Rh3CG351400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0012262
Physical Location & Seq
Reverse (-)
42375068 .. 42377525
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG351400.1

Sequence Viewer

Length: 1170 bp
ATGAGACGACAGGACAGCTGCAGTAGTGATTTGCGGTTAGACCCAGCAGCATCTGCCTCTGCTCACCATGGAGATCCGAATGCAAAGACCATGGGCTGCATGTCCGGCATTATTTGCTTTCTCTCCAAATACCACCGTACTAATTTCCGCAAATGCAAATTCCTCACATTTGGATGTTCATCAGGGAAAACGCAAAATCAAGAGAAGAATAATGGGCGGGTTGGTAATGGTTCCTCTTCTCCCGGATCGTCATCAACAACAATCCAAGCTGCTTCCACTAACAGAATAGTGGCCCAACTAACAGAATTAAACAAAATTGGAGACAAGTCACCATCCTCGCATATTAGTTATCTCCAGGCAGTCTCATGTAATATTGTGCCAAGAAGCCCGACACTTCCAGCAGATATTCGGCGGCGATCGGCACCATCGCTGGTAATAGCGCGGCTTATGGGGTTGGAAGAGGAAGAGGCTCCATCAATACAAGTTCAAGATCAGTACTACTACTCGAGGATAACTGGCCAGAAGAGGCAACAGCTGCTGGGAGCATTGGAAAAATGCGACCGAGATTTGAAGGCGCTCAAGCAGATGATAGAAGCTGTTGGTGCGCCACCGAAAAAATCAATGGAGGCGATTGACAATACTGTTGTTGTTATTAATAAGGGAATTAAGAAGAGGTCTAGTGATGGTGCTATTTTGAAGAAGAGTAGTAGTGAGCTGCAGCCGAGTTGTGTTTCTGTGCTTGACGACGAGTCCAGTACTCGTTCTCCCTTCAGCAACCCCCACCACCACTACTCCAAGAAACAAATATCGTTCAATATTAATTACGGGCGAGCACAACAAAGGAAGATAGCTGGAGAAGAAGACTACTACTTGAGTAATCCTCCAAGTATAAATAACAAGTTCACTACAGAATCGTCAGTAGCAGCATTTGGTGAGAACAAGACCCGTCCTGACTTCCATGCTATTGTCGAAGAGAGTACTGTGGATCAAGTGTGTAGAGACATTGCCTGGGGTGAGAAAAGAGAAATGGGAAGAATAGGCTTGGCTTTACAGGACCTTATCTACAAAAACTTGATTCAAGAGCTCGTCGCTGAAATGGATTATTCAAAATATTCTAGTCCTGTGTGCTCACTACCCTTTGAGGCATGTAAGAGAAGACTATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

389

Amino Acids

43.04

Weight (kDa)

9.12

Isoelectric Point (pI)

68.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AccII CGCG 1 cut(s) 442
AciI CCGC 5 cut(s) 34, 148, 217, 412, 442
AclWI GGATC 3 cut(s) 68, 253, 993
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 754
AfaI GTAC 4 cut(s) 139, 497, 757, 979
AgsI TTSAA 6 cut(s) 488, 571, 697, 814, 1079, 1107
AhdI GACNNNNNGTC 1 cut(s) 748
AjnI CCWGG 2 cut(s) 354, 1007
AluBI AGCT 7 cut(s) 18, 269, 535, 596, 715, 851, 1084
AluI AGCT 7 cut(s) 18, 269, 535, 596, 715, 851, 1084
Alw21I GWGCWC 3 cut(s) 835, 1086, 1130
Alw26I GTCTC 3 cut(s) 315, 367, 993
AlwI GGATC 3 cut(s) 68, 253, 993
AlwNI CAGNNNCTG 2 cut(s) 53, 538
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 2 cut(s) 291, 517
ApeKI GCWGC 8 cut(s) 18, 47, 96, 269, 535, 715, 718, 923
ApoI RAATTY 1 cut(s) 158
AseI ATTAAT 2 cut(s) 654, 819
AspLEI GCGC 3 cut(s) 442, 577, 607
AspS9I GGNCC 2 cut(s) 292, 1054
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 4 cut(s) 56, 321, 944, 1025
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 1 cut(s) 1054
BalI TGGCCA 1 cut(s) 519
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 1086
BbsI GAAGAC 2 cut(s) 867, 1162
Bbv12I GWGCWC 3 cut(s) 835, 1086, 1130
BbvI GCAGC 8 cut(s) 5, 59, 83, 256, 522, 702, 730, 935
BccI CCATC 4 cut(s) 340, 433, 481, 677
BciT130I CCWGG 2 cut(s) 356, 1009
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 3 cut(s) 315, 367, 993
BfaI CTAG 2 cut(s) 678, 1116
BfmI CTRYAG 3 cut(s) 19, 716, 906
BfoI RGCGCY 1 cut(s) 578
BmcAI AGTACT 3 cut(s) 497, 757, 979
Bme1390I CCNGG 3 cut(s) 243, 356, 1009
Bme18I GGWCC 1 cut(s) 1054
BmeRI GACNNNNNGTC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 2 cut(s) 292, 1054
BmiI GGNNCC 3 cut(s) 232, 423, 471
BmrFI CCNGG 3 cut(s) 243, 356, 1009
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 867, 1162
BplI GAGNNNNNCTC 2 cut(s) 865, 897
BpmI CTGGAG 2 cut(s) 338, 873
BpuEI CTTGAG 2 cut(s) 563, 892
BpuMI CCSGG 1 cut(s) 243
BsaBI GATNNNNATC 2 cut(s) 178, 250
BsaJI CCNNGG 3 cut(s) 67, 90, 1008
BsaXI ACNNNNNCTCC 4 cut(s) 748, 776, 778, 806
Bse1I ACTGG 2 cut(s) 520, 753
Bse3DI GCAATG 1 cut(s) 1002
Bse8I GATNNNNATC 2 cut(s) 178, 250
BseBI CCWGG 2 cut(s) 356, 1009
BseDI CCNNGG 3 cut(s) 67, 90, 1008
BseGI GGATG 2 cut(s) 179, 332
BseJI GATNNNNATC 2 cut(s) 178, 250
BseMI GCAATG 1 cut(s) 1002
BseNI ACTGG 2 cut(s) 520, 753
BseXI GCAGC 8 cut(s) 5, 59, 83, 256, 522, 702, 730, 935
BseYI CCCAGC 2 cut(s) 43, 538
Bsh1236I CGCG 1 cut(s) 442
Bsh1285I CGRYCG 2 cut(s) 419, 562
BshFI GGCC 2 cut(s) 293, 519
BshNI GGYRCC 1 cut(s) 421
BsiEI CGRYCG 2 cut(s) 419, 562
BsiHKAI GWGCWC 3 cut(s) 835, 1086, 1130
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 2 cut(s) 105, 243
BsmAI GTCTC 3 cut(s) 315, 367, 993
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 2 cut(s) 293, 519
BsoBI CYCGRG 1 cut(s) 505
Bsp1286I GDGCHC 3 cut(s) 835, 1086, 1130
Bsp143I GATC 5 cut(s) 73, 245, 416, 490, 985
Bsp19I CCATGG 2 cut(s) 67, 90
BspACI CCGC 5 cut(s) 34, 148, 217, 412, 442
BspANI GGCC 2 cut(s) 293, 519
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 232, 423, 471
BspMAI CTGCAG 2 cut(s) 23, 720
BspPI GGATC 3 cut(s) 68, 253, 993
BspT107I GGYRCC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 1002
BsrI ACTGG 2 cut(s) 520, 753
BssECI CCNNGG 3 cut(s) 67, 90, 1008
BssMI GATC 5 cut(s) 73, 245, 416, 490, 985
BssT1I CCWWGG 2 cut(s) 67, 90
Bst2UI CCWGG 2 cut(s) 356, 1009
Bst4CI ACNGT 3 cut(s) 137, 643, 982
Bst6I CTCTTC 7 cut(s) 241, 453, 459, 518, 665, 695, 966
BstAPI GCANNNNNTGC 3 cut(s) 53, 114, 535
BstC8I GCNNGC 1 cut(s) 831
BstDSI CCRYGG 2 cut(s) 67, 90
BstF5I GGATG 2 cut(s) 179, 332
BstFNI CGCG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 3 cut(s) 442, 577, 607
BstKTI GATC 5 cut(s) 76, 248, 419, 493, 988
BstMAI GTCTC 3 cut(s) 315, 367, 993
BstMBI GATC 5 cut(s) 73, 245, 416, 490, 985
BstMCI CGRYCG 2 cut(s) 419, 562
BstMWI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 535, 602
BstNI CCWGG 2 cut(s) 356, 1009
BstNSI RCATGY 2 cut(s) 103, 1149
BstSCI CCNGG 3 cut(s) 241, 354, 1007
BstSFI CTRYAG 3 cut(s) 19, 716, 906
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 8 cut(s) 5, 59, 83, 256, 522, 702, 730, 935
BstV2I GAAGAC 2 cut(s) 867, 1162
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 293, 519
BtgI CCRYGG 2 cut(s) 67, 90
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 179, 332
Cac8I GCNNGC 1 cut(s) 831
CaiI CAGNNNCTG 2 cut(s) 53, 538
CfoI GCGC 3 cut(s) 442, 577, 607
Cfr13I GGNCC 2 cut(s) 292, 1054
Csp6I GTAC 4 cut(s) 138, 496, 756, 978
CviAII CATG 6 cut(s) 68, 91, 100, 366, 959, 1146
CviQI GTAC 4 cut(s) 138, 496, 756, 978
DpnI GATC 5 cut(s) 75, 247, 418, 492, 987
DpnII GATC 5 cut(s) 73, 245, 416, 490, 985
DriI GACNNNNNGTC 1 cut(s) 748
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 7 cut(s) 241, 453, 459, 518, 665, 695, 966
Eam1105I GACNNNNNGTC 1 cut(s) 748
EarI CTCTTC 7 cut(s) 241, 453, 459, 518, 665, 695, 966
Ecl136II GAGCTC 1 cut(s) 1084
Eco130I CCWWGG 2 cut(s) 67, 90
Eco24I GRGCYC 1 cut(s) 1086
Eco47I GGWCC 1 cut(s) 1054
Eco53kI GAGCTC 1 cut(s) 1084
Eco57I CTGAAG 1 cut(s) 754
Eco88I CYCGRG 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 1084
EcoO109I RGGNCCY 1 cut(s) 1054
EcoRII CCWGG 2 cut(s) 354, 1007
EcoT14I CCWWGG 2 cut(s) 67, 90
EcoT38I GRGCYC 1 cut(s) 1086
ErhI CCWWGG 2 cut(s) 67, 90
FaeI CATG 6 cut(s) 71, 94, 103, 369, 962, 1149
FaiI YATR 9 cut(s) 69, 92, 101, 342, 367, 449, 890, 960, 1147
FatI CATG 6 cut(s) 67, 90, 99, 365, 958, 1145
FauI CCCGC 1 cut(s) 210
FokI GGATG 2 cut(s) 186, 319
FriOI GRGCYC 1 cut(s) 1086
FspBI CTAG 2 cut(s) 678, 1116
GlaI GCGC 3 cut(s) 441, 576, 606
GsaI CCCAGC 2 cut(s) 47, 542
GsuI CTGGAG 2 cut(s) 338, 873
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 2 cut(s) 293, 519
HapII CCGG 2 cut(s) 105, 243
HhaI GCGC 3 cut(s) 442, 577, 607
Hin1II CATG 6 cut(s) 71, 94, 103, 369, 962, 1149
Hin6I GCGC 3 cut(s) 440, 575, 605
HinP1I GCGC 3 cut(s) 440, 575, 605
HinfI GANTC 3 cut(s) 749, 911, 1075
HpaII CCGG 2 cut(s) 105, 243
HphI GGTGA 4 cut(s) 56, 321, 944, 1025
Hpy166II GTNNAC 1 cut(s) 903
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 200, 488, 950, 1079
Hpy8I GTNNAC 1 cut(s) 903
Hpy99I CGWCG 2 cut(s) 749, 1091
HpyAV CCTTC 2 cut(s) 565, 778
HpyCH4III ACNGT 3 cut(s) 137, 643, 982
HpyCH4V TGCA 5 cut(s) 21, 83, 99, 156, 718
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 535, 602
Hsp92II CATG 6 cut(s) 71, 94, 103, 369, 962, 1149
HspAI GCGC 3 cut(s) 440, 575, 605
Kzo9I GATC 5 cut(s) 73, 245, 416, 490, 985
LmnI GCTCC 2 cut(s) 475, 542
Lsp1109I GCAGC 8 cut(s) 5, 59, 83, 256, 522, 702, 730, 935
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 678, 1116
MaeIII GTNAC 1 cut(s) 327
MalI GATC 5 cut(s) 75, 247, 418, 492, 987
MboI GATC 5 cut(s) 73, 245, 416, 490, 985
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 835, 1086, 1130
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 6 cut(s) 142, 158, 305, 315, 663, 820
MluNI TGGCCA 1 cut(s) 519
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 1 cut(s) 435
Mox20I TGGCCA 1 cut(s) 519
MscI TGGCCA 1 cut(s) 519
MseI TTAA 4 cut(s) 308, 654, 666, 819
MslI CAYNNNNRTG 1 cut(s) 172
Msp20I TGGCCA 1 cut(s) 519
MspA1I CMGCKG 2 cut(s) 18, 535
MspI CCGG 2 cut(s) 105, 243
MspR9I CCNGG 3 cut(s) 243, 356, 1009
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 2 cut(s) 356, 1009
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 535, 602
NciI CCSGG 1 cut(s) 243
NcoI CCATGG 2 cut(s) 67, 90
NdeII GATC 5 cut(s) 73, 245, 416, 490, 985
NlaIII CATG 6 cut(s) 71, 94, 103, 369, 962, 1149
NlaIV GGNNCC 3 cut(s) 232, 423, 471
NmeAIII GCCGAG 1 cut(s) 747
NmuCI GTSAC 1 cut(s) 327
NspI RCATGY 2 cut(s) 103, 1149
PaeR7I CTCGAG 1 cut(s) 505
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 911, 1075
PfoI TCCNGGA 1 cut(s) 241
Ple19I CGATCG 1 cut(s) 419
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PpuMI RGGWCCY 1 cut(s) 1054
PshBI ATTAAT 2 cut(s) 654, 819
Psp124BI GAGCTC 1 cut(s) 1086
Psp5II RGGWCCY 1 cut(s) 1054
Psp6I CCWGG 2 cut(s) 354, 1007
PspFI CCCAGC 2 cut(s) 43, 538
PspGI CCWGG 2 cut(s) 354, 1007
PspN4I GGNNCC 3 cut(s) 232, 423, 471
PspPI GGNCC 2 cut(s) 292, 1054
PspPPI RGGWCCY 1 cut(s) 1054
PspXI VCTCGAGB 1 cut(s) 505
PstI CTGCAG 2 cut(s) 23, 720
PstNI CAGNNNCTG 2 cut(s) 53, 538
PsuI RGATCY 1 cut(s) 73
PvuI CGATCG 1 cut(s) 419
PvuII CAGCTG 2 cut(s) 18, 535
RsaI GTAC 4 cut(s) 139, 497, 757, 979
RsaNI GTAC 4 cut(s) 138, 496, 756, 978
RseI CAYNNNNRTG 1 cut(s) 172
SacI GAGCTC 1 cut(s) 1086
SaqAI TTAA 4 cut(s) 308, 654, 666, 819
Sau3AI GATC 5 cut(s) 73, 245, 416, 490, 985
Sau96I GGNCC 2 cut(s) 292, 1054
ScaI AGTACT 3 cut(s) 497, 757, 979
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 3 cut(s) 243, 356, 1009
SduI GDGCHC 3 cut(s) 835, 1086, 1130
SetI ASST 9 cut(s) 20, 271, 537, 598, 677, 717, 853, 1059, 1086
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 3 cut(s) 19, 716, 906
Sfr274I CTCGAG 1 cut(s) 505
SinI GGWCC 1 cut(s) 1054
SlaI CTCGAG 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 172
SmlI CTYRAG 3 cut(s) 505, 578, 871
SmoI CTYRAG 3 cut(s) 505, 578, 871
Sse9I AATT 6 cut(s) 142, 158, 305, 315, 663, 820
SsiI CCGC 5 cut(s) 34, 148, 217, 412, 442
SspI AATATT 3 cut(s) 373, 817, 1112
SspMI CTAG 2 cut(s) 678, 1116
SstI GAGCTC 1 cut(s) 1086
StyD4I CCNGG 3 cut(s) 241, 354, 1007
StyI CCWWGG 2 cut(s) 67, 90
TaaI ACNGT 3 cut(s) 137, 643, 982
TaqI TCGA 2 cut(s) 506, 969
TaqII GACCGA 1 cut(s) 576
TasI AATT 6 cut(s) 142, 158, 305, 315, 663, 820
TatI WGTACW 3 cut(s) 495, 755, 977
TauI GCSGC 2 cut(s) 415, 445
TfiI GAWTC 2 cut(s) 911, 1075
Tru1I TTAA 4 cut(s) 308, 654, 666, 819
Tru9I TTAA 4 cut(s) 308, 654, 666, 819
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 8 cut(s) 18, 47, 96, 269, 535, 715, 718, 923
Tsp45I GTSAC 1 cut(s) 327
TspDTI ATGAA 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 1054
VspI ATTAAT 2 cut(s) 654, 819
XapI RAATTY 1 cut(s) 158
XceI RCATGY 2 cut(s) 103, 1149
XhoI CTCGAG 1 cut(s) 505
XspI CTAG 2 cut(s) 678, 1116
ZrmI AGTACT 3 cut(s) 497, 757, 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.