AT3G57440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010860
Physical Location & Seq
Forward (+)
21258646 .. 21260675
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57440.2

Sequence Viewer

Length: 726 bp
ATGGCGACGTATCCTTCTGTGATTGAGAGAACCGTTGCTTCGTCTCTTCTTCTCCTTTCCTATGGACCAGTGTTCTTCTCACCTAAAAGGTCGGAATCTGTAGAGGAATCGAGCTATGTGAGGAAGTGGTGTCACGAAGGAAGTTCGAACTTGAGCTTGATGTTGGGATCTAGCGGATCGAGATCTTGTGGCTCGGCTTTGTCCAGCGATGGTTCGTTTGGGATGAGTGAGGATCGCGAATTCAAAATCAATTATACTGGAGATCCGTTTCGTCTCATGAATTTCAAGACAGCGAGAAAACGCCGTTCTCAGGTCATTTGGGGATCCTTCAACTTTAAGCCAACACATTTGAAGATGAATCCTGTGTGTGATGTTCTCTCAACATGCTCTGTTGATTCCAAAGATGAGTCATGTTTGTCAACTGGTTCAAGCGAGGTTTCTAGCGTAGAAAGCAGAATCAAAGTCAGGAATCAGAAAAGCAATGAGAAACTTAGAGGAGGAGGGAAGACGATGAAAGAAAGTAGCAGGTCAAGTTCTATTCGCCGTAGAGCCAAAGACATCTTGGAGTTTCTTTCCTCTGAATCTTCTTCAGAAGTTCACATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGATTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.81

Weight (kDa)

9.55

Isoelectric Point (pI)

72.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_74 PF25370 177 - 217 5.9e-22 HTH three-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57440 AT3G57440
fragaria_vesca FvH4_6g23771 FvH4_6g23771
malus_domestica MD12G1073500.v1.1 MD14G1067100.v1.1
prunus_persica Prupe.7G061400_v2.0.a1
pyrus_communis pycom14g05020
rosa_chinensis RchiOBHm_Chr3g0482221
rosa_laevigata RLG00000023361
rosa_multiflora Rmu_sc0017838.1_g000001
rosa_roxburghii Rroxscaffold_6G00399440 Rroxscaffold_6G00399480 Rroxscaffold_6G00399960
rosa_rugosa Rorug03G0195700
rosa_samantha Rh3AG247200 Rh3BG281800 Rh3CG277800 Rh3DG274400
rosa_wichuraiana Rw3G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 516
AccII CGCG 1 cut(s) 237
AciI CCGC 1 cut(s) 174
AclWI GGATC 7 cut(s) 175, 184, 240, 257, 318, 331, 695
AcsI RAATTY 2 cut(s) 239, 280
AcuI CTGAAG 1 cut(s) 573
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 6 cut(s) 244, 286, 331, 352, 429, 658
AluBI AGCT 3 cut(s) 114, 156, 641
AluI AGCT 3 cut(s) 114, 156, 641
Alw26I GTCTC 2 cut(s) 48, 278
AlwI GGATC 7 cut(s) 175, 184, 240, 257, 318, 331, 695
ApoI RAATTY 2 cut(s) 239, 280
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 72
AsuII TTCGAA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 65
BamHI GGATCC 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 512, 700
BccI CCATC 2 cut(s) 203, 655
BceAI ACGGC 2 cut(s) 288, 528
BciVI GTATCC 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 48, 278
BfaI CTAG 2 cut(s) 171, 441
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 516
BfuI GTATCC 1 cut(s) 21
BglII AGATCT 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 325
BpiI GAAGAC 2 cut(s) 512, 700
BpmI CTGGAG 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 3 cut(s) 68, 262, 427
Bse3DI GCAATG 1 cut(s) 487
Bse8I GATNNNNATC 1 cut(s) 181
BseGI GGATG 2 cut(s) 228, 600
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 2 cut(s) 323, 658
BseNI ACTGG 3 cut(s) 68, 262, 427
BseRI GAGGAG 2 cut(s) 510, 513
Bsh1236I CGCG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 2 cut(s) 48, 278
BsmBI CGTCTC 2 cut(s) 48, 278
BsmFI GGGAC 1 cut(s) 609
Bsp119I TTCGAA 1 cut(s) 146
Bsp143I GATC 7 cut(s) 167, 176, 182, 232, 262, 323, 700
Bsp68I TCGCGA 1 cut(s) 237
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 322, 657
BspFNI CGCG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 516
BspPI GGATC 7 cut(s) 175, 184, 240, 257, 318, 331, 695
BspT104I TTCGAA 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 3 cut(s) 68, 262, 427
BssMI GATC 7 cut(s) 167, 176, 182, 232, 262, 323, 700
Bst4CI ACNGT 2 cut(s) 34, 623
Bst6I CTCTTC 2 cut(s) 51, 668
BstBI TTCGAA 1 cut(s) 146
BstDEI CTNAG 3 cut(s) 309, 491, 644
BstF5I GGATG 2 cut(s) 228, 600
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 7 cut(s) 170, 179, 185, 235, 265, 326, 703
BstMAI GTCTC 2 cut(s) 48, 278
BstMBI GATC 7 cut(s) 167, 176, 182, 232, 262, 323, 700
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 387
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 237
BstV2I GAAGAC 2 cut(s) 512, 700
BstX2I RGATCY 4 cut(s) 167, 182, 262, 323
BstYI RGATCY 4 cut(s) 167, 182, 262, 323
BsuI GTATCC 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 228, 600
BtsIMutI CAGTG 1 cut(s) 75
BtuMI TCGCGA 1 cut(s) 237
BveI ACCTGC 1 cut(s) 516
CciI TCATGA 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 65
CviAII CATG 4 cut(s) 277, 384, 411, 723
CviJI RGCY 7 cut(s) 114, 156, 192, 197, 340, 551, 641
CviKI_1 RGCY 7 cut(s) 114, 156, 192, 197, 340, 551, 641
DdeI CTNAG 3 cut(s) 309, 491, 644
DpnI GATC 7 cut(s) 169, 178, 184, 234, 264, 325, 702
DpnII GATC 7 cut(s) 167, 176, 182, 232, 262, 323, 700
Eam1104I CTCTTC 2 cut(s) 51, 668
EarI CTCTTC 2 cut(s) 51, 668
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 239
Esp3I CGTCTC 2 cut(s) 48, 278
FaeI CATG 4 cut(s) 280, 387, 414, 726
FaiI YATR 7 cut(s) 63, 117, 255, 278, 385, 412, 724
FaqI GGGAC 1 cut(s) 609
FatI CATG 4 cut(s) 276, 383, 410, 722
FokI GGATG 2 cut(s) 235, 587
FspBI CTAG 2 cut(s) 171, 441
GsuI CTGGAG 1 cut(s) 279
Hin1II CATG 4 cut(s) 280, 387, 414, 726
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HinfI GANTC 9 cut(s) 95, 107, 358, 395, 407, 456, 469, 581, 610
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 420, 598
Hpy188I TCNGA 6 cut(s) 94, 474, 580, 592, 609, 647
Hpy188III TCNNGA 7 cut(s) 134, 180, 236, 277, 286, 466, 626
Hpy8I GTNNAC 2 cut(s) 420, 598
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 24, 131, 337
HpyCH4III ACNGT 2 cut(s) 34, 623
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
HpyF3I CTNAG 3 cut(s) 309, 491, 644
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 4 cut(s) 280, 387, 414, 726
Kzo9I GATC 7 cut(s) 167, 176, 182, 232, 262, 323, 700
MaeI CTAG 2 cut(s) 171, 441
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 131
MalI GATC 7 cut(s) 169, 178, 184, 234, 264, 325, 702
MboI GATC 7 cut(s) 167, 176, 182, 232, 262, 323, 700
MflI RGATCY 4 cut(s) 167, 182, 262, 323
MluCI AATT 3 cut(s) 239, 250, 280
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 336
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 450
NdeII GATC 7 cut(s) 167, 176, 182, 232, 262, 323, 700
NlaIII CATG 4 cut(s) 280, 387, 414, 726
NlaIV GGNNCC 1 cut(s) 325
NmeAIII GCCGAG 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 131
NruI TCGCGA 1 cut(s) 237
NspI RCATGY 1 cut(s) 387
NspV TTCGAA 1 cut(s) 146
PagI TCATGA 1 cut(s) 276
PfeI GAWTC 8 cut(s) 95, 107, 358, 395, 456, 469, 581, 610
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 4 cut(s) 167, 182, 262, 323
RruI TCGCGA 1 cut(s) 237
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 7 cut(s) 167, 176, 182, 232, 262, 323, 700
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 416
SfcI CTRYAG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 146
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 3 cut(s) 239, 250, 280
SsiI CCGC 1 cut(s) 174
SspMI CTAG 2 cut(s) 171, 441
TaaI ACNGT 2 cut(s) 34, 623
TaiI ACGT 1 cut(s) 11
TaqI TCGA 3 cut(s) 110, 146, 179
TasI AATT 3 cut(s) 239, 250, 280
TfiI GAWTC 8 cut(s) 95, 107, 358, 395, 456, 469, 581, 610
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 293, 371, 527
TspGWI ACGGA 2 cut(s) 255, 593
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 2 cut(s) 239, 280
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XspI CTAG 2 cut(s) 171, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.