RLG00000023361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010860
Physical Location & Seq
Forward (+)
22524997 .. 22526767
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023361

Sequence Viewer

Length: 717 bp
ATGGCGCCGTTTCCATGTTCAAGCGAACGCACTGCTGCTTCGGCTCTGCTCCTCCTCACCGTCACACCACCACCGCCTTCCAAGGTCTGTTTGGATGATGGCGATGAGTCATCGGTGGTGAGATCGGAGCTAGGAAAGAGCGAGAGTACTATTTCCAGAGATCAGAGCTTTGTTTCCGGCGACTCCAAATCCTGCTGCACTTCGTCCTTGCTTGCTGGTTCCAGGGAGCAGATTCAAGCTCGCACAATCAGGATGATTGCTCTTGCAGCTCTTCATCGAGATGTGAAGCTCAAAGCCGTGCAGAAAAACCGCTCGAAGATCCAAGGCGGCGGCGTGAAATTCAACAGCTGGAAAACTCGCTCGGGCGTGAAGGTGGCCATGACGAAGTCGTTTGCGGCCTCCACGTCCTCGGAGTCCTCGTGCCTGTCCAGCGCCGCTTCGAGCGCGCGAAGCCGTTACTACGAGCCGAAAACCGCTGGGAGCAGCTGGATTAAGAAGAAGAAGAAGAAGCAGGTGGGGTCGGTTATGCTGCGGCGCAAAGCCGAAGCCATTCTGAAGCTGCTCTCTCAAGGCTGCTACTCTGAAGTCAAGATCCGTCAGACTCTCGGTGACAGTCCGGACACCAGCAAAGCGCTCCGACTGTTGTTGAAGTTTGAGGAGGTGAAAAGGACAGGCGCAGGAGGCCGTCGCAGCCCTTATATTTACACGATAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

25.71

Weight (kDa)

10.1

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_74 PF25370 176 - 214 8.8e-23 HTH three-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57440 AT3G57440
fragaria_vesca FvH4_6g23771 FvH4_6g23771
malus_domestica MD12G1073500.v1.1 MD14G1067100.v1.1
prunus_persica Prupe.7G061400_v2.0.a1
pyrus_communis pycom14g05020
rosa_chinensis RchiOBHm_Chr3g0482221
rosa_laevigata RLG00000023361
rosa_multiflora Rmu_sc0017838.1_g000001
rosa_roxburghii Rroxscaffold_6G00399440 Rroxscaffold_6G00399480 Rroxscaffold_6G00399960
rosa_rugosa Rorug03G0195700
rosa_samantha Rh3AG247200 Rh3BG281800 Rh3CG277800 Rh3DG274400
rosa_wichuraiana Rw3G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 312
AccII CGCG 2 cut(s) 446, 448
AccIII TCCGGA 1 cut(s) 616
AciI CCGC 8 cut(s) 74, 310, 327, 330, 395, 435, 474, 532
AclWI GGATC 2 cut(s) 313, 586
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 575, 603
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 148
AfeI AGCGCT 1 cut(s) 633
AgsI TTSAA 4 cut(s) 21, 236, 343, 649
AjiI CACGTC 1 cut(s) 405
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 8 cut(s) 130, 168, 239, 269, 289, 348, 486, 559
AluI AGCT 8 cut(s) 130, 168, 239, 269, 289, 348, 486, 559
AlwI GGATC 2 cut(s) 313, 586
Ama87I CYCGRG 1 cut(s) 361
Aor13HI TCCGGA 1 cut(s) 616
Aor51HI AGCGCT 1 cut(s) 633
AoxI GGCC 3 cut(s) 375, 396, 682
ApeKI GCWGC 8 cut(s) 35, 195, 266, 483, 529, 559, 573, 690
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 7 cut(s) 7, 434, 446, 448, 537, 634, 677
AsuHPI GGTGA 4 cut(s) 49, 130, 620, 673
AvaI CYCGRG 1 cut(s) 361
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 418
BbvI GCAGC 8 cut(s) 22, 182, 278, 495, 516, 546, 560, 702
BccI CCATC 1 cut(s) 92
BceAI ACGGC 3 cut(s) 281, 438, 669
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 1 cut(s) 131
BfoI RGCGCY 3 cut(s) 8, 435, 635
BfuAI ACCTGC 1 cut(s) 502
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 405
BmiI GGNNCC 2 cut(s) 6, 220
BmrFI CCNGG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 81, 222, 322, 408
BsaWI WCCGGW 1 cut(s) 616
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
BseAI TCCGGA 1 cut(s) 616
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 4 cut(s) 81, 222, 322, 408
BseGI GGATG 2 cut(s) 100, 258
BsePI GCGCGC 1 cut(s) 444
BseRI GAGGAG 3 cut(s) 41, 44, 671
BseXI GCAGC 8 cut(s) 22, 182, 278, 495, 516, 546, 560, 702
BseYI CCCAGC 1 cut(s) 476
BsgI GTGCAG 2 cut(s) 181, 320
Bsh1236I CGCG 2 cut(s) 446, 448
BshFI GGCC 3 cut(s) 377, 398, 684
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 2 cut(s) 177, 617
BsnI GGCC 3 cut(s) 377, 398, 684
BsoBI CYCGRG 1 cut(s) 361
Bsp13I TCCGGA 1 cut(s) 616
Bsp143I GATC 4 cut(s) 122, 160, 318, 591
BspACI CCGC 8 cut(s) 74, 310, 327, 330, 395, 435, 474, 532
BspANI GGCC 3 cut(s) 377, 398, 684
BspEI TCCGGA 1 cut(s) 616
BspFNI CGCG 2 cut(s) 446, 448
BspLI GGNNCC 2 cut(s) 6, 220
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 2 cut(s) 313, 586
BspQI GCTCTTC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 81, 222, 322, 408
BssHII GCGCGC 1 cut(s) 444
BssMI GATC 4 cut(s) 122, 160, 318, 591
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 418
BssT1I CCWWGG 2 cut(s) 81, 322
Bst2BI CACGAG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 3 cut(s) 61, 614, 642
Bst6I CTCTTC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 213, 241, 446
BstF5I GGATG 2 cut(s) 100, 258
BstFNI CGCG 2 cut(s) 446, 448
BstH2I RGCGCY 3 cut(s) 8, 435, 635
BstHHI GCGC 7 cut(s) 7, 434, 446, 448, 537, 634, 677
BstKTI GATC 4 cut(s) 125, 163, 321, 594
BstMBI GATC 4 cut(s) 122, 160, 318, 591
BstMWI GCNNNNNNNGC 7 cut(s) 41, 266, 429, 443, 450, 681, 690
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstUI CGCG 2 cut(s) 446, 448
BstV1I GCAGC 8 cut(s) 22, 182, 278, 495, 516, 546, 560, 702
BstX2I RGATCY 2 cut(s) 318, 591
BstYI RGATCY 2 cut(s) 318, 591
BsuRI GGCC 3 cut(s) 377, 398, 684
BtgZI GCGATG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 405
BtsCI GGATG 2 cut(s) 100, 258
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 3 cut(s) 213, 241, 446
CfoI GCGC 7 cut(s) 7, 434, 446, 448, 537, 634, 677
Csp6I GTAC 1 cut(s) 147
CviAII CATG 3 cut(s) 15, 379, 714
CviQI GTAC 1 cut(s) 147
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 124, 162, 320, 593
DpnII GATC 4 cut(s) 122, 160, 318, 591
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 81, 322
Eco47III AGCGCT 1 cut(s) 633
Eco57I CTGAAG 2 cut(s) 575, 603
Eco88I CYCGRG 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 2 cut(s) 81, 322
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 81, 322
FaeI CATG 3 cut(s) 18, 382, 717
FaiI YATR 5 cut(s) 16, 380, 527, 699, 715
FatI CATG 3 cut(s) 14, 378, 713
FokI GGATG 2 cut(s) 107, 265
FspBI CTAG 1 cut(s) 131
GlaI GCGC 7 cut(s) 6, 433, 445, 447, 536, 633, 676
GsaI CCCAGC 1 cut(s) 480
HaeII RGCGCY 3 cut(s) 8, 435, 635
HaeIII GGCC 3 cut(s) 377, 398, 684
HapII CCGG 2 cut(s) 177, 617
HhaI GCGC 7 cut(s) 7, 434, 446, 448, 537, 634, 677
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 18, 382, 717
Hin6I GCGC 7 cut(s) 5, 432, 444, 446, 535, 632, 675
HinP1I GCGC 7 cut(s) 5, 432, 444, 446, 535, 632, 675
HinfI GANTC 5 cut(s) 107, 182, 232, 413, 601
HpaII CCGG 2 cut(s) 177, 617
HphI GGTGA 4 cut(s) 49, 130, 620, 673
Hpy188I TCNGA 7 cut(s) 127, 165, 412, 555, 583, 600, 638
Hpy188III TCNNGA 5 cut(s) 156, 250, 278, 589, 617
Hpy99I CGWCG 1 cut(s) 690
HpyAV CCTTC 2 cut(s) 87, 364
HpyCH4III ACNGT 3 cut(s) 61, 614, 642
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 3 cut(s) 198, 266, 301
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 266, 429, 443, 450, 681, 690
HpySE526I ACGT 1 cut(s) 404
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 18, 382, 717
HspAI GCGC 7 cut(s) 5, 432, 444, 446, 535, 632, 675
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 616
Kzo9I GATC 4 cut(s) 122, 160, 318, 591
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 5 cut(s) 54, 127, 226, 480, 639
Lsp1109I GCAGC 8 cut(s) 22, 182, 278, 495, 516, 546, 560, 702
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 3 cut(s) 61, 455, 608
MalI GATC 4 cut(s) 124, 162, 320, 593
MbiI CCGCTC 1 cut(s) 312
MboI GATC 4 cut(s) 122, 160, 318, 591
MboII GAAGA 6 cut(s) 263, 328, 508, 511, 514, 517
MflI RGATCY 2 cut(s) 318, 591
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 1 cut(s) 338
MluNI TGGCCA 1 cut(s) 377
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 4 cut(s) 116, 176, 422, 595
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 8 cut(s) 62, 65, 409, 418, 427, 649, 652, 674
Mox20I TGGCCA 1 cut(s) 377
MroI TCCGGA 1 cut(s) 616
MroXI GAANNNNTTC 1 cut(s) 549
MscI TGGCCA 1 cut(s) 377
MseI TTAA 1 cut(s) 492
MslI CAYNNNNRTG 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 3 cut(s) 348, 476, 486
MspI CCGG 2 cut(s) 177, 617
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 2 cut(s) 446, 448
MwoI GCNNNNNNNGC 7 cut(s) 41, 266, 429, 443, 450, 681, 690
NarI GGCGCC 1 cut(s) 5
NdeII GATC 4 cut(s) 122, 160, 318, 591
NlaIII CATG 3 cut(s) 18, 382, 717
NlaIV GGNNCC 2 cut(s) 6, 220
NmuCI GTSAC 2 cut(s) 61, 608
PaqCI CACCTGC 1 cut(s) 502
PauI GCGCGC 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 385
PleI GAGTC 4 cut(s) 115, 176, 421, 595
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 4 cut(s) 115, 176, 421, 595
Psp6I CCWGG 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 6, 220
PsuI RGATCY 2 cut(s) 318, 591
PsyI GACNNNGTC 1 cut(s) 385
PteI GCGCGC 1 cut(s) 444
PvuII CAGCTG 2 cut(s) 348, 486
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 492
Sau3AI GATC 4 cut(s) 122, 160, 318, 591
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 4 cut(s) 116, 176, 422, 595
ScrFI CCNGG 1 cut(s) 223
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 567
SmoI CTYRAG 1 cut(s) 567
Sse9I AATT 1 cut(s) 338
SsiI CCGC 8 cut(s) 74, 310, 327, 330, 395, 435, 474, 532
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 2 cut(s) 81, 322
TaaI ACNGT 3 cut(s) 61, 614, 642
TaiI ACGT 1 cut(s) 407
TaqI TCGA 3 cut(s) 277, 314, 440
TasI AATT 1 cut(s) 338
TatI WGTACW 1 cut(s) 146
TauI GCSGC 5 cut(s) 330, 333, 398, 437, 535
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 2 cut(s) 61, 608
TseI GCWGC 8 cut(s) 35, 195, 266, 483, 529, 559, 573, 690
Tsp45I GTSAC 2 cut(s) 61, 608
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 385
XapI RAATTY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.