Rorug03G0269600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012262
Physical Location & Seq
Reverse (-)
26546487 .. 26547209
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0269600.1

Sequence Viewer

Length: 702 bp
ATGCCTGCATCCTTAGACAGGAATGAGGGCTATATTAAAGTTTTCCAAGAGCTCTTTCTTTCTAGTCACTATGATAACAATCTCTTTGCAAAAGTGATCATTTCCTGCTGGCAAATTTGGAAAGCCAGAAATGACAAAGTGTTTAGAAATGGAAACCCAAATCCACGCTCTGTGGTAGCAGCTTCTGCTGCATTACTCACCTCTTCTAAGGTTTTAACTGTTCATGCAGATGGAGTTCCTCAAAACCTCTCAACCACCATTAGGTGGAAACTCCCCTCTGTTGGTACAGTTAAACTAAATTTTGATGGATCTGTTAACGAATCCTCTGCTGCTGGCGGTTTTGTTGTACGTGATATTCATGACAGACCTCTTTGTAGCAAAAGAATTGCCGAAGCTCTGGCTCTTCGAGATGGTCTCCTTTGCGCCTTGGAACAAGGACACAATAGAATCGCGGTGGAAGGAGACTCAAAACTTGTCATCAAGGCTGTTAACAAAGTCATACAGCCACCCTGGCATTTGATCAAAATCATTCAAGACATTCAACCCATTGCCAACAGATTCGAAGTGATCTCCTTTAAGCATATTTTTAGGGAAGCAAACTTTGTGGCAGATACTTCAACAAATGTAGGTCTTAACCATCCCAATGGCTCCTCATGGACTAGTAGCATTCCCTTTGGAGGCCTTTCGAGCCTTACGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

233

Amino Acids

25.61

Weight (kDa)

9.37

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 100 - 206 3.2e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 1 cut(s) 452
AciI CCGC 2 cut(s) 336, 452
AclWI GGATC 1 cut(s) 316
AcsI RAATTY 2 cut(s) 114, 298
AfaI GTAC 2 cut(s) 286, 348
AfiI CCNNNNNNNGG 5 cut(s) 18, 261, 264, 281, 677
AgsI TTSAA 3 cut(s) 533, 542, 618
AhlI ACTAGT 1 cut(s) 659
AjnI CCWGG 1 cut(s) 509
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 3 cut(s) 52, 182, 395
AluI AGCT 3 cut(s) 52, 182, 395
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 419, 456
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 1 cut(s) 679
ApeKI GCWGC 3 cut(s) 179, 188, 329
ApoI RAATTY 2 cut(s) 114, 298
AspLEI GCGC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 561
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 3 cut(s) 175, 191, 316
BccI CCATC 4 cut(s) 224, 299, 404, 645
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 1 cut(s) 511
BclI TGATCA 2 cut(s) 96, 519
BcoDI GTCTC 2 cut(s) 419, 456
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 2 cut(s) 63, 660
BglI GCCNNNNNGGC 1 cut(s) 511
BisI GCNGC 3 cut(s) 180, 189, 330
BlsI GCNGC 3 cut(s) 181, 190, 331
Bme1390I CCNGG 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 399, 431
Bpu14I TTCGAA 1 cut(s) 561
BsaAI YACGTR 1 cut(s) 350
BsaBI GATNNNNATC 2 cut(s) 78, 524
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 426, 509
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 261, 264, 281, 677
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 2 cut(s) 78, 524
BseBI CCWGG 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 426, 509
BseGI GGATG 2 cut(s) 8, 637
BseJI GATNNNNATC 2 cut(s) 78, 524
BseLI CCNNNNNNNGG 5 cut(s) 18, 261, 264, 281, 677
BseMI GCAATG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 640
BseXI GCAGC 3 cut(s) 175, 191, 316
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 54
BslI CCNNNNNNNGG 5 cut(s) 18, 261, 264, 281, 677
BsmAI GTCTC 2 cut(s) 419, 456
BsmI GAATGC 1 cut(s) 666
BsnI GGCC 1 cut(s) 681
Bso31I GGTCTC 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 4 cut(s) 96, 308, 519, 567
BspACI CCGC 2 cut(s) 336, 452
BspANI GGCC 1 cut(s) 681
BspFNI CGCG 1 cut(s) 452
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 649
BspPI GGATC 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 561
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 546
BssECI CCNNGG 2 cut(s) 426, 509
BssMI GATC 4 cut(s) 96, 308, 519, 567
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 2 cut(s) 220, 289
Bst6I CTCTTC 2 cut(s) 208, 408
BstAPI GCANNNNNTGC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 561
BstC8I GCNNGC 3 cut(s) 6, 110, 334
BstDEI CTNAG 2 cut(s) 13, 207
BstENI CCTNNNNNAGG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 8, 637
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 4 cut(s) 99, 311, 522, 570
BstMAI GTCTC 2 cut(s) 419, 456
BstMBI GATC 4 cut(s) 96, 308, 519, 567
BstMWI GCNNNNNNNGC 4 cut(s) 185, 188, 511, 687
BstNI CCWGG 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 509
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 175, 191, 316
BstX2I RGATCY 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 644
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 1 cut(s) 681
BtsCI GGATG 2 cut(s) 8, 637
Cac8I GCNNGC 3 cut(s) 6, 110, 334
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 358
CfoI GCGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 285, 347
CspCI CAANNNNNGTGG 2 cut(s) 585, 620
CviAII CATG 3 cut(s) 224, 359, 654
CviQI GTAC 2 cut(s) 285, 347
DdeI CTNAG 2 cut(s) 13, 207
DpnI GATC 4 cut(s) 98, 310, 521, 569
DpnII GATC 4 cut(s) 96, 308, 519, 567
Eam1104I CTCTTC 2 cut(s) 208, 408
EarI CTCTTC 2 cut(s) 208, 408
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 681
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 419
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 3 cut(s) 227, 362, 657
FaiI YATR 7 cut(s) 33, 72, 225, 360, 500, 582, 655
FatI CATG 3 cut(s) 223, 358, 653
FbaI TGATCA 2 cut(s) 96, 519
Fnu4HI GCNGC 3 cut(s) 180, 189, 330
FokI GGATG 1 cut(s) 624
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 180, 189, 330
FspBI CTAG 2 cut(s) 63, 660
GlaI GCGC 1 cut(s) 424
GluI GCNGC 3 cut(s) 180, 189, 330
HaeIII GGCC 1 cut(s) 681
HhaI GCGC 1 cut(s) 425
Hin1II CATG 3 cut(s) 227, 362, 657
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HincII GTYRAC 2 cut(s) 316, 490
HindII GTYRAC 2 cut(s) 316, 490
HinfI GANTC 4 cut(s) 320, 447, 464, 558
HpaI GTTAAC 2 cut(s) 316, 490
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 316, 490
Hpy188III TCNNGA 3 cut(s) 359, 407, 533
Hpy8I GTNNAC 2 cut(s) 316, 490
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 2 cut(s) 220, 289
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 4 cut(s) 8, 89, 191, 227
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 188, 511, 687
HpyF3I CTNAG 2 cut(s) 13, 207
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 3 cut(s) 227, 362, 657
HspAI GCGC 1 cut(s) 423
Ksp22I TGATCA 2 cut(s) 96, 519
KspAI GTTAAC 2 cut(s) 316, 490
Kzo9I GATC 4 cut(s) 96, 308, 519, 567
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 653
LpnPI CCDG 9 cut(s) 4, 18, 94, 118, 139, 318, 383, 496, 523
Lsp1109I GCAGC 3 cut(s) 175, 191, 316
LweI GCATC 1 cut(s) 17
MaeI CTAG 2 cut(s) 63, 660
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 65
MalI GATC 4 cut(s) 98, 310, 521, 569
MboI GATC 4 cut(s) 96, 308, 519, 567
MboII GAAGA 2 cut(s) 195, 395
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 3 cut(s) 114, 298, 384
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 9 cut(s) 19, 211, 249, 257, 286, 334, 378, 661, 671
MseI TTAA 7 cut(s) 36, 215, 291, 315, 489, 576, 633
MslI CAYNNNNRTG 2 cut(s) 228, 642
MspR9I CCNGG 1 cut(s) 511
Mva1269I GAATGC 1 cut(s) 666
MvaI CCWGG 1 cut(s) 511
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 4 cut(s) 185, 188, 511, 687
NdeII GATC 4 cut(s) 96, 308, 519, 567
NlaIII CATG 3 cut(s) 227, 362, 657
NlaIV GGNNCC 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 65
NspV TTCGAA 1 cut(s) 561
PagI TCATGA 1 cut(s) 358
PceI AGGCCT 1 cut(s) 681
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 692
PctI GAATGC 1 cut(s) 666
PfeI GAWTC 3 cut(s) 320, 447, 558
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 3 cut(s) 181, 190, 331
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
Ppu21I YACGTR 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspN4I GGNNCC 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 2 cut(s) 286, 348
RsaNI GTAC 2 cut(s) 285, 347
RseI CAYNNNNRTG 2 cut(s) 228, 642
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 7 cut(s) 36, 215, 291, 315, 489, 576, 633
SatI GCNGC 3 cut(s) 180, 189, 330
Sau3AI GATC 4 cut(s) 96, 308, 519, 567
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 511
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 1 cut(s) 17
SfuI TTCGAA 1 cut(s) 561
SmiMI CAYNNNNRTG 2 cut(s) 228, 642
SpeI ACTAGT 1 cut(s) 659
Sse9I AATT 3 cut(s) 114, 298, 384
SseBI AGGCCT 1 cut(s) 681
SsiI CCGC 2 cut(s) 336, 452
SspMI CTAG 2 cut(s) 63, 660
SstI GAGCTC 1 cut(s) 54
StuI AGGCCT 1 cut(s) 681
StyD4I CCNGG 1 cut(s) 509
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 220, 289
TaiI ACGT 1 cut(s) 352
TaqI TCGA 3 cut(s) 406, 561, 686
TasI AATT 3 cut(s) 114, 298, 384
TfiI GAWTC 3 cut(s) 320, 447, 558
Tru1I TTAA 7 cut(s) 36, 215, 291, 315, 489, 576, 633
Tru9I TTAA 7 cut(s) 36, 215, 291, 315, 489, 576, 633
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 3 cut(s) 179, 188, 329
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 212, 347
Van91I CCANNNNNTGG 1 cut(s) 264
XagI CCTNNNNNAGG 1 cut(s) 16
XapI RAATTY 2 cut(s) 114, 298
XspI CTAG 2 cut(s) 63, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.