MD14G1067100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0010860
Physical Location & Seq
Forward (+)
7276651 .. 7277408
758 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1067100.v1.1.491

Sequence Viewer

Length: 384 bp
ATGAATGTCGAGTGTTCCAGCAGGCGAAGCCGAAGCAAACGACTGTTCATGTCCAAAACTGGATGGAAAGGTATCAAGATTGAAACGGTTTGGAAGGCTTCGATGAAGCGGAGGCGGGTGAGGTGTTTGGTTATGGACAAGAAAGCCGAAGCCATCCTGAATCTCTTGTCTCGCGGCGGCTGTCTCCCTGAAGTCAAGATACGTACGGAGTTGGGTGACAATCCCGACACCAGCAAAGCACTAAGAAAGTTGCTGAGGCTTGGGAAGGTCACAAGAGTAGGGGCAGGAGGACGTCACCAGCCATATGCTTACACGGTATATGTATTTATATTAAAGTTGGTTATTTATGTGTGTATTTTTACTCACAATCCTTTAGTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.54

Weight (kDa)

10.6

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_74 PF25370 45 - 82 3.7e-17 HTH three-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57440 AT3G57440
fragaria_vesca FvH4_6g23771 FvH4_6g23771
malus_domestica MD12G1073500.v1.1 MD14G1067100.v1.1
prunus_persica Prupe.7G061400_v2.0.a1
pyrus_communis pycom14g05020
rosa_chinensis RchiOBHm_Chr3g0482221
rosa_laevigata RLG00000023361
rosa_multiflora Rmu_sc0017838.1_g000001
rosa_roxburghii Rroxscaffold_6G00399440 Rroxscaffold_6G00399480 Rroxscaffold_6G00399960
rosa_rugosa Rorug03G0195700
rosa_samantha Rh3AG247200 Rh3BG281800 Rh3CG277800 Rh3DG274400
rosa_wichuraiana Rw3G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 295
AccII CGCG 1 cut(s) 174
AciI CCGC 4 cut(s) 109, 115, 174, 177
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 2 cut(s) 205, 378
AgsI TTSAA 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 174, 188
AsuHPI GGTGA 3 cut(s) 130, 227, 287
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BbvCI CCTCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 57, 161
BcoDI GTCTC 2 cut(s) 174, 188
BisI GCNGC 2 cut(s) 175, 178
BlsI GCNGC 2 cut(s) 176, 179
BmcAI AGTACT 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 64
BseGI GGATG 2 cut(s) 68, 153
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 174
BsiWI CGTACG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 174, 188
BspACI CCGC 4 cut(s) 109, 115, 174, 177
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 292
Bst4CI ACNGT 4 cut(s) 45, 88, 316, 381
BstACI GRCGYC 1 cut(s) 292
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 242, 254
BstF5I GGATG 2 cut(s) 68, 153
BstFNI CGCG 1 cut(s) 174
BstMAI GTCTC 2 cut(s) 174, 188
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstSNI TACGTA 1 cut(s) 203
BstUI CGCG 1 cut(s) 174
BtsCI GGATG 2 cut(s) 68, 153
Cac8I GCNNGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 204, 377
CviAII CATG 1 cut(s) 49
CviJI RGCY 7 cut(s) 30, 98, 146, 152, 180, 259, 301
CviKI_1 RGCY 7 cut(s) 30, 98, 146, 152, 180, 259, 301
CviQI GTAC 2 cut(s) 204, 377
DdeI CTNAG 2 cut(s) 242, 254
Eco105I TACGTA 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 210
FaeI CATG 1 cut(s) 52
FaiI YATR 8 cut(s) 50, 134, 304, 306, 319, 321, 329, 348
FatI CATG 1 cut(s) 48
FauI CCCGC 1 cut(s) 108
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 175, 178
FokI GGATG 2 cut(s) 75, 140
Fsp4HI GCNGC 2 cut(s) 175, 178
GluI GCNGC 2 cut(s) 175, 178
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 1 cut(s) 52
HinfI GANTC 1 cut(s) 160
HphI GGTGA 3 cut(s) 130, 227, 287
Hpy188III TCNNGA 4 cut(s) 76, 157, 196, 224
HpyAV CCTTC 2 cut(s) 88, 259
HpyCH4III ACNGT 4 cut(s) 45, 88, 316, 381
HpyCH4IV ACGT 2 cut(s) 202, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 2 cut(s) 242, 254
HpySE526I ACGT 2 cut(s) 202, 292
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 1 cut(s) 52
LpnPI CCDG 8 cut(s) 7, 31, 45, 170, 201, 244, 270, 311
MaeII ACGT 2 cut(s) 202, 292
MaeIII GTNAC 3 cut(s) 215, 268, 293
MnlI CCTC 4 cut(s) 105, 114, 249, 281
MseI TTAA 1 cut(s) 332
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeI CATATG 1 cut(s) 304
NlaIII CATG 1 cut(s) 52
NmuCI GTSAC 3 cut(s) 215, 268, 293
PfeI GAWTC 1 cut(s) 160
Pfl23II CGTACG 1 cut(s) 203
PkrI GCNGC 2 cut(s) 176, 179
Ppu21I YACGTR 1 cut(s) 203
PspLI CGTACG 1 cut(s) 203
RsaI GTAC 2 cut(s) 205, 378
RsaNI GTAC 2 cut(s) 204, 377
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 175, 178
ScaI AGTACT 1 cut(s) 378
SetI ASST 5 cut(s) 73, 125, 205, 270, 295
SnaBI TACGTA 1 cut(s) 203
SsiI CCGC 4 cut(s) 109, 115, 174, 177
TaaI ACNGT 4 cut(s) 45, 88, 316, 381
TaiI ACGT 2 cut(s) 205, 295
TaqI TCGA 2 cut(s) 9, 101
TatI WGTACW 1 cut(s) 376
TauI GCSGC 2 cut(s) 177, 180
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseFI GTSAC 3 cut(s) 215, 268, 293
Tsp45I GTSAC 3 cut(s) 215, 268, 293
TspDTI ATGAA 3 cut(s) 17, 37, 119
TspGWI ACGGA 1 cut(s) 221
ZraI GACGTC 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.