Rh3AG247200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010860
Physical Location & Seq
Reverse (-)
26426959 .. 26429798
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG247200.1

Sequence Viewer

Length: 444 bp
ATGGCGCCGTTTCCATGTTCAAGCGAACGCACTGCTGCTTCGGCTCTGCTCCTCCTCACTGTCACGCCACCACCGCCTTCCAAGGGCTGTTTGGATGATGGCGATGAGTCATCGGTGGTGAGATCGGAGCTAGGAAAGAGCAAGAGTACTATTTCCAGAGATCAGAGCTTTGTTTCCGGCGACTCCAAATCCTGCTGCACTTCGTCCTTGCTTGCTGGTTCCAGGGAGGAGATTCAAGCTCGCACAATCAGGATGATTGCTTTTGCAGCTCTTCATCGTGATGTGAAGCTCAAAGTAAGCCTTCGCTCTCCTTTTCTCTTCACTTCAAATTTTTGGCTAAGCTGTGCAAATGTGATTGAATCGGCGTTCTGTTTGGCTGAATTTGAGCCTAGCCGGAGCTCTGTTTGGCTTATTTTGTGCCTAATCGAAGTTGTATTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.91

Weight (kDa)

6.56

Isoelectric Point (pI)

73.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57440 AT3G57440
fragaria_vesca FvH4_6g23771 FvH4_6g23771
malus_domestica MD12G1073500.v1.1 MD14G1067100.v1.1
prunus_persica Prupe.7G061400_v2.0.a1
pyrus_communis pycom14g05020
rosa_chinensis RchiOBHm_Chr3g0482221
rosa_laevigata RLG00000023361
rosa_multiflora Rmu_sc0017838.1_g000001
rosa_roxburghii Rroxscaffold_6G00399440 Rroxscaffold_6G00399480 Rroxscaffold_6G00399960
rosa_rugosa Rorug03G0195700
rosa_samantha Rh3AG247200 Rh3BG281800 Rh3CG277800 Rh3DG274400
rosa_wichuraiana Rw3G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 328, 380
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 4 cut(s) 21, 236, 327, 359
AjnI CCWGG 1 cut(s) 221
AjuI GAANNNNNNNTTGG 1 cut(s) 420
AluBI AGCT 7 cut(s) 130, 168, 239, 269, 289, 342, 399
AluI AGCT 7 cut(s) 130, 168, 239, 269, 289, 342, 399
Alw21I GWGCWC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 35, 195, 266
ApoI RAATTY 2 cut(s) 328, 380
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 3 cut(s) 22, 182, 278
BccI CCATC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 2 cut(s) 131, 390
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 36, 196, 267
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 3 cut(s) 37, 197, 268
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 6, 220
BmrFI CCNGG 1 cut(s) 223
Bpu1102I GCTNAGC 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 81, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 81, 222
BseGI GGATG 2 cut(s) 100, 258
BseLI CCNNNNNNNGG 1 cut(s) 83
BseRI GAGGAG 3 cut(s) 41, 44, 242
BseXI GCAGC 3 cut(s) 22, 182, 278
BsgI GTGCAG 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 401
BsiSI CCGG 2 cut(s) 177, 394
BslI CCNNNNNNNGG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 2 cut(s) 122, 160
Bsp1720I GCTNAGC 1 cut(s) 338
BspACI CCGC 1 cut(s) 74
BspLI GGNNCC 2 cut(s) 6, 220
BspQI GCTCTTC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 81, 222
BssMI GATC 2 cut(s) 122, 160
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 276, 323
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 213, 241
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 2 cut(s) 100, 258
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 125, 163
BstMBI GATC 2 cut(s) 122, 160
BstMWI GCNNNNNNNGC 3 cut(s) 41, 73, 266
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 22, 182, 278
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 100, 258
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 57
Cac8I GCNNGC 2 cut(s) 213, 241
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 15
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 338
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 124, 162
DpnII GATC 2 cut(s) 122, 160
Eam1104I CTCTTC 2 cut(s) 276, 323
EarI CTCTTC 2 cut(s) 276, 323
Ecl136II GAGCTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 401
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 18
FaiI YATR 1 cut(s) 16
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 1 cut(s) 14
Fnu4HI GCNGC 3 cut(s) 36, 196, 267
FokI GGATG 2 cut(s) 107, 265
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 3 cut(s) 36, 196, 267
FspBI CTAG 2 cut(s) 131, 390
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 36, 196, 267
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 177, 394
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 4 cut(s) 107, 182, 232, 359
HpaII CCGG 2 cut(s) 177, 394
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 127, 165
Hpy188III TCNNGA 3 cut(s) 156, 250, 278
HpyAV CCTTC 2 cut(s) 87, 311
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 198, 266, 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 73, 266
HpyF3I CTNAG 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 122, 160
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 3 cut(s) 54, 127, 396
LpnPI CCDG 8 cut(s) 169, 190, 201, 205, 208, 235, 235, 407
Lsp1109I GCAGC 3 cut(s) 22, 182, 278
MaeI CTAG 2 cut(s) 131, 390
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 124, 162
MboI GATC 2 cut(s) 122, 160
MboII GAAGA 2 cut(s) 263, 310
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 2 cut(s) 328, 380
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 116, 176
MnlI CCTC 3 cut(s) 62, 65, 220
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 2 cut(s) 177, 394
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 41, 73, 266
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 122, 160
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 2 cut(s) 6, 220
NmuCI GTSAC 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 232, 359
PkrI GCNGC 3 cut(s) 37, 197, 268
PleI GAGTC 2 cut(s) 115, 176
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 115, 176
Psp124BI GAGCTC 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 6, 220
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 276
SatI GCNGC 3 cut(s) 36, 196, 267
Sau3AI GATC 2 cut(s) 122, 160
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 2 cut(s) 116, 176
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 401
SetI ASST 7 cut(s) 132, 170, 241, 271, 291, 344, 401
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 328, 380
SsiI CCGC 1 cut(s) 74
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 131, 390
SstI GAGCTC 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 426
TasI AATT 2 cut(s) 328, 380
TatI WGTACW 1 cut(s) 146
TfiI GAWTC 2 cut(s) 232, 359
TscAI CASTG 2 cut(s) 37, 64
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 3 cut(s) 35, 195, 266
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 2 cut(s) 37, 64
XapI RAATTY 2 cut(s) 328, 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XspI CTAG 2 cut(s) 131, 390
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.