Rroxscaffold_6G00399440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010860
Physical Location & Seq
Forward (+)
21351798 .. 21353049
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399440.1

Sequence Viewer

Length: 408 bp
ATGGCGCCGTTTCATGTTCAAGCGAACGCACTGCTGCTTCGGCTCTGCTCCTCCTCACCGGGCTGTTTGGATGGTGGCGATGAGTCATCGGTTGTGAGATCGGAGCTAGGAAAGGCGACCGTACTATTTCCAGAGGTCAGAGCTTTGTTTCCGGCGACTCCAAATCCTGCTGCACTTCGTCCTTGCTTGCTGGTTCCAGAGAATGCCGAGCAGAAAAACCCGCTCGAAGATCCAAGGCGGCGGCGTGAAATTCAACAGCTGGAAAACTCGCTCGGGCGTGAAGGTGGCCATGACGACGTCGTTTGCTGCTGCCTCCACGTCCTCGGAGTCCTCCTGCCTGTCCAGTGCGGCTTCGAGCGCGCGAAGCCGTTACTACAAGGCCAAAGCCGCTGGGAGCAGCTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.79

Weight (kDa)

5.61

Isoelectric Point (pI)

78.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57440 AT3G57440
fragaria_vesca FvH4_6g23771 FvH4_6g23771
malus_domestica MD12G1073500.v1.1 MD14G1067100.v1.1
prunus_persica Prupe.7G061400_v2.0.a1
pyrus_communis pycom14g05020
rosa_chinensis RchiOBHm_Chr3g0482221
rosa_laevigata RLG00000023361
rosa_multiflora Rmu_sc0017838.1_g000001
rosa_roxburghii Rroxscaffold_6G00399440 Rroxscaffold_6G00399480 Rroxscaffold_6G00399960
rosa_rugosa Rorug03G0195700
rosa_samantha Rh3AG247200 Rh3BG281800 Rh3CG277800 Rh3DG274400
rosa_wichuraiana Rw3G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 223
AccII CGCG 2 cut(s) 360, 362
AciI CCGC 5 cut(s) 221, 238, 241, 348, 388
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 249
AcyI GRCGYC 2 cut(s) 5, 297
AfaI GTAC 1 cut(s) 123
AgsI TTSAA 2 cut(s) 20, 254
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 4 cut(s) 106, 143, 259, 400
AluI AGCT 4 cut(s) 106, 143, 259, 400
AlwI GGATC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 2 cut(s) 286, 379
ApeKI GCWGC 5 cut(s) 34, 170, 306, 309, 397
ApoI RAATTY 1 cut(s) 249
AspLEI GCGC 3 cut(s) 7, 360, 362
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 48
AvaI CYCGRG 1 cut(s) 272
BalI TGGCCA 1 cut(s) 288
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 4 cut(s) 21, 157, 293, 296
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BcnI CCSGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 9 cut(s) 35, 171, 239, 242, 307, 310, 349, 388, 398
BlsI GCNGC 9 cut(s) 36, 172, 240, 243, 308, 311, 350, 389, 399
Bme1390I CCNGG 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 6, 195
BmrFI CCNGG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 60
BsaHI GRCGYC 2 cut(s) 5, 297
BsaJI CCNNGG 2 cut(s) 233, 322
Bse1I ACTGG 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 233, 322
BseGI GGATG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 343
BsePI GCGCGC 1 cut(s) 358
BseRI GAGGAG 2 cut(s) 40, 43
BseXI GCAGC 4 cut(s) 21, 157, 293, 296
BseYI CCCAGC 1 cut(s) 390
BsgI GTGCAG 1 cut(s) 156
Bsh1236I CGCG 2 cut(s) 360, 362
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 288, 381
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 59, 152
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 288, 381
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 2 cut(s) 98, 229
BspACI CCGC 5 cut(s) 221, 238, 241, 348, 388
BspANI GGCC 2 cut(s) 288, 381
BspFNI CGCG 2 cut(s) 360, 362
BspLI GGNNCC 2 cut(s) 6, 195
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 233, 322
BssHII GCGCGC 1 cut(s) 358
BssMI GATC 2 cut(s) 98, 229
BssNI GRCGYC 2 cut(s) 5, 297
BssT1I CCWWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 2 cut(s) 5, 297
BstC8I GCNNGC 2 cut(s) 188, 360
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 2 cut(s) 360, 362
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 360, 362
BstKTI GATC 2 cut(s) 101, 232
BstMBI GATC 2 cut(s) 98, 229
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 4 cut(s) 40, 357, 364, 387
BstSCI CCNGG 1 cut(s) 58
BstUI CGCG 2 cut(s) 360, 362
BstV1I GCAGC 4 cut(s) 21, 157, 293, 296
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 2 cut(s) 288, 381
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 29, 350
Cac8I GCNNGC 2 cut(s) 188, 360
CfoI GCGC 3 cut(s) 7, 360, 362
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 14, 290
CviQI GTAC 1 cut(s) 122
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 100, 231
DpnII GATC 2 cut(s) 98, 229
EaeI YGGCCR 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 233
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 2 cut(s) 17, 293
FaiI YATR 2 cut(s) 15, 291
FatI CATG 2 cut(s) 13, 289
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 9 cut(s) 35, 171, 239, 242, 307, 310, 349, 388, 398
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 9 cut(s) 35, 171, 239, 242, 307, 310, 349, 388, 398
FspBI CTAG 1 cut(s) 107
GlaI GCGC 3 cut(s) 6, 359, 361
GluI GCNGC 9 cut(s) 35, 171, 239, 242, 307, 310, 349, 388, 398
GsaI CCCAGC 1 cut(s) 394
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 288, 381
HapII CCGG 2 cut(s) 59, 152
HhaI GCGC 3 cut(s) 7, 360, 362
Hin1I GRCGYC 2 cut(s) 5, 297
Hin1II CATG 2 cut(s) 17, 293
Hin6I GCGC 3 cut(s) 5, 358, 360
HinP1I GCGC 3 cut(s) 5, 358, 360
HinfI GANTC 3 cut(s) 83, 157, 327
HpaII CCGG 2 cut(s) 59, 152
HphI GGTGA 1 cut(s) 48
Hpy188I TCNGA 3 cut(s) 103, 140, 326
Hpy188III TCNNGA 2 cut(s) 131, 197
Hpy99I CGWCG 2 cut(s) 299, 302
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 297, 318
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 357, 364, 387
HpySE526I ACGT 2 cut(s) 297, 318
Hsp92I GRCGYC 2 cut(s) 5, 297
Hsp92II CATG 2 cut(s) 17, 293
HspAI GCGC 3 cut(s) 5, 358, 360
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 98, 229
LmnI GCTCC 3 cut(s) 53, 103, 394
Lsp1109I GCAGC 4 cut(s) 21, 157, 293, 296
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 297, 318
MaeIII GTNAC 1 cut(s) 369
MalI GATC 2 cut(s) 100, 231
MbiI CCGCTC 1 cut(s) 223
MboI GATC 2 cut(s) 98, 229
MboII GAAGA 1 cut(s) 239
MflI RGATCY 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 288
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 92, 151, 336
MnlI CCTC 6 cut(s) 61, 64, 127, 323, 332, 341
Mox20I TGGCCA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 288
MseI TTAA 1 cut(s) 406
Msp20I TGGCCA 1 cut(s) 288
MspA1I CMGCKG 3 cut(s) 259, 390, 400
MspI CCGG 2 cut(s) 59, 152
MspR9I CCNGG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 208
MvnI CGCG 2 cut(s) 360, 362
MwoI GCNNNNNNNGC 4 cut(s) 40, 357, 364, 387
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 60
NdeII GATC 2 cut(s) 98, 229
NlaIII CATG 2 cut(s) 17, 293
NlaIV GGNNCC 2 cut(s) 6, 195
NmeAIII GCCGAG 1 cut(s) 232
PauI GCGCGC 1 cut(s) 358
PctI GAATGC 1 cut(s) 208
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 9 cut(s) 36, 172, 240, 243, 308, 311, 350, 389, 399
PleI GAGTC 3 cut(s) 91, 151, 335
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 91, 151, 335
PspFI CCCAGC 1 cut(s) 390
PspN4I GGNNCC 2 cut(s) 6, 195
PsuI RGATCY 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 296
PteI GCGCGC 1 cut(s) 358
PvuII CAGCTG 2 cut(s) 259, 400
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 406
SatI GCNGC 9 cut(s) 35, 171, 239, 242, 307, 310, 349, 388, 398
Sau3AI GATC 2 cut(s) 98, 229
SchI GAGTC 3 cut(s) 92, 151, 336
ScrFI CCNGG 1 cut(s) 60
SetI ASST 8 cut(s) 108, 138, 145, 261, 286, 300, 321, 402
SfoI GGCGCC 1 cut(s) 6
Sse9I AATT 1 cut(s) 249
SsiI CCGC 5 cut(s) 221, 238, 241, 348, 388
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 300, 321
TaqI TCGA 2 cut(s) 225, 354
TasI AATT 1 cut(s) 249
TauI GCSGC 4 cut(s) 241, 244, 351, 390
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TscAI CASTG 2 cut(s) 36, 350
TseI GCWGC 5 cut(s) 34, 170, 306, 309, 397
TspRI CASTG 2 cut(s) 36, 350
Tth111I GACNNNGTC 1 cut(s) 296
XapI RAATTY 1 cut(s) 249
XspI CTAG 1 cut(s) 107
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.