CCWGG 2 cut(s) 344, 997
Bst4CI ACNGT 3 cut(s) 137, 631, 970
Bst6I CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 954
BstAPI GCANNNNNTGC 3 cut(s) 53, 114, 523
BstC8I GCNNGC 2 cut(s) 387, 819
BstDSI CCRYGG 2 cut(s) 67, 90
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 430
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 3 cut(s) 430, 565, 595
BstKTI GATC 5 cut(s) 76, 236, 407, 481, 976
BstMAI GTCTC 3 cut(s) 303, 355, 981
BstMBI GATC 5 cut(s) 73, 233, 404, 478, 973
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
BstNI CCWGG 2 cut(s) 344, 997
BstNSI RCATGY 2 cut(s) 103, 1137
BstSCI CCNGG 3 cut(s) 229, 342, 995
BstSFI CTRYAG 3 cut(s) 19, 704, 894
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 7 cut(s) 5, 59, 83, 510, 690, 718, 923
BstV2I GAAGAC 2 cut(s) 855, 1150
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 281, 507
BtgI CCRYGG 2 cut(s) 67, 90
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 1 cut(s) 320
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 387, 819
CaiI CAGNNNCTG 2 cut(s) 53, 526
CfoI GCGC 3 cut(s) 430, 565, 595
Cfr13I GGNCC 2 cut(s) 280, 1042
Csp6I GTAC 4 cut(s) 138, 484, 744, 966
CviAII CATG 6 cut(s) 68, 91, 100, 354, 947, 1134
CviQI GTAC 4 cut(s) 138, 484, 744, 966
DpnI GATC 5 cut(s) 75, 235, 406, 480, 975
DpnII GATC 5 cut(s) 73, 233, 404, 478, 973
DriI GACNNNNNGTC 1 cut(s) 736
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 954
Eam1105I GACNNNNNGTC 1 cut(s) 736
EarI CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 954
Ecl136II GAGCTC 1 cut(s) 1072
Eco130I CCWWGG 2 cut(s) 67, 90
Eco24I GRGCYC 1 cut(s) 1074
Eco47I GGWCC 1 cut(s) 1042
Eco53kI GAGCTC 1 cut(s) 1072
Eco57I CTGAAG 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 1072
EcoO109I RGGNCCY 1 cut(s) 1042
EcoRII CCWGG 2 cut(s) 342, 995
EcoT14I CCWWGG 2 cut(s) 67, 90
EcoT38I GRGCYC 1 cut(s) 1074
ErhI CCWWGG 2 cut(s) 67, 90
FaeI CATG 6 cut(s) 71, 94, 103, 357, 950, 1137
FaiI YATR 9 cut(s) 69, 92, 101, 330, 355, 437, 878, 948, 1135
FatI CATG 6 cut(s) 67, 90, 99, 353, 946, 1133
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 912
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 1074
Fsp4HI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 912
FspBI CTAG 2 cut(s) 666, 1104
GlaI GCGC 3 cut(s) 429, 564, 594
GluI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 912
GsaI CCCAGC 2 cut(s) 47, 530
GsuI CTGGAG 2 cut(s) 326, 861
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 2 cut(s) 281, 507
HapII CCGG 2 cut(s) 105, 231
HhaI GCGC 3 cut(s) 430, 565, 595
Hin1II CATG 6 cut(s) 71, 94, 103, 357, 950, 1137
Hin6I GCGC 3 cut(s) 428, 563, 593
HinP1I GCGC 3 cut(s) 428, 563, 593
HinfI GANTC 3 cut(s) 737, 899, 1063
HpaII CCGG 2 cut(s) 105, 231
HphI GGTGA 3 cut(s) 56, 309, 1013
Hpy166II GTNNAC 1 cut(s) 891
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 188, 476, 938, 1067
Hpy8I GTNNAC 1 cut(s) 891
Hpy99I CGWCG 2 cut(s) 737, 1079
HpyAV CCTTC 3 cut(s) 270, 553, 766
HpyCH4III ACNGT 3 cut(s) 137, 631, 970
HpyCH4V TGCA 5 cut(s) 21, 83, 99, 156, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
Hsp92II CATG 6 cut(s) 71, 94, 103, 357, 950, 1137
HspAI GCGC 3 cut(s) 428, 563, 593
Kzo9I GATC 5 cut(s) 73, 233, 404, 478, 973
LmnI GCTCC 4 cut(s) 224, 262, 463, 530
Lsp1109I GCAGC 7 cut(s) 5, 59, 83, 510, 690, 718, 923
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 666, 1104
MaeIII GTNAC 1 cut(s) 315
MalI GATC 5 cut(s) 75, 235, 406, 480, 975
MboI GATC 5 cut(s) 73, 233, 404, 478, 973
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 823, 1074, 1118
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 6 cut(s) 142, 158, 293, 303, 651, 808
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 1 cut(s) 746
MmeI TCCRAC 1 cut(s) 423
Mox20I TGGCCA 1 cut(s) 507
MscI TGGCCA 1 cut(s) 507
MseI TTAA 5 cut(s) 242, 296, 642, 654, 807
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 18, 523
MspI CCGG 2 cut(s) 105, 231
MspR9I CCNGG 3 cut(s) 231, 344, 997
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 2 cut(s) 344, 997
MvnI CGCG 1 cut(s) 430
MwoI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 2 cut(s) 67, 90
NdeII GATC 5 cut(s) 73, 233, 404, 478, 973
NlaIII CATG 6 cut(s) 71, 94, 103, 357, 950, 1137
NlaIV GGNNCC 2 cut(s) 220, 459
NmeAIII GCCGAG 1 cut(s) 735
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 2 cut(s) 103, 1137
PaeR7I CTCGAG 1 cut(s) 493
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 899, 1063
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 9 cut(s) 20, 49, 98, 402, 432, 525, 705, 708, 913
PleI GAGTC 1 cut(s) 745
PpsI GAGTC 1 cut(s) 745
PpuMI RGGWCCY 1 cut(s) 1042
PshBI ATTAAT 2 cut(s) 642, 807
Psp124BI GAGCTC 1 cut(s) 1074
Psp5II RGGWCCY 1 cut(s) 1042
Psp6I CCWGG 2 cut(s) 342, 995
PspFI CCCAGC 2 cut(s) 43, 526
PspGI CCWGG 2 cut(s) 342, 995
PspN4I GGNNCC 2 cut(s) 220, 459
PspPI GGNCC 2 cut(s) 280, 1042
PspPPI RGGWCCY 1 cut(s) 1042
PspXI VCTCGAGB 1 cut(s) 493
PstI CTGCAG 2 cut(s) 23, 708
PstNI CAGNNNCTG 2 cut(s) 53, 526
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 18, 523
RsaI GTAC 4 cut(s) 139, 485, 745, 967
RsaNI GTAC 4 cut(s) 138, 484, 744, 966
SacI GAGCTC 1 cut(s) 1074
SaqAI TTAA 5 cut(s) 242, 296, 642, 654, 807
SatI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 912
Sau3AI GATC 5 cut(s) 73, 233, 404, 478, 973
Sau96I GGNCC 2 cut(s) 280, 1042
ScaI AGTACT 3 cut(s) 485, 745, 967
SchI GAGTC 1 cut(s) 746
ScrFI CCNGG 3 cut(s) 231, 344, 997
SduI GDGCHC 3 cut(s) 823, 1074, 1118
SetI ASST 9 cut(s) 20, 259, 525, 586, 665, 705, 841, 1047, 1074
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 3 cut(s) 19, 704, 894
Sfr274I CTCGAG 1 cut(s) 493
SinI GGWCC 1 cut(s) 1042
SlaI CTCGAG 1 cut(s) 493
SmlI CTYRAG 3 cut(s) 493, 566, 859
SmoI CTYRAG 3 cut(s) 493, 566, 859
Sse9I AATT 6 cut(s) 142, 158, 293, 303, 651, 808
SsiI CCGC 5 cut(s) 34, 148, 205, 400, 430
SspI AATATT 3 cut(s) 361, 805, 1100
SspMI CTAG 2 cut(s) 666, 1104
SstI GAGCTC 1 cut(s) 1074
StyD4I CCNGG 3 cut(s) 229, 342, 995
StyI CCWWGG 2 cut(s) 67, 90
TaaI ACNGT 3 cut(s) 137, 631, 970
TaqI TCGA 2 cut(s) 494, 957
TaqII GACCGA 1 cut(s) 564
TasI AATT 6 cut(s) 142, 158, 293, 303, 651, 808
TatI WGTACW 3 cut(s) 483, 743, 965
TauI GCSGC 2 cut(s) 403, 433
TfiI GAWTC 2 cut(s) 899, 1063
Tru1I TTAA 5 cut(s) 242, 296, 642, 654, 807
Tru9I TTAA 5 cut(s) 242, 296, 642, 654, 807
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 7 cut(s) 18, 47, 96, 523, 703, 706, 911
Tsp45I GTSAC 1 cut(s) 315
TspRI CASTG 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 1042
VspI ATTAAT 2 cut(s) 642, 807
XapI RAATTY 1 cut(s) 158
XceI RCATGY 2 cut(s) 103, 1137
XhoI CTCGAG 1 cut(s) 493
XspI CTAG 2 cut(s) 666, 1104
ZrmI AGTACT 3 cut(s) 485, 745, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.