RLG00000022648

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012262
Physical Location & Seq
Forward (+)
6373037 .. 6375139
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022648

Sequence Viewer

Length: 1155 bp
ATGAGACGACAGGACAGCTGCAGTAGTGATATGCGGATAGACCCAGCAGCATCTGCCTCTGCTCACCATGGAGATCCGAATGCAAAGGCCATGGGCTGCATGTCCGGCATTATTTGCTTTCTCTCCAAATACCACCGTACTAATTTCCGCAAATGCAAATTCCTCACATTTGGGAAAACGCAAAATCAAGAGAAGAATAATGGGCGGGTTGGTAATGGTTCCTCTTCTCCGGGATCGTCATCAACAACAATCCAAGCTACTTCCACTAACAGAATAGTGGCCCAACTAACAGAATTAAACAAAATTGGAGACAAGTCACCATCCCCGCATATTAGTTATCTCCAGGCAGTCTCATGTAATATTGTGCCAAGAAGCCCTACACTTCCTGCAGAGATTCGGCGGCGATCAGCACCATCGCTGGTAATAGCGCGGCTTATGGGGTTGGAAGAGGAAGAGGCTCCATCAATACAAGTTCAAGATCAGTACTACTACTCGAGGATAACTGGCCAGAAGAGGCAACAGCTGCTGGGAGCATTGGAAAAATGCGACCGAGATTTGAAGGCGCTCAAGCAGATGATAGAAGCTGTTGGTGCGCCACCGAAAAAATCAATGGAGGCGATTGACAATACTGTTGTTGTTATTAATAAGGGAATTAAGAAGAGGTCTAGTGGTAGTGCTATTTTGAAGAAGAGTAGTAGTGAGCTGCAGCCGAGTTGTGTTTCTGTGCTTGATGACGAGTCCAGTACTCGTTCTCCCTTCAGCAACCCCCACCACCACTACTCCAAAAAACAAATATCGTTTAACATTAATTACGGGCGAGCACAACAAAGGAAGATAGGTGGAGAAGAATACTACTTGAGTAATCCTCCAAGTATAATTAACAAGTTCACTACAGAATCGTCAGTAGCAGCATTTGATGAGAACAAGACCCGTCCTGACTGCCATGTTATTGTGGAAGAGAGTACTGTGGATCAAGTGTGTAGAGACATTGCATGGGGTGAGAAAAGAGAAATGGGAAGAATAGGCTTGGCTTTACAGGACCTTATCTACAAAAACTTGATTCAAGAGCTCGTCGCTGATATGGATTATTCAAAAAATACTAGTCCTGTGTGCTCACTACCTTTTGAGGCATGTAAGAGAAGACTATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

385

Amino Acids

42.59

Weight (kDa)

9.19

Isoelectric Point (pI)

69.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 430
AciI CCGC 6 cut(s) 34, 148, 205, 326, 400, 430
AclWI GGATC 3 cut(s) 68, 241, 978
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 742
AfaI GTAC 4 cut(s) 139, 485, 745, 964
AgsI TTSAA 5 cut(s) 476, 559, 685, 1064, 1092
AhlI ACTAGT 1 cut(s) 1100
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 6 cut(s) 18, 257, 523, 584, 703, 1069
AluI AGCT 6 cut(s) 18, 257, 523, 584, 703, 1069
Alw21I GWGCWC 3 cut(s) 823, 1071, 1115
Alw26I GTCTC 3 cut(s) 303, 355, 978
AlwI GGATC 3 cut(s) 68, 241, 978
AlwNI CAGNNNCTG 2 cut(s) 53, 526
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 3 cut(s) 87, 279, 505
ApeKI GCWGC 7 cut(s) 18, 47, 96, 523, 703, 706, 908
ApoI RAATTY 1 cut(s) 158
AseI ATTAAT 2 cut(s) 642, 807
AspLEI GCGC 3 cut(s) 430, 565, 595
AspS9I GGNCC 2 cut(s) 280, 1039
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 3 cut(s) 56, 309, 1010
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 1 cut(s) 1039
BalI TGGCCA 1 cut(s) 507
BanII GRGCYC 1 cut(s) 1071
BbsI GAAGAC 1 cut(s) 1147
Bbv12I GWGCWC 3 cut(s) 823, 1071, 1115
BbvI GCAGC 7 cut(s) 5, 59, 83, 510, 690, 718, 920
BccI CCATC 3 cut(s) 328, 421, 469
BciT130I CCWGG 1 cut(s) 344
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 303, 355, 978
BcuI ACTAGT 1 cut(s) 1100
BfaI CTAG 2 cut(s) 666, 1101
BfmI CTRYAG 4 cut(s) 19, 387, 704, 891
BfoI RGCGCY 1 cut(s) 566
BisI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 909
BlsI GCNGC 9 cut(s) 20, 49, 98, 402, 432, 525, 705, 708, 910
BmcAI AGTACT 3 cut(s) 485, 745, 964
Bme1390I CCNGG 2 cut(s) 231, 344
Bme18I GGWCC 1 cut(s) 1039
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 280, 1039
BmiI GGNNCC 2 cut(s) 220, 459
BmrFI CCNGG 2 cut(s) 231, 344
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 1147
BplI GAGNNNNNCTC 2 cut(s) 850, 882
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 2 cut(s) 551, 877
BpuMI CCSGG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 67, 90
BsaXI ACNNNNNCTCC 4 cut(s) 736, 764, 766, 794
Bse1I ACTGG 2 cut(s) 508, 741
Bse3DI GCAATG 1 cut(s) 987
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 67, 90
BseGI GGATG 1 cut(s) 320
BseJI GATNNNNATC 1 cut(s) 238
BseMI GCAATG 1 cut(s) 987
BseNI ACTGG 2 cut(s) 508, 741
BseXI GCAGC 7 cut(s) 5, 59, 83, 510, 690, 718, 920
BseYI CCCAGC 2 cut(s) 43, 526
Bsh1236I CGCG 1 cut(s) 430
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 3 cut(s) 89, 281, 507
BsiEI CGRYCG 1 cut(s) 550
BsiHKAI GWGCWC 3 cut(s) 823, 1071, 1115
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 2 cut(s) 105, 230
BsmAI GTCTC 3 cut(s) 303, 355, 978
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 3 cut(s) 89, 281, 507
BsoBI CYCGRG 1 cut(s) 493
Bsp1286I GDGCHC 3 cut(s) 823, 1071, 1115
Bsp143I GATC 5 cut(s) 73, 233, 404, 478, 970
Bsp19I CCATGG 2 cut(s) 67, 90
BspACI CCGC 6 cut(s) 34, 148, 205, 326, 400, 430
BspANI GGCC 3 cut(s) 89, 281, 507
BspFNI CGCG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 220, 459
BspMAI CTGCAG 3 cut(s) 23, 391, 708
BspPI GGATC 3 cut(s) 68, 241, 978
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 2 cut(s) 508, 741
BssECI CCNNGG 2 cut(s) 67, 90
BssMI GATC 5 cut(s) 73, 233, 404, 478, 970
BssT1I CCWWGG 2 cut(s) 67, 90
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 137, 631, 967
Bst6I CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 951
BstAPI GCANNNNNTGC 3 cut(s) 53, 114, 523
BstC8I GCNNGC 1 cut(s) 819
BstDSI CCRYGG 2 cut(s) 67, 90
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 430
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 3 cut(s) 430, 565, 595
BstKTI GATC 5 cut(s) 76, 236, 407, 481, 973
BstMAI GTCTC 3 cut(s) 303, 355, 978
BstMBI GATC 5 cut(s) 73, 233, 404, 478, 970
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 103, 1134
BstSCI CCNGG 2 cut(s) 229, 342
BstSFI CTRYAG 4 cut(s) 19, 387, 704, 891
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 7 cut(s) 5, 59, 83, 510, 690, 718, 920
BstV2I GAAGAC 1 cut(s) 1147
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 3 cut(s) 89, 281, 507
BtgI CCRYGG 2 cut(s) 67, 90
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 819
CaiI CAGNNNCTG 2 cut(s) 53, 526
CfoI GCGC 3 cut(s) 430, 565, 595
Cfr13I GGNCC 2 cut(s) 280, 1039
Csp6I GTAC 4 cut(s) 138, 484, 744, 963
CviAII CATG 7 cut(s) 68, 91, 100, 354, 944, 993, 1131
CviQI GTAC 4 cut(s) 138, 484, 744, 963
DpnI GATC 5 cut(s) 75, 235, 406, 480, 972
DpnII GATC 5 cut(s) 73, 233, 404, 478, 970
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 951
EarI CTCTTC 7 cut(s) 229, 441, 447, 506, 653, 683, 951
Ecl136II GAGCTC 1 cut(s) 1069
Eco130I CCWWGG 2 cut(s) 67, 90
Eco24I GRGCYC 1 cut(s) 1071
Eco47I GGWCC 1 cut(s) 1039
Eco53kI GAGCTC 1 cut(s) 1069
Eco57I CTGAAG 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 1069
EcoO109I RGGNCCY 1 cut(s) 1039
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 67, 90
EcoT38I GRGCYC 1 cut(s) 1071
ErhI CCWWGG 2 cut(s) 67, 90
FaeI CATG 7 cut(s) 71, 94, 103, 357, 947, 996, 1134
FatI CATG 7 cut(s) 67, 90, 99, 353, 943, 992, 1130
FauI CCCGC 2 cut(s) 198, 333
Fnu4HI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 909
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 1071
Fsp4HI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 909
FspBI CTAG 2 cut(s) 666, 1101
GlaI GCGC 3 cut(s) 429, 564, 594
GluI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 909
GsaI CCCAGC 2 cut(s) 47, 530
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 3 cut(s) 89, 281, 507
HapII CCGG 2 cut(s) 105, 230
HhaI GCGC 3 cut(s) 430, 565, 595
Hin1II CATG 7 cut(s) 71, 94, 103, 357, 947, 996, 1134
Hin6I GCGC 3 cut(s) 428, 563, 593
HinP1I GCGC 3 cut(s) 428, 563, 593
HinfI GANTC 4 cut(s) 394, 737, 896, 1060
HpaII CCGG 2 cut(s) 105, 230
HphI GGTGA 3 cut(s) 56, 309, 1010
Hpy166II GTNNAC 1 cut(s) 888
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 188, 476, 935, 1064
Hpy8I GTNNAC 1 cut(s) 888
Hpy99I CGWCG 1 cut(s) 1076
HpyAV CCTTC 2 cut(s) 553, 766
HpyCH4III ACNGT 3 cut(s) 137, 631, 967
HpyCH4V TGCA 7 cut(s) 21, 83, 99, 156, 389, 706, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
Hsp92II CATG 7 cut(s) 71, 94, 103, 357, 947, 996, 1134
HspAI GCGC 3 cut(s) 428, 563, 593
Kzo9I GATC 5 cut(s) 73, 233, 404, 478, 970
LmnI GCTCC 2 cut(s) 463, 530
Lsp1109I GCAGC 7 cut(s) 5, 59, 83, 510, 690, 718, 920
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 666, 1101
MaeIII GTNAC 1 cut(s) 315
MalI GATC 5 cut(s) 75, 235, 406, 480, 972
MboI GATC 5 cut(s) 73, 233, 404, 478, 970
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 823, 1071, 1115
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 7 cut(s) 142, 158, 293, 303, 651, 808, 876
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 1 cut(s) 746
MmeI TCCRAC 1 cut(s) 423
Mox20I TGGCCA 1 cut(s) 507
MscI TGGCCA 1 cut(s) 507
MseI TTAA 6 cut(s) 296, 642, 654, 801, 807, 879
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 18, 523
MspI CCGG 2 cut(s) 105, 230
MspR9I CCNGG 2 cut(s) 231, 344
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 430
MwoI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 2 cut(s) 67, 90
NdeII GATC 5 cut(s) 73, 233, 404, 478, 970
NlaIII CATG 7 cut(s) 71, 94, 103, 357, 947, 996, 1134
NlaIV GGNNCC 2 cut(s) 220, 459
NmeAIII GCCGAG 1 cut(s) 735
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 2 cut(s) 103, 1134
PaeR7I CTCGAG 1 cut(s) 493
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 3 cut(s) 394, 896, 1060
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 9 cut(s) 20, 49, 98, 402, 432, 525, 705, 708, 910
PleI GAGTC 1 cut(s) 745
PpsI GAGTC 1 cut(s) 745
PpuMI RGGWCCY 1 cut(s) 1039
PshBI ATTAAT 2 cut(s) 642, 807
Psp124BI GAGCTC 1 cut(s) 1071
Psp5II RGGWCCY 1 cut(s) 1039
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 2 cut(s) 43, 526
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 220, 459
PspPI GGNCC 2 cut(s) 280, 1039
PspPPI RGGWCCY 1 cut(s) 1039
PspXI VCTCGAGB 1 cut(s) 493
PstI CTGCAG 3 cut(s) 23, 391, 708
PstNI CAGNNNCTG 2 cut(s) 53, 526
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 18, 523
RsaI GTAC 4 cut(s) 139, 485, 745, 964
RsaNI GTAC 4 cut(s) 138, 484, 744, 963
SacI GAGCTC 1 cut(s) 1071
SaqAI TTAA 6 cut(s) 296, 642, 654, 801, 807, 879
SatI GCNGC 9 cut(s) 19, 48, 97, 401, 431, 524, 704, 707, 909
Sau3AI GATC 5 cut(s) 73, 233, 404, 478, 970
Sau96I GGNCC 2 cut(s) 280, 1039
ScaI AGTACT 3 cut(s) 485, 745, 964
SchI GAGTC 1 cut(s) 746
ScrFI CCNGG 2 cut(s) 231, 344
SduI GDGCHC 3 cut(s) 823, 1071, 1115
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 4 cut(s) 19, 387, 704, 891
Sfr274I CTCGAG 1 cut(s) 493
SinI GGWCC 1 cut(s) 1039
SlaI CTCGAG 1 cut(s) 493
SmlI CTYRAG 3 cut(s) 493, 566, 856
SmoI CTYRAG 3 cut(s) 493, 566, 856
SpeI ACTAGT 1 cut(s) 1100
Sse9I AATT 7 cut(s) 142, 158, 293, 303, 651, 808, 876
SsiI CCGC 6 cut(s) 34, 148, 205, 326, 400, 430
SspI AATATT 1 cut(s) 361
SspMI CTAG 2 cut(s) 666, 1101
SstI GAGCTC 1 cut(s) 1071
StyD4I CCNGG 2 cut(s) 229, 342
StyI CCWWGG 2 cut(s) 67, 90
TaaI ACNGT 3 cut(s) 137, 631, 967
TaqI TCGA 1 cut(s) 494
TaqII GACCGA 1 cut(s) 564
TasI AATT 7 cut(s) 142, 158, 293, 303, 651, 808, 876
TatI WGTACW 3 cut(s) 483, 743, 962
TauI GCSGC 2 cut(s) 403, 433
TfiI GAWTC 3 cut(s) 394, 896, 1060
Tru1I TTAA 6 cut(s) 296, 642, 654, 801, 807, 879
Tru9I TTAA 6 cut(s) 296, 642, 654, 801, 807, 879
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 7 cut(s) 18, 47, 96, 523, 703, 706, 908
Tsp45I GTSAC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 1039
VspI ATTAAT 2 cut(s) 642, 807
XapI RAATTY 1 cut(s) 158
XceI RCATGY 2 cut(s) 103, 1134
XhoI CTCGAG 1 cut(s) 493
XspI CTAG 2 cut(s) 666, 1101
ZrmI AGTACT 3 cut(s) 485, 745, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.