FvH4_6g23771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010860
Physical Location & Seq
Reverse (-)
17869899 .. 17875624
5726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23771.t1

Sequence Viewer

Length: 768 bp
ATGGCGCCGTTTCCATGTTCAAGCGAACGCACAGCTGCTTCGGCTTTGCTCCTCCTCACCGTCACACCACCACCACCACAACCTCCCAAGGGCGGTTTTGATGACGGCGGTGAGTCATCGGTGGTGAGATCGGAGCTAGGAAAGAGCGAGATCACTAATTTCGGAGAACAGAGCTTTGTTTCTGGCGACTCCAAATCGTGCTGCACTTCCTTGCTCGCTAGATCCAGTGAGGAGACTCAAGCTCGCACAATCAGGATGATCACTCTTGCTGCTCTTCATCGTGATGTGAAGCTCAGAGCCGTGCAGAAAAACCGCTCCAAGATCCAAACCGGCGTGACATTCAACTCCTGGAGAACTCGCTCCGGCGTGAAGGTGGCCATGACGACGTCGTTTGCCTCCACTTCGTCGGAGTCCTCGTGCCTGTCCACCAGTTCCAGCGCGGCTTACTCTAGCGCGCGAAGCCGTCACTCCTACGAGCCGAAGCTAGCCGGGAGCTGGAGTAGGCTCGCGAGCATTGGTGAGCACACCAGGAAGATCAAGAAGCAGAAGAAGAAAACGAAGAAGGTCGGGTCCGCTAATATCCGACGCAAAGCTGACGCCATCCTGAAGCTGCTCTCTCAAGGCTGCCTCTCCGAAGTCAAGATCCGTCAGACTCTCGGTGACAGTCCCGACACTAGCAAAGCCCTCAGACTGTTGTTGAAATTTGAGGAGGTGAAAAGGACAGGCGCAGGAGGCCGTCGTAGTCCTTATATTTACACGATAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

27.59

Weight (kDa)

10.27

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_74 PF25370 191 - 231 5.9e-23 HTH three-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57440 AT3G57440
fragaria_vesca FvH4_6g23771 FvH4_6g23771
malus_domestica MD12G1073500.v1.1 MD14G1067100.v1.1
prunus_persica Prupe.7G061400_v2.0.a1
pyrus_communis pycom14g05020
rosa_chinensis RchiOBHm_Chr3g0482221
rosa_laevigata RLG00000023361
rosa_multiflora Rmu_sc0017838.1_g000001
rosa_roxburghii Rroxscaffold_6G00399440 Rroxscaffold_6G00399480 Rroxscaffold_6G00399960
rosa_rugosa Rorug03G0195700
rosa_samantha Rh3AG247200 Rh3BG281800 Rh3CG277800 Rh3DG274400
rosa_wichuraiana Rw3G022110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 315
AccII CGCG 4 cut(s) 440, 455, 457, 509
AciI CCGC 5 cut(s) 93, 108, 313, 440, 573
AclWI GGATC 3 cut(s) 216, 316, 637
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 3 cut(s) 5, 386, 597
AfiI CCNNNNNNNGG 3 cut(s) 89, 92, 495
AgsI TTSAA 3 cut(s) 21, 343, 700
AjnI CCWGG 2 cut(s) 347, 527
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 3 cut(s) 216, 316, 637
AoxI GGCC 2 cut(s) 375, 733
ApeKI GCWGC 5 cut(s) 35, 201, 269, 610, 624
ApoI RAATTY 1 cut(s) 701
AspLEI GCGC 5 cut(s) 7, 440, 455, 457, 728
AspS9I GGNCC 1 cut(s) 570
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 6 cut(s) 49, 122, 136, 530, 671, 724
AsuNHI GCTAGC 1 cut(s) 484
AvaII GGWCC 1 cut(s) 570
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 5 cut(s) 22, 188, 256, 597, 611
BccI CCATC 1 cut(s) 608
BceAI ACGGC 4 cut(s) 121, 284, 447, 720
BciT130I CCWGG 2 cut(s) 349, 529
BclI TGATCA 1 cut(s) 258
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 5 cut(s) 137, 219, 450, 485, 675
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 6 cut(s) 36, 202, 270, 441, 611, 625
BlsI GCNGC 6 cut(s) 37, 203, 271, 442, 612, 626
Bme1390I CCNGG 3 cut(s) 349, 490, 529
Bme18I GGWCC 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 2 cut(s) 6, 571
BmrFI CCNGG 3 cut(s) 349, 490, 529
BmtI GCTAGC 1 cut(s) 488
BpmI CTGGAG 2 cut(s) 370, 517
BpuEI CTTGAG 2 cut(s) 222, 603
BpuMI CCSGG 1 cut(s) 490
BsaHI GRCGYC 3 cut(s) 5, 386, 597
BsaJI CCNNGG 1 cut(s) 87
BsaXI ACNNNNNCTCC 4 cut(s) 401, 431, 484, 514
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 92, 495
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 225, 429
BseBI CCWGG 2 cut(s) 349, 529
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 261, 600
BseLI CCNNNNNNNGG 3 cut(s) 89, 92, 495
BseMII CTCAG 2 cut(s) 307, 700
BseNI ACTGG 2 cut(s) 225, 429
BsePI GCGCGC 1 cut(s) 453
BseRI GAGGAG 4 cut(s) 41, 44, 245, 722
BseXI GCAGC 5 cut(s) 22, 188, 256, 597, 611
BsgI GTGCAG 2 cut(s) 187, 323
Bsh1236I CGCG 4 cut(s) 440, 455, 457, 509
BshFI GGCC 2 cut(s) 377, 735
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 525
BsiSI CCGG 3 cut(s) 330, 363, 489
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 3 cut(s) 89, 92, 495
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 651
BsnI GGCC 2 cut(s) 377, 735
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 7 cut(s) 128, 150, 221, 258, 321, 534, 642
Bsp68I TCGCGA 1 cut(s) 509
BspACI CCGC 5 cut(s) 93, 108, 313, 440, 573
BspANI GGCC 2 cut(s) 377, 735
BspCNI CTCAG 2 cut(s) 306, 699
BspFNI CGCG 4 cut(s) 440, 455, 457, 509
BspLI GGNNCC 2 cut(s) 6, 571
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 3 cut(s) 216, 316, 637
BspQI GCTCTTC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 2 cut(s) 225, 429
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 87
BssHII GCGCGC 1 cut(s) 453
BssMI GATC 7 cut(s) 128, 150, 221, 258, 321, 534, 642
BssNI GRCGYC 3 cut(s) 5, 386, 597
BssSI CACGAG 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 415
Bst2UI CCWGG 2 cut(s) 349, 529
Bst4CI ACNGT 3 cut(s) 61, 665, 693
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 3 cut(s) 5, 386, 597
BstC8I GCNNGC 6 cut(s) 216, 244, 455, 486, 507, 511
BstDEI CTNAG 2 cut(s) 293, 686
BstF5I GGATG 2 cut(s) 261, 600
BstFNI CGCG 4 cut(s) 440, 455, 457, 509
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 5 cut(s) 7, 440, 455, 457, 728
BstKTI GATC 7 cut(s) 131, 153, 224, 261, 324, 537, 645
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 7 cut(s) 128, 150, 221, 258, 321, 534, 642
BstMWI GCNNNNNNNGC 3 cut(s) 41, 459, 732
BstNI CCWGG 2 cut(s) 349, 529
BstSCI CCNGG 3 cut(s) 347, 488, 527
BstUI CGCG 4 cut(s) 440, 455, 457, 509
BstV1I GCAGC 5 cut(s) 22, 188, 256, 597, 611
BstX2I RGATCY 3 cut(s) 221, 321, 642
BstYI RGATCY 3 cut(s) 221, 321, 642
BsuRI GGCC 2 cut(s) 377, 735
BtsCI GGATG 2 cut(s) 261, 600
BtsIMutI CAGTG 1 cut(s) 232
BtuMI TCGCGA 1 cut(s) 509
Cac8I GCNNGC 6 cut(s) 216, 244, 455, 486, 507, 511
CfoI GCGC 5 cut(s) 7, 440, 455, 457, 728
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 570
CseI GACGC 2 cut(s) 594, 605
CviAII CATG 2 cut(s) 15, 379
DdeI CTNAG 2 cut(s) 293, 686
DinI GGCGCC 1 cut(s) 6
DpnI GATC 7 cut(s) 130, 152, 223, 260, 323, 536, 644
DpnII GATC 7 cut(s) 128, 150, 221, 258, 321, 534, 642
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 626
EcoRII CCWGG 2 cut(s) 347, 527
EcoT14I CCWWGG 1 cut(s) 87
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 18, 382
FaiI YATR 3 cut(s) 16, 380, 750
FaqI GGGAC 1 cut(s) 651
FatI CATG 2 cut(s) 14, 378
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 6 cut(s) 36, 202, 270, 441, 611, 625
FokI GGATG 2 cut(s) 268, 587
Fsp4HI GCNGC 6 cut(s) 36, 202, 270, 441, 611, 625
FspBI CTAG 5 cut(s) 137, 219, 450, 485, 675
GlaI GCGC 5 cut(s) 6, 439, 454, 456, 727
GluI GCNGC 6 cut(s) 36, 202, 270, 441, 611, 625
GsuI CTGGAG 2 cut(s) 370, 517
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 377, 735
HapII CCGG 3 cut(s) 330, 363, 489
HgaI GACGC 2 cut(s) 594, 605
HhaI GCGC 5 cut(s) 7, 440, 455, 457, 728
Hin1I GRCGYC 3 cut(s) 5, 386, 597
Hin1II CATG 2 cut(s) 18, 382
Hin6I GCGC 5 cut(s) 5, 438, 453, 455, 726
HinP1I GCGC 5 cut(s) 5, 438, 453, 455, 726
HinfI GANTC 5 cut(s) 113, 188, 235, 410, 652
HpaII CCGG 3 cut(s) 330, 363, 489
HphI GGTGA 6 cut(s) 49, 122, 136, 530, 671, 724
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 8 cut(s) 133, 164, 296, 409, 584, 634, 651, 689
Hpy188III TCNNGA 7 cut(s) 253, 281, 508, 538, 604, 640, 668
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 5 cut(s) 388, 391, 409, 588, 741
HpyAV CCTTC 2 cut(s) 364, 556
HpyCH4III ACNGT 3 cut(s) 61, 665, 693
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 2 cut(s) 204, 304
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 459, 732
HpyF3I CTNAG 2 cut(s) 293, 686
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 3 cut(s) 5, 386, 597
Hsp92II CATG 2 cut(s) 18, 382
HspAI GCGC 5 cut(s) 5, 438, 453, 455, 726
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 7 cut(s) 128, 150, 221, 258, 321, 534, 642
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 5 cut(s) 54, 133, 320, 365, 492
Lsp1109I GCAGC 5 cut(s) 22, 188, 256, 597, 611
MaeI CTAG 5 cut(s) 137, 219, 450, 485, 675
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 4 cut(s) 61, 334, 464, 659
MalI GATC 7 cut(s) 130, 152, 223, 260, 323, 536, 644
MbiI CCGCTC 1 cut(s) 315
MboI GATC 7 cut(s) 128, 150, 221, 258, 321, 534, 642
MboII GAAGA 5 cut(s) 266, 544, 559, 562, 571
MflI RGATCY 3 cut(s) 221, 321, 642
MhlI GDGCHC 1 cut(s) 525
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 2 cut(s) 157, 701
MluNI TGGCCA 1 cut(s) 377
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 5 cut(s) 122, 182, 229, 419, 646
MmeI TCCRAC 2 cut(s) 387, 607
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 1 cut(s) 766
MslI CAYNNNNRTG 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 3 cut(s) 330, 363, 489
MspR9I CCNGG 3 cut(s) 349, 490, 529
MvaI CCWGG 2 cut(s) 349, 529
MvnI CGCG 4 cut(s) 440, 455, 457, 509
MwoI GCNNNNNNNGC 3 cut(s) 41, 459, 732
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 490
NdeII GATC 7 cut(s) 128, 150, 221, 258, 321, 534, 642
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 2 cut(s) 18, 382
NlaIV GGNNCC 2 cut(s) 6, 571
NmuCI GTSAC 4 cut(s) 61, 334, 464, 659
NruI TCGCGA 1 cut(s) 509
PauI GCGCGC 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PflFI GACNNNGTC 1 cut(s) 385
PfoI TCCNGGA 1 cut(s) 347
PkrI GCNGC 6 cut(s) 37, 203, 271, 442, 612, 626
PleI GAGTC 5 cut(s) 121, 182, 229, 418, 646
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 5 cut(s) 121, 182, 229, 418, 646
Psp6I CCWGG 2 cut(s) 347, 527
PspGI CCWGG 2 cut(s) 347, 527
PspN4I GGNNCC 2 cut(s) 6, 571
PspPI GGNCC 1 cut(s) 570
PsuI RGATCY 3 cut(s) 221, 321, 642
PsyI GACNNNGTC 1 cut(s) 385
PteI GCGCGC 1 cut(s) 453
PvuII CAGCTG 1 cut(s) 35
RruI TCGCGA 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 282
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 766
SatI GCNGC 6 cut(s) 36, 202, 270, 441, 611, 625
Sau3AI GATC 7 cut(s) 128, 150, 221, 258, 321, 534, 642
Sau96I GGNCC 1 cut(s) 570
SchI GAGTC 5 cut(s) 122, 182, 229, 419, 646
ScrFI CCNGG 3 cut(s) 349, 490, 529
SduI GDGCHC 1 cut(s) 525
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 2 cut(s) 237, 618
SmoI CTYRAG 2 cut(s) 237, 618
Sse9I AATT 2 cut(s) 157, 701
SsiI CCGC 5 cut(s) 93, 108, 313, 440, 573
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 5 cut(s) 137, 219, 450, 485, 675
StyD4I CCNGG 3 cut(s) 347, 488, 527
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 61, 665, 693
TaiI ACGT 1 cut(s) 389
TasI AATT 2 cut(s) 157, 701
TauI GCSGC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 766
Tru9I TTAA 1 cut(s) 766
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 4 cut(s) 61, 334, 464, 659
TseI GCWGC 5 cut(s) 35, 201, 269, 610, 624
Tsp45I GTSAC 4 cut(s) 61, 334, 464, 659
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 1 cut(s) 232
Tth111I GACNNNGTC 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 570
XapI RAATTY 1 cut(s) 701
XspI CTAG 5 cut(s) 137, 219, 450, 485, 675
ZraI GACGTC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.