Rh3AG318600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0012262
Physical Location & Seq
Forward (+)
44061770 .. 44064145
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG318600.1

Sequence Viewer

Length: 858 bp
ATGAGACGACAGGACAGCTGCAGTAGTGATATGCGGTTAGACCCAGCAGCATCTGCCTCTGCTCACCATGGAGATCCGAATGCAAAGACCATGGGCTGCATGTCCGGCATTATTTGCTTTCTCTCCAAATACCACCGTACTAATTTCCGCAAATGCAAATTCCTCACATTTGGGAAAACGCAAAATCAAGAGAAGAATAATGGGCGGGTTGGTAATGGTTCCTCTTCTCCCGGATCGTCATCAACAACAATCCAAGCTGCTTCCACTAACAGAATAGTGGCCCAACTAACAGAATTAAACAAAATTGGAGACAAGTCACCATCCTCGCATATTAGTTATCTCCAGGCAGTCTCATGTAATATTGTGCCAAGAAGCCCGACACTTCCAGCAGATATTCGGCGGCGATCAGCACCATCACTGGTAATAGCGCGGCTTATGGGGTTGGAAGAGGAAGAGGCTCCATCAATACAAGTTCAAGATCAGTACTACTACTCGAGGATAACTGGCCAGAAGAGGCAACAGCTGCTGGGAGCATTGGAAAAATGCGACCGAGATTTGAAGGCGCTCAAGCAGATGATAGAAGCTGTTGGTGCGCCACCGAAAAAATCAATGGAGGCGATTGACAATACTGTTGTTGTTATTAATAAGGGAATTAAGAAGAGGTCTAGTGATGGTGCTATTTTGAAGAAGAGTAGTAGTGAGCTGCAGCCGAGTTGTGTTTCTGTGCTTGACGACGAGTCCAGTACTCGTTCTCCCTTCAGCAACCCCCACCACCACTACTCCAAGAAACAAATATCGTTCAATATTAATTACGGTACGTACTTACATGCCCTTAATAATTCCCATGCATCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

285

Amino Acids

31.23

Weight (kDa)

9.54

Isoelectric Point (pI)

68.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 430
AciI CCGC 5 cut(s) 34, 148, 205, 400, 430
AclWI GGATC 2 cut(s) 68, 241
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 742
AfaI GTAC 5 cut(s) 139, 485, 745, 817, 821
AgsI TTSAA 4 cut(s) 476, 559, 685, 802
AhdI GACNNNNNGTC 1 cut(s) 736
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 5 cut(s) 18, 257, 523, 584, 703
AluI AGCT 5 cut(s) 18, 257, 523, 584, 703
Alw26I GTCTC 2 cut(s) 303, 355
AlwI GGATC 2 cut(s) 68, 241
AlwNI CAGNNNCTG 2 cut(s) 53, 526
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 2 cut(s) 279, 505
ApeKI GCWGC 7 cut(s) 18, 47, 96, 257, 523, 703, 706
ApoI RAATTY 1 cut(s) 158
AseI ATTAAT 2 cut(s) 642, 807
AspLEI GCGC 3 cut(s) 430, 565, 595
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 56, 309
AvaI CYCGRG 1 cut(s) 493
BalI TGGCCA 1 cut(s) 507
BbvI GCAGC 7 cut(s) 5, 59, 83, 244, 510, 690, 718
BccI CCATC 4 cut(s) 328, 421, 469, 665
BciT130I CCWGG 1 cut(s) 344
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 303, 355
BfaI CTAG 1 cut(s) 666
BfmI CTRYAG 2 cut(s) 19, 704
BfoI RGCGCY 1 cut(s) 566
BisI GCNGC 9 cut(s) 19, 48, 97, 258, 401, 431, 524, 704, 707
BlsI GCNGC 9 cut(s) 20, 49, 98, 259, 402, 432, 525, 705, 708
BmcAI AGTACT 2 cut(s) 485, 745
Bme1390I CCNGG 2 cut(s) 231, 344
BmeRI GACNNNNNGTC 1 cut(s) 736
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 220, 459
BmrFI CCNGG 2 cut(s) 231, 344
BmsI GCATC 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 819
BsaBI GATNNNNATC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 67, 90
BsaXI ACNNNNNCTCC 4 cut(s) 736, 764, 766, 794
Bse1I ACTGG 3 cut(s) 423, 508, 741
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 67, 90
BseGI GGATG 1 cut(s) 320
BseJI GATNNNNATC 1 cut(s) 238
BseNI ACTGG 3 cut(s) 423, 508, 741
BseXI GCAGC 7 cut(s) 5, 59, 83, 244, 510, 690, 718
BseYI CCCAGC 2 cut(s) 43, 526
Bsh1236I CGCG 1 cut(s) 430
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 2 cut(s) 281, 507
BsiEI CGRYCG 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 2 cut(s) 105, 231
BsmAI GTCTC 2 cut(s) 303, 355
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 2 cut(s) 281, 507
BsoBI CYCGRG 1 cut(s) 493
Bsp143I GATC 4 cut(s) 73, 233, 404, 478
Bsp19I CCATGG 2 cut(s) 67, 90
BspACI CCGC 5 cut(s) 34, 148, 205, 400, 430
BspANI GGCC 2 cut(s) 281, 507
BspFNI CGCG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 220, 459
BspMAI CTGCAG 2 cut(s) 23, 708
BspPI GGATC 2 cut(s) 68, 241
BsrI ACTGG 3 cut(s) 423, 508, 741
BssECI CCNNGG 2 cut(s) 67, 90
BssMI GATC 4 cut(s) 73, 233, 404, 478
BssT1I CCWWGG 2 cut(s) 67, 90
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 137, 631, 815
Bst6I CTCTTC 6 cut(s) 229, 441, 447, 506, 653, 683
BstAPI GCANNNNNTGC 3 cut(s) 53, 114, 523
BstBAI YACGTR 1 cut(s) 819
BstDSI CCRYGG 2 cut(s) 67, 90
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 430
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 3 cut(s) 430, 565, 595
BstKTI GATC 4 cut(s) 76, 236, 407, 481
BstMAI GTCTC 2 cut(s) 303, 355
BstMBI GATC 4 cut(s) 73, 233, 404, 478
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 103, 830
BstSCI CCNGG 2 cut(s) 229, 342
BstSFI CTRYAG 2 cut(s) 19, 704
BstSNI TACGTA 1 cut(s) 819
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 7 cut(s) 5, 59, 83, 244, 510, 690, 718
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 281, 507
BtgI CCRYGG 2 cut(s) 67, 90
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 416
CaiI CAGNNNCTG 2 cut(s) 53, 526
CfoI GCGC 3 cut(s) 430, 565, 595
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 5 cut(s) 138, 484, 744, 816, 820
CviAII CATG 6 cut(s) 68, 91, 100, 354, 827, 845
CviQI GTAC 5 cut(s) 138, 484, 744, 816, 820
DpnI GATC 4 cut(s) 75, 235, 406, 480
DpnII GATC 4 cut(s) 73, 233, 404, 478
DriI GACNNNNNGTC 1 cut(s) 736
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 6 cut(s) 229, 441, 447, 506, 653, 683
Eam1105I GACNNNNNGTC 1 cut(s) 736
EarI CTCTTC 6 cut(s) 229, 441, 447, 506, 653, 683
Eco105I TACGTA 1 cut(s) 819
Eco130I CCWWGG 2 cut(s) 67, 90
Eco57I CTGAAG 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 67, 90
EcoT22I ATGCAT 1 cut(s) 850
ErhI CCWWGG 2 cut(s) 67, 90
FaeI CATG 6 cut(s) 71, 94, 103, 357, 830, 848
FaiI YATR 9 cut(s) 32, 69, 92, 101, 330, 355, 437, 828, 846
FatI CATG 6 cut(s) 67, 90, 99, 353, 826, 844
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 9 cut(s) 19, 48, 97, 258, 401, 431, 524, 704, 707
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 9 cut(s) 19, 48, 97, 258, 401, 431, 524, 704, 707
FspBI CTAG 1 cut(s) 666
GlaI GCGC 3 cut(s) 429, 564, 594
GluI GCNGC 9 cut(s) 19, 48, 97, 258, 401, 431, 524, 704, 707
GsaI CCCAGC 2 cut(s) 47, 530
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 2 cut(s) 281, 507
HapII CCGG 2 cut(s) 105, 231
HhaI GCGC 3 cut(s) 430, 565, 595
Hin1II CATG 6 cut(s) 71, 94, 103, 357, 830, 848
Hin6I GCGC 3 cut(s) 428, 563, 593
HinP1I GCGC 3 cut(s) 428, 563, 593
HinfI GANTC 1 cut(s) 737
HpaII CCGG 2 cut(s) 105, 231
HphI GGTGA 2 cut(s) 56, 309
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 188, 476
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 2 cut(s) 553, 766
HpyCH4III ACNGT 3 cut(s) 137, 631, 815
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 6 cut(s) 21, 83, 99, 156, 706, 848
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
HpySE526I ACGT 1 cut(s) 818
Hsp92II CATG 6 cut(s) 71, 94, 103, 357, 830, 848
HspAI GCGC 3 cut(s) 428, 563, 593
Kzo9I GATC 4 cut(s) 73, 233, 404, 478
LmnI GCTCC 2 cut(s) 463, 530
Lsp1109I GCAGC 7 cut(s) 5, 59, 83, 244, 510, 690, 718
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 666
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 1 cut(s) 315
MalI GATC 4 cut(s) 75, 235, 406, 480
MboI GATC 4 cut(s) 73, 233, 404, 478
MboII GAAGA 9 cut(s) 205, 216, 458, 464, 523, 670, 697, 700, 843
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 7 cut(s) 142, 158, 293, 303, 651, 808, 838
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 1 cut(s) 746
MmeI TCCRAC 1 cut(s) 423
Mox20I TGGCCA 1 cut(s) 507
Mph1103I ATGCAT 1 cut(s) 850
MscI TGGCCA 1 cut(s) 507
MseI TTAA 6 cut(s) 296, 642, 654, 807, 834, 856
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 18, 523
MspI CCGG 2 cut(s) 105, 231
MspR9I CCNGG 2 cut(s) 231, 344
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 430
MwoI GCNNNNNNNGC 5 cut(s) 53, 105, 114, 523, 590
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 2 cut(s) 67, 90
NdeII GATC 4 cut(s) 73, 233, 404, 478
NlaIII CATG 6 cut(s) 71, 94, 103, 357, 830, 848
NlaIV GGNNCC 2 cut(s) 220, 459
NmeAIII GCCGAG 1 cut(s) 735
NmuCI GTSAC 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 2 cut(s) 103, 830
PaeR7I CTCGAG 1 cut(s) 493
PctI GAATGC 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 9 cut(s) 20, 49, 98, 259, 402, 432, 525, 705, 708
PleI GAGTC 1 cut(s) 745
PpsI GAGTC 1 cut(s) 745
Ppu21I YACGTR 1 cut(s) 819
PshBI ATTAAT 2 cut(s) 642, 807
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 2 cut(s) 43, 526
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 220, 459
PspPI GGNCC 1 cut(s) 280
PspXI VCTCGAGB 1 cut(s) 493
PstI CTGCAG 2 cut(s) 23, 708
PstNI CAGNNNCTG 2 cut(s) 53, 526
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 18, 523
RsaI GTAC 5 cut(s) 139, 485, 745, 817, 821
RsaNI GTAC 5 cut(s) 138, 484, 744, 816, 820
SaqAI TTAA 6 cut(s) 296, 642, 654, 807, 834, 856
SatI GCNGC 9 cut(s) 19, 48, 97, 258, 401, 431, 524, 704, 707
Sau3AI GATC 4 cut(s) 73, 233, 404, 478
Sau96I GGNCC 1 cut(s) 280
ScaI AGTACT 2 cut(s) 485, 745
SchI GAGTC 1 cut(s) 746
ScrFI CCNGG 2 cut(s) 231, 344
SetI ASST 7 cut(s) 20, 259, 525, 586, 665, 705, 821
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 2 cut(s) 19, 704
Sfr274I CTCGAG 1 cut(s) 493
SlaI CTCGAG 1 cut(s) 493
SmlI CTYRAG 2 cut(s) 493, 566
SmoI CTYRAG 2 cut(s) 493, 566
SnaBI TACGTA 1 cut(s) 819
Sse9I AATT 7 cut(s) 142, 158, 293, 303, 651, 808, 838
SsiI CCGC 5 cut(s) 34, 148, 205, 400, 430
SspI AATATT 2 cut(s) 361, 805
SspMI CTAG 1 cut(s) 666
StyD4I CCNGG 2 cut(s) 229, 342
StyI CCWWGG 2 cut(s) 67, 90
TaaI ACNGT 3 cut(s) 137, 631, 815
TaiI ACGT 1 cut(s) 821
TaqI TCGA 1 cut(s) 494
TaqII GACCGA 1 cut(s) 564
TasI AATT 7 cut(s) 142, 158, 293, 303, 651, 808, 838
TatI WGTACW 2 cut(s) 483, 743
TauI GCSGC 2 cut(s) 403, 433
Tru1I TTAA 6 cut(s) 296, 642, 654, 807, 834, 856
Tru9I TTAA 6 cut(s) 296, 642, 654, 807, 834, 856
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 7 cut(s) 18, 47, 96, 257, 523, 703, 706
Tsp45I GTSAC 1 cut(s) 315
TspRI CASTG 1 cut(s) 423
VspI ATTAAT 2 cut(s) 642, 807
XapI RAATTY 1 cut(s) 158
XceI RCATGY 2 cut(s) 103, 830
XhoI CTCGAG 1 cut(s) 493
XspI CTAG 1 cut(s) 666
ZrmI AGTACT 2 cut(s) 485, 745
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.