Rh3DG353000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012262
Physical Location & Seq
Forward (+)
42489105 .. 42491226
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG353000.1

Sequence Viewer

Length: 1149 bp
ATGAGACGACAGGACAGCTGCAGTAGTGATTTGCGGTTAGACCCAGCAGCATCTGCCTCTGCTCACCATGGAGATCCGAATGCAAAGACCATGGGCTGCATGTCCGGCATTATTTGCTTTCTCTCCAAATACCACCGTACTAATTTCCGCAAATGCAAATTCCTCACATTTGGGAAAACGCAAAATCAAGAGAAGAATAATGGGCGGGTTGGTAATGGTTCCTCTTCTCCCGGATCGTCATCAACAACAATCCAAGCTGCTTCAACTAACAGAATAGTGGCCCAACTAACAGAATTAAACAAAATTGGAGACAAGTCACCATCCTCGCATATTAGTTATCTCCAGGCAGTCTCATGTAATATTGTGCCAAGAAGCCCGACACTTCCAGCAGATATTCGGCGGCGATCAGCACCATCGCTGGTAATAGCGCGGCTTATGGGGTTGGAAGAGGAAGAGGCTCCATCAATACAAGTTCAAGATCAGTACTACTACTCGAGGATAACTGGCCAGAAGAGGCAACAGCTGCTGGGAGCATTGGAAAAATGCGACCGAGATTTGAAGGCGCTCAAGCAGATGATAGAAGCTGTTGGTGCGCCACCGAAAAAATCAATGGAGGCGATTGACAATACTGTTGTTGTTATTAATAAGGGAATTAAGAAGAGGTCTAGTGATGGTGCTATTTTGAGGAAGAGTAGTAGTGAGCTGCAGCCGCCTGTGCTTGACGACGAGTCCAGTACTCGTTCTCCCTTCAGCAACCCCCACCATCACTACTCCAAGAAACAAATATCGTTCAATATTAATTACGGGCGAGCACAACAAAGGAAGATAGCTGGAGAAGAAGACTACTACTTGAGTAATCCTTCAAGTATAAATAACAAGTTCACTACAGAAACGTCAGTAGCAGCATTTGATGAGAACAAGACCCGTCCCGACTACCATGCTATTGTCGAAGAGAGTACTGTGGATCAAGTGTGTAGAGACATTGCCTGGGGTGAGAAAAGAGAAATGGGAAGAATAGGCCTGGCTTTACAGGACCTTATCTACAAAAACTTGATTCAAGAGCTCGTCGCTGAAATGGATTATTCAAAATATTCTAGTCCTGTGTGCTCACTACCCTTTGAGGCATGTAAGAGAAGACTATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

382

Amino Acids

42.54

Weight (kDa)

9.13

Isoelectric Point (pI)

69.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 430
AciI CCGC 6 cut(s) 34, 148, 205, 400, 430, 710
AclWI GGATC 3 cut(s) 68, 241, 972
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 733
AfaI GTAC 4 cut(s) 139, 485, 736, 958
AgsI TTSAA 7 cut(s) 264, 476, 559, 793, 864, 1058, 1086
AhdI GACNNNNNGTC 1 cut(s) 727
AjnI CCWGG 3 cut(s) 342, 986, 1020
AluBI AGCT 7 cut(s) 18, 257, 523, 584, 703, 830, 1063
AluI AGCT 7 cut(s) 18, 257, 523, 584, 703, 830, 1063
Alw21I GWGCWC 3 cut(s) 814, 1065, 1109
Alw26I GTCTC 3 cut(s) 303, 355, 972
AlwI GGATC 3 cut(s) 68, 241, 972
AlwNI CAGNNNCTG 2 cut(s) 53, 526
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 3 cut(s) 279, 505, 1018
ApeKI GCWGC 8 cut(s) 18, 47, 96, 257, 523, 703, 706, 902
ApoI RAATTY 1 cut(s) 158
AseI ATTAAT 2 cut(s) 642, 798
AspLEI GCGC 3 cut(s) 430, 565, 595
AspS9I GGNCC 2 cut(s) 280, 1033
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 3 cut(s) 56, 309, 1004
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 507
BanII GRGCYC 1 cut(s) 1065
BbsI GAAGAC 2 cut(s) 846, 1141
Bbv12I GWGCWC 3 cut(s) 814, 1065, 1109
BbvI GCAGC 8 cut(s) 5, 59, 83, 244, 510, 690, 718, 914
BccI CCATC 5 cut(s) 328, 421, 469, 665, 771
BcgI CGANNNNNNTGC 2 cut(s) 920, 954
BciT130I CCWGG 3 cut(s) 344, 988, 1022
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 303, 355, 972
BfaI CTAG 2 cut(s) 666, 1095
BfmI CTRYAG 3 cut(s) 19, 704, 885
BfoI RGCGCY 1 cut(s) 566
BmcAI AGTACT 3 cut(s) 485, 736, 958
Bme1390I CCNGG 4 cut(s) 231, 344, 988, 1022
Bme18I GGWCC 1 cut(s) 1033
BmeRI GACNNNNNGTC 1 cut(s) 727
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 280, 1033
BmiI GGNNCC 2 cut(s) 220, 459
BmrFI CCNGG 4 cut(s) 231, 344, 988, 1022
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 846, 1141
BpmI CTGGAG 2 cut(s) 326, 852
BpuEI CTTGAG 2 cut(s) 551, 871
BpuMI CCSGG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 67, 90, 987
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bse1I ACTGG 2 cut(s) 508, 732
Bse3DI GCAATG 1 cut(s) 981
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 3 cut(s) 344, 988, 1022
BseDI CCNNGG 3 cut(s) 67, 90, 987
BseGI GGATG 1 cut(s) 320
BseJI GATNNNNATC 1 cut(s) 238
BseMI GCAATG 1 cut(s) 981
BseNI ACTGG 2 cut(s) 508, 732
BseXI GCAGC 8 cut(s) 5, 59, 83, 244, 510, 690, 718, 914
BseYI CCCAGC 2 cut(s) 43, 526
Bsh1236I CGCG 1 cut(s) 430
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 3 cut(s) 281, 507, 1020
BsiEI CGRYCG 1 cut(s) 550
BsiHKAI GWGCWC 3 cut(s) 814, 1065, 1109
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 2 cut(s) 105, 231
BslFI GGGAC 1 cut(s) 912
BsmAI GTCTC 3 cut(s) 303, 355, 972
BsmFI GGGAC 1 cut(s) 912
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 3 cut(s) 281, 507, 1020
BsoBI CYCGRG 1 cut(s) 493
Bsp1286I GDGCHC 3 cut(s) 814, 1065, 1109
Bsp143I GATC 5 cut(s) 73, 233, 404, 478, 964
Bsp19I CCATGG 2 cut(s) 67, 90
BspACI CCGC 6 cut(s) 34, 148, 205, 400, 430, 710
BspANI GGCC 3 cut(s) 281, 507, 1020
BspFNI CGCG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 220, 459
BspMAI CTGCAG 2 cut(s) 23, 708
BspPI GGATC 3 cut(s) 68, 241, 972
BsrDI GCAATG 1 cut(s) 981
BsrI ACTGG 2 cut(s) 508, 732
BssECI CCNNGG 3 cut(s) 67, 90, 987
BssMI GATC 5 cut(s) 73, 233, 404, 478, 964
BssT1I CCWWGG 2 cut(s) 67, 90
Bst2UI CCWGG 3 cut(s) 344, 988, 1022
Bst4CI ACNGT 3 cut(s) 137, 631, 961
Bst6I CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 945
BstAPI GCANNNNNTGC 3 cut(s) 53, 114, 523
BstC8I GCNNGC 1 cut(s) 810
BstDSI CCRYGG 2 cut(s) 67, 90
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 430
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 3 cut(s) 430, 565, 595
BstKTI GATC 5 cut(s) 76, 236, 407, 481, 967
BstMAI GTCTC 3 cut(s) 303, 355, 972
BstMBI GATC 5 cut(s) 73, 233, 404, 478, 964
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 7 cut(s) 53, 105, 114, 523, 590, 709, 715
BstNI CCWGG 3 cut(s) 344, 988, 1022
BstNSI RCATGY 2 cut(s) 103, 1128
BstSCI CCNGG 4 cut(s) 229, 342, 986, 1020
BstSFI CTRYAG 3 cut(s) 19, 704, 885
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 8 cut(s) 5, 59, 83, 244, 510, 690, 718, 914
BstV2I GAAGAC 2 cut(s) 846, 1141
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 3 cut(s) 281, 507, 1020
BtgI CCRYGG 2 cut(s) 67, 90
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 810
CaiI CAGNNNCTG 2 cut(s) 53, 526
CfoI GCGC 3 cut(s) 430, 565, 595
Cfr13I GGNCC 2 cut(s) 280, 1033
Csp6I GTAC 4 cut(s) 138, 484, 735, 957
CviAII CATG 6 cut(s) 68, 91, 100, 354, 938, 1125
CviQI GTAC 4 cut(s) 138, 484, 735, 957
DpnI GATC 5 cut(s) 75, 235, 406, 480, 966
DpnII GATC 5 cut(s) 73, 233, 404, 478, 964
DriI GACNNNNNGTC 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 945
Eam1105I GACNNNNNGTC 1 cut(s) 727
EarI CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 945
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 2 cut(s) 67, 90
Eco147I AGGCCT 1 cut(s) 1020
Eco24I GRGCYC 1 cut(s) 1065
Eco47I GGWCC 1 cut(s) 1033
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 1 cut(s) 733
Eco88I CYCGRG 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 1063
EcoO109I RGGNCCY 1 cut(s) 1033
EcoRII CCWGG 3 cut(s) 342, 986, 1020
EcoT14I CCWWGG 2 cut(s) 67, 90
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 2 cut(s) 67, 90
FaeI CATG 6 cut(s) 71, 94, 103, 357, 941, 1128
FaiI YATR 9 cut(s) 69, 92, 101, 330, 355, 437, 869, 939, 1126
FaqI GGGAC 1 cut(s) 912
FatI CATG 6 cut(s) 67, 90, 99, 353, 937, 1124
FauI CCCGC 1 cut(s) 198
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 1065
FspBI CTAG 2 cut(s) 666, 1095
GlaI GCGC 3 cut(s) 429, 564, 594
GsaI CCCAGC 2 cut(s) 47, 530
GsuI CTGGAG 2 cut(s) 326, 852
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 3 cut(s) 281, 507, 1020
HapII CCGG 2 cut(s) 105, 231
HhaI GCGC 3 cut(s) 430, 565, 595
Hin1II CATG 6 cut(s) 71, 94, 103, 357, 941, 1128
Hin6I GCGC 3 cut(s) 428, 563, 593
HinP1I GCGC 3 cut(s) 428, 563, 593
HinfI GANTC 2 cut(s) 728, 1054
HpaII CCGG 2 cut(s) 105, 231
HphI GGTGA 3 cut(s) 56, 309, 1004
Hpy166II GTNNAC 1 cut(s) 882
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 188, 476, 929, 1058
Hpy8I GTNNAC 1 cut(s) 882
Hpy99I CGWCG 2 cut(s) 728, 1070
HpyAV CCTTC 3 cut(s) 553, 757, 870
HpyCH4III ACNGT 3 cut(s) 137, 631, 961
HpyCH4IV ACGT 1 cut(s) 893
HpyCH4V TGCA 5 cut(s) 21, 83, 99, 156, 706
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 105, 114, 523, 590, 709, 715
HpySE526I ACGT 1 cut(s) 893
Hsp92II CATG 6 cut(s) 71, 94, 103, 357, 941, 1128
HspAI GCGC 3 cut(s) 428, 563, 593
Kzo9I GATC 5 cut(s) 73, 233, 404, 478, 964
LmnI GCTCC 2 cut(s) 463, 530
Lsp1109I GCAGC 8 cut(s) 5, 59, 83, 244, 510, 690, 718, 914
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 666, 1095
MaeII ACGT 1 cut(s) 893
MaeIII GTNAC 1 cut(s) 315
MalI GATC 5 cut(s) 75, 235, 406, 480, 966
MboI GATC 5 cut(s) 73, 233, 404, 478, 964
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 814, 1065, 1109
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 6 cut(s) 142, 158, 293, 303, 651, 799
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 1 cut(s) 737
MmeI TCCRAC 1 cut(s) 423
Mox20I TGGCCA 1 cut(s) 507
MscI TGGCCA 1 cut(s) 507
MseI TTAA 4 cut(s) 296, 642, 654, 798
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 18, 523
MspI CCGG 2 cut(s) 105, 231
MspR9I CCNGG 4 cut(s) 231, 344, 988, 1022
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 3 cut(s) 344, 988, 1022
MvnI CGCG 1 cut(s) 430
MwoI GCNNNNNNNGC 7 cut(s) 53, 105, 114, 523, 590, 709, 715
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 2 cut(s) 67, 90
NdeII GATC 5 cut(s) 73, 233, 404, 478, 964
NlaIII CATG 6 cut(s) 71, 94, 103, 357, 941, 1128
NlaIV GGNNCC 2 cut(s) 220, 459
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 2 cut(s) 103, 1128
PaeR7I CTCGAG 1 cut(s) 493
PceI AGGCCT 1 cut(s) 1020
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 1054
PfoI TCCNGGA 1 cut(s) 229
PleI GAGTC 1 cut(s) 736
PpsI GAGTC 1 cut(s) 736
PpuMI RGGWCCY 1 cut(s) 1033
PshBI ATTAAT 2 cut(s) 642, 798
Psp124BI GAGCTC 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 1033
Psp6I CCWGG 3 cut(s) 342, 986, 1020
PspFI CCCAGC 2 cut(s) 43, 526
PspGI CCWGG 3 cut(s) 342, 986, 1020
PspN4I GGNNCC 2 cut(s) 220, 459
PspPI GGNCC 2 cut(s) 280, 1033
PspPPI RGGWCCY 1 cut(s) 1033
PspXI VCTCGAGB 1 cut(s) 493
PstI CTGCAG 2 cut(s) 23, 708
PstNI CAGNNNCTG 2 cut(s) 53, 526
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 18, 523
RsaI GTAC 4 cut(s) 139, 485, 736, 958
RsaNI GTAC 4 cut(s) 138, 484, 735, 957
SacI GAGCTC 1 cut(s) 1065
SaqAI TTAA 4 cut(s) 296, 642, 654, 798
Sau3AI GATC 5 cut(s) 73, 233, 404, 478, 964
Sau96I GGNCC 2 cut(s) 280, 1033
ScaI AGTACT 3 cut(s) 485, 736, 958
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 4 cut(s) 231, 344, 988, 1022
SduI GDGCHC 3 cut(s) 814, 1065, 1109
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 3 cut(s) 19, 704, 885
Sfr274I CTCGAG 1 cut(s) 493
SinI GGWCC 1 cut(s) 1033
SlaI CTCGAG 1 cut(s) 493
SmlI CTYRAG 3 cut(s) 493, 566, 850
SmoI CTYRAG 3 cut(s) 493, 566, 850
Sse9I AATT 6 cut(s) 142, 158, 293, 303, 651, 799
SseBI AGGCCT 1 cut(s) 1020
SsiI CCGC 6 cut(s) 34, 148, 205, 400, 430, 710
SspI AATATT 3 cut(s) 361, 796, 1091
SspMI CTAG 2 cut(s) 666, 1095
SstI GAGCTC 1 cut(s) 1065
StuI AGGCCT 1 cut(s) 1020
StyD4I CCNGG 4 cut(s) 229, 342, 986, 1020
StyI CCWWGG 2 cut(s) 67, 90
TaaI ACNGT 3 cut(s) 137, 631, 961
TaiI ACGT 1 cut(s) 896
TaqI TCGA 2 cut(s) 494, 948
TaqII GACCGA 1 cut(s) 564
TasI AATT 6 cut(s) 142, 158, 293, 303, 651, 799
TatI WGTACW 3 cut(s) 483, 734, 956
TauI GCSGC 3 cut(s) 403, 433, 712
TfiI GAWTC 1 cut(s) 1054
Tru1I TTAA 4 cut(s) 296, 642, 654, 798
Tru9I TTAA 4 cut(s) 296, 642, 654, 798
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 8 cut(s) 18, 47, 96, 257, 523, 703, 706, 902
Tsp45I GTSAC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 1033
VspI ATTAAT 2 cut(s) 642, 798
XapI RAATTY 1 cut(s) 158
XceI RCATGY 2 cut(s) 103, 1128
XhoI CTCGAG 1 cut(s) 493
XspI CTAG 2 cut(s) 666, 1095
ZrmI AGTACT 3 cut(s) 485, 736, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.