Rh3CG277800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0010860
Physical Location & Seq
Reverse (-)
27867854 .. 27870065
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG277800.1

Sequence Viewer

Length: 714 bp
ATGGCGCCGTTTCCATGTTCAAGCGAACGCACTGCTGCTTCGGCTCTGCTCCTCCTCACCGTCACGCCACCACCGCCTTCCAAGGGCTGTTTGGATGATGGCGATGAGTCATCGGTGGTGAGATCGGAGCTAGGAAAGAGCAAGAGTACTATTTCCAGAGATCAGAGCTTTGTTTCCGGCGACTCCAAATCCTGCTGCACTTCGTCCTTGCTTGCTGGTTCCAGGGAGGAGATTCAAGCTCGCACAATCAGGATGATTGCTTTTGCAGCTCTTCATCGTGATGTGAAGCTCAAAGCCGTGCAGAAAAACCGCTCGAAGGTCCAAGGCGGCGGCGTGAAATTCAACAGCTGGAAAACTCGCTCGGGCGTGAAGGTGGCCATGACGACGTCGTTTGCAGCCTCCACGTCCTCGGAGTCCTCGTGCCTGTCCAGCGCGGCTTCGAGCGCGCGAAGCCGTTACTACGAGCCGAAAGCCGCTGGGATCAGCTGGACTAAGAAGAAGAAGAAGCAGGTGGGGTCGGTTATGCTGCGGCGCAAAGCCGAAGCCATTCTGAAGCTGCTCTCTCAAGGCTGCTACTCTGAAGTCAAGATCCGTCAGACTCTCGGTGACAGTCCGGACACCAGCAAAGCGCTCCGACTGTTGTTGAAGTTTGAGGAGGTGAAAAGAACAGGCGCAGGAGGCCGTCGCAGCCCTTATATTTACACGATAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.51

Weight (kDa)

10.08

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_74 PF25370 175 - 213 8.7e-23 HTH three-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57440 AT3G57440
fragaria_vesca FvH4_6g23771 FvH4_6g23771
malus_domestica MD12G1073500.v1.1 MD14G1067100.v1.1
prunus_persica Prupe.7G061400_v2.0.a1
pyrus_communis pycom14g05020
rosa_chinensis RchiOBHm_Chr3g0482221
rosa_laevigata RLG00000023361
rosa_multiflora Rmu_sc0017838.1_g000001
rosa_roxburghii Rroxscaffold_6G00399440 Rroxscaffold_6G00399480 Rroxscaffold_6G00399960
rosa_rugosa Rorug03G0195700
rosa_samantha Rh3AG247200 Rh3BG281800 Rh3CG277800 Rh3DG274400
rosa_wichuraiana Rw3G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 499
AatII GACGTC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 499
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 312
AccII CGCG 3 cut(s) 434, 446, 448
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 7 cut(s) 74, 310, 327, 330, 434, 474, 529
AclWI GGATC 2 cut(s) 488, 583
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 572, 600
AcyI GRCGYC 2 cut(s) 5, 386
AfaI GTAC 1 cut(s) 148
AfeI AGCGCT 1 cut(s) 630
AfiI CCNNNNNNNGG 2 cut(s) 83, 316
AgsI TTSAA 4 cut(s) 21, 236, 343, 646
AjiI CACGTC 1 cut(s) 405
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 8 cut(s) 130, 168, 239, 269, 289, 348, 486, 556
AluI AGCT 8 cut(s) 130, 168, 239, 269, 289, 348, 486, 556
AlwI GGATC 2 cut(s) 488, 583
Ama87I CYCGRG 1 cut(s) 361
Aor13HI TCCGGA 1 cut(s) 613
Aor51HI AGCGCT 1 cut(s) 630
AoxI GGCC 2 cut(s) 375, 679
ApeKI GCWGC 8 cut(s) 35, 195, 266, 395, 526, 556, 570, 687
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 7 cut(s) 7, 434, 446, 448, 534, 631, 674
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 4 cut(s) 49, 130, 617, 670
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 418
BbvI GCAGC 8 cut(s) 22, 182, 278, 407, 513, 543, 557, 699
BccI CCATC 1 cut(s) 92
BceAI ACGGC 3 cut(s) 281, 438, 666
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 1 cut(s) 131
BfoI RGCGCY 2 cut(s) 8, 632
BfuAI ACCTGC 1 cut(s) 499
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 6, 220
BmrFI CCNGG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 549
BsaHI GRCGYC 2 cut(s) 5, 386
BsaJI CCNNGG 4 cut(s) 81, 222, 322, 408
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 316
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 4 cut(s) 81, 222, 322, 408
BseGI GGATG 2 cut(s) 100, 258
BseLI CCNNNNNNNGG 2 cut(s) 83, 316
BsePI GCGCGC 1 cut(s) 444
BseRI GAGGAG 4 cut(s) 41, 44, 242, 668
BseXI GCAGC 8 cut(s) 22, 182, 278, 407, 513, 543, 557, 699
BseYI CCCAGC 1 cut(s) 476
BsgI GTGCAG 2 cut(s) 181, 320
Bsh1236I CGCG 3 cut(s) 434, 446, 448
BshFI GGCC 2 cut(s) 377, 681
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 2 cut(s) 177, 614
BslI CCNNNNNNNGG 2 cut(s) 83, 316
BsnI GGCC 2 cut(s) 377, 681
BsoBI CYCGRG 1 cut(s) 361
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 4 cut(s) 122, 160, 480, 588
BspACI CCGC 7 cut(s) 74, 310, 327, 330, 434, 474, 529
BspANI GGCC 2 cut(s) 377, 681
BspEI TCCGGA 1 cut(s) 613
BspFNI CGCG 3 cut(s) 434, 446, 448
BspLI GGNNCC 2 cut(s) 6, 220
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 2 cut(s) 488, 583
BspQI GCTCTTC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 81, 222, 322, 408
BssHII GCGCGC 1 cut(s) 444
BssMI GATC 4 cut(s) 122, 160, 480, 588
BssNI GRCGYC 2 cut(s) 5, 386
BssSI CACGAG 1 cut(s) 418
BssT1I CCWWGG 2 cut(s) 81, 322
Bst2BI CACGAG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 3 cut(s) 61, 611, 639
Bst6I CTCTTC 1 cut(s) 276
BstACI GRCGYC 2 cut(s) 5, 386
BstC8I GCNNGC 3 cut(s) 213, 241, 446
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 2 cut(s) 100, 258
BstFNI CGCG 3 cut(s) 434, 446, 448
BstH2I RGCGCY 2 cut(s) 8, 632
BstHHI GCGC 7 cut(s) 7, 434, 446, 448, 534, 631, 674
BstKTI GATC 4 cut(s) 125, 163, 483, 591
BstMBI GATC 4 cut(s) 122, 160, 480, 588
BstMWI GCNNNNNNNGC 8 cut(s) 41, 73, 266, 429, 443, 450, 678, 687
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstUI CGCG 3 cut(s) 434, 446, 448
BstV1I GCAGC 8 cut(s) 22, 182, 278, 407, 513, 543, 557, 699
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BsuRI GGCC 2 cut(s) 377, 681
BtgZI GCGATG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 405
BtsCI GGATG 2 cut(s) 100, 258
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 3 cut(s) 213, 241, 446
CfoI GCGC 7 cut(s) 7, 434, 446, 448, 534, 631, 674
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 147
CviAII CATG 3 cut(s) 15, 379, 711
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 492
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 124, 162, 482, 590
DpnII GATC 4 cut(s) 122, 160, 480, 588
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 81, 322
Eco47I GGWCC 1 cut(s) 319
Eco47III AGCGCT 1 cut(s) 630
Eco57I CTGAAG 2 cut(s) 572, 600
Eco88I CYCGRG 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 2 cut(s) 81, 322
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 81, 322
FaeI CATG 3 cut(s) 18, 382, 714
FaiI YATR 5 cut(s) 16, 380, 524, 696, 712
FatI CATG 3 cut(s) 14, 378, 710
FokI GGATG 2 cut(s) 107, 265
FspBI CTAG 1 cut(s) 131
GlaI GCGC 7 cut(s) 6, 433, 445, 447, 533, 630, 673
GsaI CCCAGC 1 cut(s) 480
HaeII RGCGCY 2 cut(s) 8, 632
HaeIII GGCC 2 cut(s) 377, 681
HapII CCGG 2 cut(s) 177, 614
HhaI GCGC 7 cut(s) 7, 434, 446, 448, 534, 631, 674
Hin1I GRCGYC 2 cut(s) 5, 386
Hin1II CATG 3 cut(s) 18, 382, 714
Hin6I GCGC 7 cut(s) 5, 432, 444, 446, 532, 629, 672
HinP1I GCGC 7 cut(s) 5, 432, 444, 446, 532, 629, 672
HinfI GANTC 5 cut(s) 107, 182, 232, 413, 598
HpaII CCGG 2 cut(s) 177, 614
HphI GGTGA 4 cut(s) 49, 130, 617, 670
Hpy188I TCNGA 7 cut(s) 127, 165, 412, 552, 580, 597, 635
Hpy188III TCNNGA 5 cut(s) 156, 250, 278, 586, 614
Hpy99I CGWCG 3 cut(s) 388, 391, 687
HpyAV CCTTC 3 cut(s) 87, 310, 364
HpyCH4III ACNGT 3 cut(s) 61, 611, 639
HpyCH4IV ACGT 2 cut(s) 386, 404
HpyCH4V TGCA 4 cut(s) 198, 266, 301, 395
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 73, 266, 429, 443, 450, 678, 687
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 2 cut(s) 386, 404
Hsp92I GRCGYC 2 cut(s) 5, 386
Hsp92II CATG 3 cut(s) 18, 382, 714
HspAI GCGC 7 cut(s) 5, 432, 444, 446, 532, 629, 672
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 613
Kzo9I GATC 4 cut(s) 122, 160, 480, 588
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 3 cut(s) 54, 127, 636
Lsp1109I GCAGC 8 cut(s) 22, 182, 278, 407, 513, 543, 557, 699
MaeI CTAG 1 cut(s) 131
MaeII ACGT 2 cut(s) 386, 404
MaeIII GTNAC 3 cut(s) 61, 455, 605
MalI GATC 4 cut(s) 124, 162, 482, 590
MbiI CCGCTC 1 cut(s) 312
MboI GATC 4 cut(s) 122, 160, 480, 588
MboII GAAGA 4 cut(s) 263, 508, 511, 514
MflI RGATCY 1 cut(s) 588
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 1 cut(s) 338
MluNI TGGCCA 1 cut(s) 377
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 4 cut(s) 116, 176, 422, 592
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 9 cut(s) 62, 65, 220, 409, 418, 427, 646, 649, 671
Mox20I TGGCCA 1 cut(s) 377
MroI TCCGGA 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 546
MscI TGGCCA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 3 cut(s) 348, 476, 486
MspI CCGG 2 cut(s) 177, 614
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 3 cut(s) 434, 446, 448
MwoI GCNNNNNNNGC 8 cut(s) 41, 73, 266, 429, 443, 450, 678, 687
NarI GGCGCC 1 cut(s) 5
NdeII GATC 4 cut(s) 122, 160, 480, 588
NlaIII CATG 3 cut(s) 18, 382, 714
NlaIV GGNNCC 2 cut(s) 6, 220
NmuCI GTSAC 2 cut(s) 61, 605
PaqCI CACCTGC 1 cut(s) 499
PauI GCGCGC 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 385
PleI GAGTC 4 cut(s) 115, 176, 421, 592
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 4 cut(s) 115, 176, 421, 592
Psp6I CCWGG 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 6, 220
PspPI GGNCC 1 cut(s) 319
PsuI RGATCY 1 cut(s) 588
PsyI GACNNNGTC 1 cut(s) 385
PteI GCGCGC 1 cut(s) 444
PvuII CAGCTG 2 cut(s) 348, 486
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 276
Sau3AI GATC 4 cut(s) 122, 160, 480, 588
Sau96I GGNCC 1 cut(s) 319
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 4 cut(s) 116, 176, 422, 592
ScrFI CCNGG 1 cut(s) 223
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 1 cut(s) 338
SsiI CCGC 7 cut(s) 74, 310, 327, 330, 434, 474, 529
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 2 cut(s) 81, 322
TaaI ACNGT 3 cut(s) 61, 611, 639
TaiI ACGT 2 cut(s) 389, 407
TaqI TCGA 2 cut(s) 314, 440
TasI AATT 1 cut(s) 338
TatI WGTACW 1 cut(s) 146
TauI GCSGC 5 cut(s) 330, 333, 437, 476, 532
TfiI GAWTC 1 cut(s) 232
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 2 cut(s) 61, 605
TseI GCWGC 8 cut(s) 35, 195, 266, 395, 526, 556, 570, 687
Tsp45I GTSAC 2 cut(s) 61, 605
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 1 cut(s) 131
ZraI GACGTC 1 cut(s) 387
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.