FvH4_1g29470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012262
Physical Location & Seq
Reverse (-)
22605989 .. 22606561
573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29470.t1

Sequence Viewer

Length: 573 bp
ATGCTCACAGGGAAAAAGCAAAATCAAGAGAAGAATAATGGGCAGGTTGGTAATGTTTCCTCTTCTCTAGGATCATTATCGACAACAATCCAAGCTGCTTCCACTAGCAGAATGATGGCCAAACTAGCAGAACTAAACGAAATTGGAGACAAGTCACCATCCTCGCGTGTAAGTTATCTCCAGGCAGTCTCATGTAATGTTGTGCCAAGAAGCCCTACACTTGCAGCAGAGATTCGGCGGCGATCGGCAGCACCACCGCTGGTAATAGCACGGCTTATGGAGTTGGAAGAGGTCGAGGCTCCATCAAAAGATGGGAAAGATCAGTACTACTACTCGAGGATAAGCAGCCAGAAAAGGCAACAACTGCTGGGAGCATTGGACAAATGCGACCGAGATTTGAAGGCGCTCAAGAGGATGATAGAAGCTATTAGTGCGCCTCCGAAAAGATCAATGGAGGCAATTGACAATACTATTGTTCATATTAATAATGAGATTAAGAAGAGGTCATGTGGTGGTTCCATTTTGAAGAAGAGAAGTGGTCATGAGCTGCTGCCGAGTTGTGTTTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

191

Amino Acids

20.74

Weight (kDa)

9.69

Isoelectric Point (pI)

74.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 34
AccII CGCG 1 cut(s) 166
AciI CCGC 2 cut(s) 238, 257
AclWI GGATC 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 117
AfaI GTAC 1 cut(s) 326
AgsI TTSAA 2 cut(s) 400, 526
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 3 cut(s) 95, 425, 547
AluI AGCT 3 cut(s) 95, 425, 547
Alw26I GTCTC 2 cut(s) 141, 193
AlwI GGATC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 6 cut(s) 95, 224, 248, 345, 547, 550
AseI ATTAAT 1 cut(s) 483
AspLEI GCGC 2 cut(s) 406, 436
AsuHPI GGTGA 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 334
BalI TGGCCA 1 cut(s) 119
BbvI GCAGC 6 cut(s) 82, 236, 260, 357, 534, 537
BccI CCATC 4 cut(s) 109, 166, 305, 310
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 141, 193
BfaI CTAG 3 cut(s) 68, 105, 125
BfoI RGCGCY 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 34
BisI GCNGC 7 cut(s) 96, 225, 239, 249, 346, 548, 551
BlsI GCNGC 7 cut(s) 97, 226, 240, 250, 347, 549, 552
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 334
BmiI GGNNCC 2 cut(s) 300, 517
BmrFI CCNGG 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 76
BseBI CCWGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 158, 420
BseJI GATNNNNATC 1 cut(s) 76
BseXI GCAGC 6 cut(s) 82, 236, 260, 357, 534, 537
BseYI CCCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 166
Bsh1285I CGRYCG 2 cut(s) 245, 391
BshFI GGCC 1 cut(s) 119
BsiEI CGRYCG 2 cut(s) 245, 391
BsiHKCI CYCGRG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 141, 193
BsnI GGCC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 334
Bsp143I GATC 4 cut(s) 71, 242, 319, 446
BspACI CCGC 2 cut(s) 238, 257
BspANI GGCC 1 cut(s) 119
BspFNI CGCG 1 cut(s) 166
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 300, 517
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 1 cut(s) 79
BssMI GATC 4 cut(s) 71, 242, 319, 446
Bst2UI CCWGG 1 cut(s) 182
Bst6I CTCTTC 4 cut(s) 67, 282, 494, 524
BstAPI GCANNNNNTGC 1 cut(s) 364
BstF5I GGATG 2 cut(s) 158, 420
BstFNI CGCG 1 cut(s) 166
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 2 cut(s) 406, 436
BstKTI GATC 4 cut(s) 74, 245, 322, 449
BstMAI GTCTC 2 cut(s) 141, 193
BstMBI GATC 4 cut(s) 71, 242, 319, 446
BstMCI CGRYCG 2 cut(s) 245, 391
BstMWI GCNNNNNNNGC 3 cut(s) 125, 364, 431
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 6 cut(s) 82, 236, 260, 357, 534, 537
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 2 cut(s) 158, 420
BveI ACCTGC 1 cut(s) 34
CciI TCATGA 1 cut(s) 541
CfoI GCGC 2 cut(s) 406, 436
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 192, 507, 542
CviJI RGCY 8 cut(s) 95, 119, 213, 274, 299, 348, 425, 547
CviKI_1 RGCY 8 cut(s) 95, 119, 213, 274, 299, 348, 425, 547
CviQI GTAC 1 cut(s) 325
DpnI GATC 4 cut(s) 73, 244, 321, 448
DpnII GATC 4 cut(s) 71, 242, 319, 446
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 4 cut(s) 67, 282, 494, 524
EarI CTCTTC 4 cut(s) 67, 282, 494, 524
Eco88I CYCGRG 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 180
FaeI CATG 3 cut(s) 195, 510, 545
FaiI YATR 5 cut(s) 193, 278, 480, 508, 543
FatI CATG 3 cut(s) 191, 506, 541
Fnu4HI GCNGC 7 cut(s) 96, 225, 239, 249, 346, 548, 551
FokI GGATG 2 cut(s) 145, 427
Fsp4HI GCNGC 7 cut(s) 96, 225, 239, 249, 346, 548, 551
FspBI CTAG 3 cut(s) 68, 105, 125
GlaI GCGC 2 cut(s) 405, 435
GluI GCNGC 7 cut(s) 96, 225, 239, 249, 346, 548, 551
GsaI CCCAGC 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 1 cut(s) 119
HhaI GCGC 2 cut(s) 406, 436
Hin1II CATG 3 cut(s) 195, 510, 545
Hin6I GCGC 2 cut(s) 404, 434
HinP1I GCGC 2 cut(s) 404, 434
HinfI GANTC 1 cut(s) 232
HphI GGTGA 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 3 cut(s) 26, 409, 542
HpyAV CCTTC 1 cut(s) 394
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 364, 431
Hsp92II CATG 3 cut(s) 195, 510, 545
HspAI GCGC 2 cut(s) 404, 434
Kzo9I GATC 4 cut(s) 71, 242, 319, 446
LmnI GCTCC 2 cut(s) 304, 371
LpnPI CCDG 6 cut(s) 29, 167, 194, 245, 353, 362
Lsp1109I GCAGC 6 cut(s) 82, 236, 260, 357, 534, 537
MaeI CTAG 3 cut(s) 68, 105, 125
MaeIII GTNAC 1 cut(s) 153
MalI GATC 4 cut(s) 73, 244, 321, 448
MboI GATC 4 cut(s) 71, 242, 319, 446
MboII GAAGA 6 cut(s) 43, 54, 299, 511, 538, 541
MfeI CAATTG 1 cut(s) 459
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 2 cut(s) 141, 459
MluNI TGGCCA 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 9 cut(s) 70, 172, 283, 289, 330, 405, 447, 448, 495
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 2 cut(s) 483, 495
Msp20I TGGCCA 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 3 cut(s) 125, 364, 431
NdeII GATC 4 cut(s) 71, 242, 319, 446
NlaIII CATG 3 cut(s) 195, 510, 545
NlaIV GGNNCC 2 cut(s) 300, 517
NmuCI GTSAC 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 334
PagI TCATGA 1 cut(s) 541
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 7 cut(s) 97, 226, 240, 250, 347, 549, 552
Ple19I CGATCG 1 cut(s) 245
PshBI ATTAAT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 300, 517
PspXI VCTCGAGB 1 cut(s) 334
PvuI CGATCG 1 cut(s) 245
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 2 cut(s) 483, 495
SatI GCNGC 7 cut(s) 96, 225, 239, 249, 346, 548, 551
Sau3AI GATC 4 cut(s) 71, 242, 319, 446
ScaI AGTACT 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 182
SetI ASST 6 cut(s) 48, 97, 294, 427, 506, 549
Sfr274I CTCGAG 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 334, 407
SmoI CTYRAG 2 cut(s) 334, 407
Sse9I AATT 2 cut(s) 141, 459
SsiI CCGC 2 cut(s) 238, 257
SspMI CTAG 3 cut(s) 68, 105, 125
StyD4I CCNGG 1 cut(s) 180
TaqI TCGA 3 cut(s) 80, 294, 335
TaqII GACCGA 1 cut(s) 405
TasI AATT 2 cut(s) 141, 459
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 2 cut(s) 483, 495
Tru9I TTAA 2 cut(s) 483, 495
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 6 cut(s) 95, 224, 248, 345, 547, 550
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 467
VspI ATTAAT 1 cut(s) 483
XhoI CTCGAG 1 cut(s) 334
XspI CTAG 3 cut(s) 68, 105, 125
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.