Prupe.7G061400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010860
Physical Location & Seq
Forward (+)
10045537 .. 10047976
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G061400.1

Sequence Viewer

Length: 723 bp
ATGGCTCCGTTTCCATCTCCACTCGAACGCGTAGTTGCTTCGGCTTTGCTAGTCCTGGCCACCACACCTCCGAAGCTCTGTTTGGACGACGATATCGAGTTGGTGAGGGAGCGAAGCAAGATAGAGAATTGCAGAGAGAGCTCGGTTTCTGGGGATTCCAATAAGTCCTTCTCGTCGTTGATCACCACATGCGAGGTTTCCACGGAGGAGATTCGAGCTCGTAAGATCAGAATCGTAGCGCTTGCTGCTCTTCGTCATGAGATGAAGCTCAAGGGTGTGCGGAGAAGTCGCTCCAAGACGCAAACAAGCTGGAAGACCGTCTCTGGATCGTCGGAGACGGCGTCCTTTCGATCTGAGACTACCACGGAGTCTTCGTGCGTGTCCACCAGCTCCTGTGCGGCTTCAAGCGCGCGAAGCCAAAGCAGAAGCCGACACCCGTCATGGTCAGCCTGGAATTATCGTGGTGCCAGTAAGCTTTCGATGGTAAGGGAGGAGCCGAGGAAGAGGAAGCGGCTGAGCTTCTCGGCTCACATGCGCCGCAAAGCCGAGGAAATTCTGAAGCTCTTGTCCGGTGGCTGCTGCTTCTCTGAAGTTAAGATTCGTCAGACCATCGGTGACAGTCCTGACACTAGCAAAGCACTCAGAATGTTGTTGAAGCTTGAGAAGGTCAAAAGGTCAGGCATTGGAGGCCGTTACAACCCTTATATTTACACGATAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.71

Weight (kDa)

10.1

Isoelectric Point (pI)

68.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57440 AT3G57440
fragaria_vesca FvH4_6g23771 FvH4_6g23771
malus_domestica MD12G1073500.v1.1 MD14G1067100.v1.1
prunus_persica Prupe.7G061400_v2.0.a1
pyrus_communis pycom14g05020
rosa_chinensis RchiOBHm_Chr3g0482221
rosa_laevigata RLG00000023361
rosa_multiflora Rmu_sc0017838.1_g000001
rosa_roxburghii Rroxscaffold_6G00399440 Rroxscaffold_6G00399480 Rroxscaffold_6G00399960
rosa_rugosa Rorug03G0195700
rosa_samantha Rh3AG247200 Rh3BG281800 Rh3CG277800 Rh3DG274400
rosa_wichuraiana Rw3G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 464
AccII CGCG 3 cut(s) 30, 410, 412
AciI CCGC 4 cut(s) 280, 398, 511, 538
AclWI GGATC 1 cut(s) 334
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 2 cut(s) 578, 609
AcyI GRCGYC 1 cut(s) 341
AfeI AGCGCT 1 cut(s) 240
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 405, 655
AjnI CCWGG 2 cut(s) 54, 449
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 152, 184
Alw21I GWGCWC 2 cut(s) 143, 220
Alw26I GTCTC 3 cut(s) 325, 329, 350
AlwI GGATC 1 cut(s) 334
AlwNI CAGNNNCTG 1 cut(s) 393
Aor51HI AGCGCT 1 cut(s) 240
AoxI GGCC 2 cut(s) 57, 688
ApeKI GCWGC 3 cut(s) 245, 576, 579
ApoI RAATTY 1 cut(s) 552
AspLEI GCGC 4 cut(s) 241, 410, 412, 537
AsuHPI GGTGA 3 cut(s) 115, 175, 626
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 2 cut(s) 143, 220
BbsI GAAGAC 2 cut(s) 320, 363
Bbv12I GWGCWC 2 cut(s) 143, 220
BbvI GCAGC 3 cut(s) 232, 563, 566
BccI CCATC 3 cut(s) 22, 475, 617
BceAI ACGGC 2 cut(s) 354, 675
BciT130I CCWGG 2 cut(s) 56, 451
BclI TGATCA 1 cut(s) 180
BcoDI GTCTC 3 cut(s) 325, 329, 350
BfaI CTAG 2 cut(s) 50, 630
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 6 cut(s) 246, 399, 512, 538, 577, 580
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 6 cut(s) 247, 400, 513, 539, 578, 581
Bme1390I CCNGG 2 cut(s) 56, 451
BmiI GGNNCC 3 cut(s) 6, 466, 495
BmrFI CCNGG 2 cut(s) 56, 451
BoxI GACNNNNGTC 1 cut(s) 436
BpiI GAAGAC 2 cut(s) 320, 363
Bpu1102I GCTNAGC 1 cut(s) 515
BpuEI CTTGAG 2 cut(s) 254, 680
BsaBI GATNNNNATC 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 4 cut(s) 201, 363, 497, 546
BsaWI WCCGGW 1 cut(s) 569
BsaXI ACNNNNNCTCC 6 cut(s) 52, 82, 326, 356, 359, 389
Bse1I ACTGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 2 cut(s) 56, 451
BseDI CCNNGG 4 cut(s) 201, 363, 497, 546
BseJI GATNNNNATC 1 cut(s) 230
BseMII CTCAG 3 cut(s) 345, 506, 655
BseNI ACTGG 1 cut(s) 468
BsePI GCGCGC 1 cut(s) 408
BseRI GAGGAG 2 cut(s) 221, 506
BseXI GCAGC 3 cut(s) 232, 563, 566
Bsh1236I CGCG 3 cut(s) 30, 410, 412
BshFI GGCC 2 cut(s) 59, 690
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 2 cut(s) 143, 220
BsiSI CCGG 1 cut(s) 570
BsmAI GTCTC 3 cut(s) 325, 329, 350
BsmBI CGTCTC 2 cut(s) 325, 329
BsnI GGCC 2 cut(s) 59, 690
Bsp1286I GDGCHC 2 cut(s) 143, 220
Bsp143I GATC 4 cut(s) 180, 225, 326, 350
Bsp1720I GCTNAGC 1 cut(s) 515
BspACI CCGC 4 cut(s) 280, 398, 511, 538
BspANI GGCC 2 cut(s) 59, 690
BspCNI CTCAG 3 cut(s) 346, 507, 654
BspFNI CGCG 3 cut(s) 30, 410, 412
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 6, 466, 495
BspPI GGATC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 464
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 4 cut(s) 201, 363, 497, 546
BssHII GCGCGC 1 cut(s) 408
BssMI GATC 4 cut(s) 180, 225, 326, 350
BssNI GRCGYC 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 56, 451
Bst4CI ACNGT 2 cut(s) 319, 620
Bst6I CTCTTC 2 cut(s) 255, 497
BstACI GRCGYC 1 cut(s) 341
BstC8I GCNNGC 2 cut(s) 243, 410
BstDEI CTNAG 3 cut(s) 354, 515, 641
BstDSI CCRYGG 2 cut(s) 201, 363
BstFNI CGCG 3 cut(s) 30, 410, 412
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 4 cut(s) 241, 410, 412, 537
BstKTI GATC 4 cut(s) 183, 228, 329, 353
BstMAI GTCTC 3 cut(s) 325, 329, 350
BstMBI GATC 4 cut(s) 180, 225, 326, 350
BstMWI GCNNNNNNNGC 5 cut(s) 138, 245, 407, 414, 687
BstNI CCWGG 2 cut(s) 56, 451
BstNSI RCATGY 2 cut(s) 192, 535
BstPAI GACNNNNGTC 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 54, 449
BstUI CGCG 3 cut(s) 30, 410, 412
BstV1I GCAGC 3 cut(s) 232, 563, 566
BstV2I GAAGAC 2 cut(s) 320, 363
BsuRI GGCC 2 cut(s) 59, 690
BtgI CCRYGG 2 cut(s) 201, 363
Cac8I GCNNGC 2 cut(s) 243, 410
CaiI CAGNNNCTG 1 cut(s) 393
CciI TCATGA 1 cut(s) 256
CfoI GCGC 4 cut(s) 241, 410, 412, 537
CseI GACGC 2 cut(s) 307, 330
CviAII CATG 4 cut(s) 189, 257, 441, 532
DdeI CTNAG 3 cut(s) 354, 515, 641
DpnI GATC 4 cut(s) 182, 227, 328, 352
DpnII GATC 4 cut(s) 180, 225, 326, 350
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 255, 497
EarI CTCTTC 2 cut(s) 255, 497
Ecl136II GAGCTC 2 cut(s) 141, 218
Eco24I GRGCYC 2 cut(s) 143, 220
Eco32I GATATC 1 cut(s) 94
Eco47III AGCGCT 1 cut(s) 240
Eco53kI GAGCTC 2 cut(s) 141, 218
Eco57I CTGAAG 2 cut(s) 578, 609
EcoICRI GAGCTC 2 cut(s) 141, 218
EcoRII CCWGG 2 cut(s) 54, 449
EcoRV GATATC 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 143, 220
Esp3I CGTCTC 2 cut(s) 325, 329
FaeI CATG 4 cut(s) 192, 260, 444, 535
FaiI YATR 5 cut(s) 190, 258, 442, 533, 705
FatI CATG 4 cut(s) 188, 256, 440, 531
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 6 cut(s) 246, 399, 512, 538, 577, 580
FriOI GRGCYC 2 cut(s) 143, 220
Fsp4HI GCNGC 6 cut(s) 246, 399, 512, 538, 577, 580
FspBI CTAG 2 cut(s) 50, 630
GlaI GCGC 4 cut(s) 240, 409, 411, 536
GluI GCNGC 6 cut(s) 246, 399, 512, 538, 577, 580
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 2 cut(s) 59, 690
HapII CCGG 1 cut(s) 570
HgaI GACGC 2 cut(s) 307, 330
HhaI GCGC 4 cut(s) 241, 410, 412, 537
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 4 cut(s) 192, 260, 444, 535
Hin6I GCGC 4 cut(s) 239, 408, 410, 535
HinP1I GCGC 4 cut(s) 239, 408, 410, 535
HindIII AAGCTT 2 cut(s) 473, 656
HinfI GANTC 5 cut(s) 155, 211, 231, 368, 598
HpaII CCGG 1 cut(s) 570
HphI GGTGA 3 cut(s) 115, 175, 626
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 8 cut(s) 72, 230, 334, 355, 558, 589, 606, 644
Hpy188III TCNNGA 3 cut(s) 257, 324, 623
Hpy8I GTNNAC 1 cut(s) 384
Hpy99I CGWCG 3 cut(s) 92, 178, 334
HpyAV CCTTC 2 cut(s) 178, 658
HpyCH4III ACNGT 2 cut(s) 319, 620
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 5 cut(s) 138, 245, 407, 414, 687
HpyF3I CTNAG 3 cut(s) 354, 515, 641
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 4 cut(s) 192, 260, 444, 535
HspAI GCGC 4 cut(s) 239, 408, 410, 535
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 180, 225, 326, 350
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 5 cut(s) 10, 109, 296, 395, 493
Lsp1109I GCAGC 3 cut(s) 232, 563, 566
MaeI CTAG 2 cut(s) 50, 630
MaeIII GTNAC 2 cut(s) 614, 692
MalI GATC 4 cut(s) 182, 227, 328, 352
MboI GATC 4 cut(s) 180, 225, 326, 350
MboII GAAGA 4 cut(s) 242, 325, 363, 514
MhlI GDGCHC 2 cut(s) 143, 220
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 3 cut(s) 127, 454, 552
MluI ACGCGT 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 9 cut(s) 78, 99, 187, 199, 484, 492, 498, 541, 680
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 1 cut(s) 570
MspR9I CCNGG 2 cut(s) 56, 451
MvaI CCWGG 2 cut(s) 56, 451
MvnI CGCG 3 cut(s) 30, 410, 412
MwoI GCNNNNNNNGC 5 cut(s) 138, 245, 407, 414, 687
NdeII GATC 4 cut(s) 180, 225, 326, 350
NlaIII CATG 4 cut(s) 192, 260, 444, 535
NlaIV GGNNCC 3 cut(s) 6, 466, 495
NmeAIII GCCGAG 3 cut(s) 503, 522, 571
NmuCI GTSAC 1 cut(s) 614
NspI RCATGY 2 cut(s) 192, 535
PagI TCATGA 1 cut(s) 256
PauI GCGCGC 1 cut(s) 408
PciSI GCTCTTC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 3 cut(s) 93, 338, 371
PfeI GAWTC 4 cut(s) 155, 211, 231, 598
PflFI GACNNNGTC 1 cut(s) 340
PkrI GCNGC 6 cut(s) 247, 400, 513, 539, 578, 581
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 436
Psp124BI GAGCTC 2 cut(s) 143, 220
Psp6I CCWGG 2 cut(s) 54, 449
PspGI CCWGG 2 cut(s) 54, 449
PspN4I GGNNCC 3 cut(s) 6, 466, 495
PstNI CAGNNNCTG 1 cut(s) 393
PsyI GACNNNGTC 1 cut(s) 340
PteI GCGCGC 1 cut(s) 408
SacI GAGCTC 2 cut(s) 143, 220
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 6 cut(s) 246, 399, 512, 538, 577, 580
Sau3AI GATC 4 cut(s) 180, 225, 326, 350
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 2 cut(s) 56, 451
SduI GDGCHC 2 cut(s) 143, 220
SmlI CTYRAG 2 cut(s) 269, 659
SmoI CTYRAG 2 cut(s) 269, 659
Sse9I AATT 3 cut(s) 127, 454, 552
SsiI CCGC 4 cut(s) 280, 398, 511, 538
SspMI CTAG 2 cut(s) 50, 630
SstI GAGCTC 2 cut(s) 143, 220
StyD4I CCNGG 2 cut(s) 54, 449
TaaI ACNGT 2 cut(s) 319, 620
TaqI TCGA 5 cut(s) 24, 96, 214, 349, 479
TasI AATT 3 cut(s) 127, 454, 552
TauI GCSGC 3 cut(s) 401, 514, 540
TfiI GAWTC 4 cut(s) 155, 211, 231, 598
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 3 cut(s) 245, 576, 579
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 2 cut(s) 218, 380
Tth111I GACNNNGTC 1 cut(s) 340
XapI RAATTY 1 cut(s) 552
XceI RCATGY 2 cut(s) 192, 535
XspI CTAG 2 cut(s) 50, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.