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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58050 AT3G58050 |
| fragaria_vesca | FvH4_6g21890 |
| malus_domestica | MD12G1054800.v1.1 MD14G1054100.v1.1 |
| prunus_persica | Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 |
| pyrus_communis | pycom12g04770 pycom14g04460 |
| rosa_chinensis | RchiOBHm_Chr3g0479241 |
| rosa_laevigata | RLG00000023591 |
| rosa_multiflora | Rmu_sc0002978.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00402500 |
| rosa_rugosa | Rorug03G0172400 Rorug03G0173000 Rorug03G0173100 Rorug03G0173200 |
| rosa_samantha | Rh3AG224200 Rh3AG224500 Rh3BG257100 Rh3CG252700 Rh3DG248900 |
| rosa_wichuraiana | Rw3G020090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1074 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3387 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3095 |
| AccBSI | CCGCTC | 4 cut(s) | 1400, 1549, 1838, 3145 |
| AccI | GTMKAC | 1 cut(s) | 2345 |
| AccII | CGCG | 2 cut(s) | 2272, 3444 |
| AccIII | TCCGGA | 3 cut(s) | 256, 956, 2887 |
| AclI | AACGTT | 1 cut(s) | 765 |
| AcoI | YGGCCR | 1 cut(s) | 1084 |
| AcsI | RAATTY | 5 cut(s) | 274, 1045, 1672, 2557, 2883 |
| AcuI | CTGAAG | 7 cut(s) | 1116, 1239, 2179, 2514, 2547, 2811, 2832 |
| AcvI | CACGTG | 1 cut(s) | 401 |
| AcyI | GRCGYC | 1 cut(s) | 2796 |
| AdeI | CACNNNGTG | 1 cut(s) | 659 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 383, 865, 1575, 2072, 2725, 2978, 3095, 3432 |
| AflII | CTTAAG | 2 cut(s) | 137, 788 |
| AflIII | ACRYGT | 4 cut(s) | 180, 398, 596, 1462 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2572 |
| AjnI | CCWGG | 2 cut(s) | 1780, 3229 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 839, 871, 2312, 2344 |
| AleI | CACNNNNGTG | 1 cut(s) | 1851 |
| Alw21I | GWGCWC | 2 cut(s) | 604, 1275 |
| Alw26I | GTCTC | 9 cut(s) | 392, 450, 706, 744, 1709, 1779, 2148, 2580, 3076 |
| Ama87I | CYCGRG | 2 cut(s) | 486, 1326 |
| Aor13HI | TCCGGA | 3 cut(s) | 256, 956, 2887 |
| AoxI | GGCC | 7 cut(s) | 535, 1024, 1084, 2125, 3077, 3233, 3523 |
| ApeKI | GCWGC | 2 cut(s) | 1346, 1666 |
| ApoI | RAATTY | 5 cut(s) | 274, 1045, 1672, 2557, 2883 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1695 |
| AspLEI | GCGC | 2 cut(s) | 19, 3444 |
| AspS9I | GGNCC | 8 cut(s) | 648, 2399, 3078, 3086, 3140, 3233, 3277, 3380 |
| AsuC2I | CCSGG | 3 cut(s) | 9, 539, 2641 |
| AsuHPI | GGTGA | 8 cut(s) | 105, 382, 895, 1199, 1513, 1922, 3030, 3107 |
| AsuNHI | GCTAGC | 1 cut(s) | 563 |
| AvaI | CYCGRG | 2 cut(s) | 486, 1326 |
| AvaII | GGWCC | 6 cut(s) | 648, 2399, 3086, 3140, 3277, 3380 |
| AxyI | CCTNAGG | 1 cut(s) | 3527 |
| BaeGI | GKGCMC | 1 cut(s) | 481 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 621, 654 |
| BamHI | GGATCC | 3 cut(s) | 299, 953, 2258 |
| BanII | GRGCYC | 2 cut(s) | 1275, 2454 |
| BauI | CACGAG | 1 cut(s) | 2364 |
| BbrPI | CACGTG | 1 cut(s) | 401 |
| BbsI | GAAGAC | 4 cut(s) | 1251, 2544, 2799, 3357 |
| Bbv12I | GWGCWC | 2 cut(s) | 604, 1275 |
| BbvCI | CCTCAGC | 1 cut(s) | 1227 |
| BbvI | GCAGC | 2 cut(s) | 1333, 1653 |
| BceAI | ACGGC | 1 cut(s) | 1159 |
| BciT130I | CCWGG | 2 cut(s) | 1782, 3231 |
| BciVI | GTATCC | 4 cut(s) | 658, 880, 1111, 3027 |
| BclI | TGATCA | 1 cut(s) | 1912 |
| BcnI | CCSGG | 3 cut(s) | 9, 539, 2641 |
| BcoDI | GTCTC | 9 cut(s) | 392, 450, 706, 744, 1709, 1779, 2148, 2580, 3076 |
| BfaI | CTAG | 4 cut(s) | 123, 564, 1151, 2418 |
| BfmI | CTRYAG | 4 cut(s) | 754, 2898, 3011, 3384 |
| BfrI | CTTAAG | 2 cut(s) | 137, 788 |
| BfuI | GTATCC | 4 cut(s) | 658, 880, 1111, 3027 |
| BglII | AGATCT | 2 cut(s) | 1693, 1879 |
| BisI | GCNGC | 5 cut(s) | 1087, 1347, 1667, 3210, 3299 |
| BlsI | GCNGC | 5 cut(s) | 1088, 1348, 1668, 3211, 3300 |
| Bme1390I | CCNGG | 5 cut(s) | 9, 539, 1782, 2641, 3231 |
| Bme18I | GGWCC | 6 cut(s) | 648, 2399, 3086, 3140, 3277, 3380 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2572 |
| BmeT110I | CYCGRG | 2 cut(s) | 486, 1326 |
| BmgT120I | GGNCC | 8 cut(s) | 648, 2399, 3078, 3086, 3140, 3233, 3277, 3380 |
| BmiI | GGNNCC | 8 cut(s) | 301, 955, 1396, 2260, 2451, 2460, 3087, 3324 |
| BmrFI | CCNGG | 5 cut(s) | 9, 539, 1782, 2641, 3231 |
| BmrI | ACTGGG | 2 cut(s) | 2880, 2919 |
| BmsI | GCATC | 7 cut(s) | 185, 262, 345, 508, 1203, 1333, 2302 |
| BmtI | GCTAGC | 1 cut(s) | 567 |
| BmuI | ACTGGG | 2 cut(s) | 2880, 2919 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2799 |
| BpiI | GAAGAC | 4 cut(s) | 1251, 2544, 2799, 3357 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 802, 834 |
| BpmI | CTGGAG | 1 cut(s) | 121 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1227, 2720 |
| BpuEI | CTTGAG | 3 cut(s) | 965, 1532, 3314 |
| BpuMI | CCSGG | 3 cut(s) | 9, 539, 2641 |
| Bsa29I | ATCGAT | 1 cut(s) | 66 |
| BsaAI | YACGTR | 1 cut(s) | 401 |
| BsaHI | GRCGYC | 1 cut(s) | 2796 |
| BsaI | GGTCTC | 1 cut(s) | 392 |
| BsaWI | WCCGGW | 4 cut(s) | 256, 956, 2887, 3328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3344, 3374 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 383, 865, 1575, 2072, 2725, 2978, 3095, 3432 |
| Bse21I | CCTNAGG | 1 cut(s) | 3527 |
| Bse3DI | GCAATG | 2 cut(s) | 205, 3526 |
| BseAI | TCCGGA | 3 cut(s) | 256, 956, 2887 |
| BseBI | CCWGG | 2 cut(s) | 1782, 3231 |
| BseCI | ATCGAT | 1 cut(s) | 66 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 383, 865, 1575, 2072, 2725, 2978, 3095, 3432 |
| BseMI | GCAATG | 2 cut(s) | 205, 3526 |
| BseMII | CTCAG | 8 cut(s) | 670, 707, 903, 1218, 2544, 2711, 3299, 3518 |
| BseRI | GAGGAG | 3 cut(s) | 1559, 1754, 2764 |
| BseSI | GKGCMC | 1 cut(s) | 481 |
| BseXI | GCAGC | 2 cut(s) | 1333, 1653 |
| BsgI | GTGCAG | 1 cut(s) | 1979 |
| Bsh1236I | CGCG | 2 cut(s) | 2272, 3444 |
| BshFI | GGCC | 7 cut(s) | 537, 1026, 1086, 2127, 3079, 3235, 3525 |
| BshVI | ATCGAT | 1 cut(s) | 66 |
| BsiHKAI | GWGCWC | 2 cut(s) | 604, 1275 |
| BsiHKCI | CYCGRG | 2 cut(s) | 486, 1326 |
| BsiSI | CCGG | 7 cut(s) | 8, 257, 538, 957, 2640, 2888, 3329 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 383, 865, 1575, 2072, 2725, 2978, 3095, 3432 |
| BsmAI | GTCTC | 9 cut(s) | 392, 450, 706, 744, 1709, 1779, 2148, 2580, 3076 |
| BsmBI | CGTCTC | 1 cut(s) | 1709 |
| BsmI | GAATGC | 5 cut(s) | 810, 922, 1289, 1382, 2113 |
| BsnI | GGCC | 7 cut(s) | 537, 1026, 1086, 2127, 3079, 3235, 3525 |
| Bso31I | GGTCTC | 1 cut(s) | 392 |
| BsoBI | CYCGRG | 2 cut(s) | 486, 1326 |
| Bsp1286I | GDGCHC | 4 cut(s) | 481, 604, 1275, 2454 |
| Bsp13I | TCCGGA | 3 cut(s) | 256, 956, 2887 |
| Bsp19I | CCATGG | 1 cut(s) | 2454 |
| BspANI | GGCC | 7 cut(s) | 537, 1026, 1086, 2127, 3079, 3235, 3525 |
| BspCNI | CTCAG | 8 cut(s) | 669, 708, 904, 1219, 2545, 2712, 3298, 3519 |
| BspDI | ATCGAT | 1 cut(s) | 66 |
| BspEI | TCCGGA | 3 cut(s) | 256, 956, 2887 |
| BspFNI | CGCG | 2 cut(s) | 2272, 3444 |
| BspHI | TCATGA | 1 cut(s) | 2146 |
| BspLI | GGNNCC | 8 cut(s) | 301, 955, 1396, 2260, 2451, 2460, 3087, 3324 |
| BspMAI | CTGCAG | 1 cut(s) | 758 |
| BspOI | GCTAGC | 1 cut(s) | 567 |
| BspTI | CTTAAG | 2 cut(s) | 137, 788 |
| BspTNI | GGTCTC | 1 cut(s) | 392 |
| BsrBI | CCGCTC | 4 cut(s) | 1400, 1549, 1838, 3145 |
| BsrDI | GCAATG | 2 cut(s) | 205, 3526 |
| BssNAI | GTATAC | 1 cut(s) | 2346 |
| BssNI | GRCGYC | 1 cut(s) | 2796 |
| BssSI | CACGAG | 1 cut(s) | 2364 |
| BssT1I | CCWWGG | 3 cut(s) | 1488, 2332, 2454 |
| Bst1107I | GTATAC | 1 cut(s) | 2346 |
| Bst2BI | CACGAG | 1 cut(s) | 2364 |
| Bst2UI | CCWGG | 2 cut(s) | 1782, 3231 |
| Bst6I | CTCTTC | 9 cut(s) | 690, 1215, 1230, 1515, 1536, 2523, 2812, 2870, 3489 |
| BstACI | GRCGYC | 1 cut(s) | 2796 |
| BstAFI | CTTAAG | 2 cut(s) | 137, 788 |
| BstBAI | YACGTR | 1 cut(s) | 401 |
| BstC8I | GCNNGC | 9 cut(s) | 168, 565, 1148, 1215, 1305, 1471, 2270, 3182, 3417 |
| BstDEI | CTNAG | 9 cut(s) | 656, 716, 912, 1064, 1227, 2553, 2720, 3285, 3527 |
| BstDSI | CCRYGG | 3 cut(s) | 377, 2454, 3081 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2723 |
| BstFNI | CGCG | 2 cut(s) | 2272, 3444 |
| BstHHI | GCGC | 2 cut(s) | 19, 3444 |
| BstMAI | GTCTC | 9 cut(s) | 392, 450, 706, 744, 1709, 1779, 2148, 2580, 3076 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1223, 2312, 2458, 2549, 2715, 3181 |
| BstNI | CCWGG | 2 cut(s) | 1782, 3231 |
| BstNSI | RCATGY | 6 cut(s) | 184, 1217, 1307, 1466, 1666, 2986 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2799 |
| BstSCI | CCNGG | 5 cut(s) | 7, 537, 1780, 2639, 3229 |
| BstSFI | CTRYAG | 4 cut(s) | 754, 2898, 3011, 3384 |
| BstSLI | GKGCMC | 1 cut(s) | 481 |
| BstUI | CGCG | 2 cut(s) | 2272, 3444 |
| BstV1I | GCAGC | 2 cut(s) | 1333, 1653 |
| BstV2I | GAAGAC | 4 cut(s) | 1251, 2544, 2799, 3357 |
| BstX2I | RGATCY | 9 cut(s) | 299, 361, 953, 1565, 1693, 1879, 2258, 2671, 3166 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3075, 3377 |
| BstYI | RGATCY | 9 cut(s) | 299, 361, 953, 1565, 1693, 1879, 2258, 2671, 3166 |
| BstZ17I | GTATAC | 1 cut(s) | 2346 |
| Bsu15I | ATCGAT | 1 cut(s) | 66 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3527 |
| BsuI | GTATCC | 4 cut(s) | 658, 880, 1111, 3027 |
| BsuRI | GGCC | 7 cut(s) | 537, 1026, 1086, 2127, 3079, 3235, 3525 |
| BsuTUI | ATCGAT | 1 cut(s) | 66 |
| BtgI | CCRYGG | 3 cut(s) | 377, 2454, 3081 |
| Cac8I | GCNNGC | 9 cut(s) | 168, 565, 1148, 1215, 1305, 1471, 2270, 3182, 3417 |
| CciI | TCATGA | 1 cut(s) | 2146 |
| CfoI | GCGC | 2 cut(s) | 19, 3444 |
| Cfr13I | GGNCC | 8 cut(s) | 648, 2399, 3078, 3086, 3140, 3233, 3277, 3380 |
| ClaI | ATCGAT | 1 cut(s) | 66 |
| CseI | GACGC | 2 cut(s) | 2549, 2804 |
| CsiI | ACCWGGT | 1 cut(s) | 1780 |
| DdeI | CTNAG | 9 cut(s) | 656, 716, 912, 1064, 1227, 2553, 2720, 3285, 3527 |
| DraI | TTTAAA | 2 cut(s) | 1044, 1363 |
| DraIII | CACNNNGTG | 1 cut(s) | 659 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3387 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2572 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3387 |
| EaeI | YGGCCR | 1 cut(s) | 1084 |
| Eam1104I | CTCTTC | 9 cut(s) | 690, 1215, 1230, 1515, 1536, 2523, 2812, 2870, 3489 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2572 |
| EarI | CTCTTC | 9 cut(s) | 690, 1215, 1230, 1515, 1536, 2523, 2812, 2870, 3489 |
| EciI | GGCGGA | 1 cut(s) | 1093 |
| Ecl136II | GAGCTC | 1 cut(s) | 1273 |
| Eco130I | CCWWGG | 3 cut(s) | 1488, 2332, 2454 |
| Eco24I | GRGCYC | 2 cut(s) | 1275, 2454 |
| Eco31I | GGTCTC | 1 cut(s) | 392 |
| Eco32I | GATATC | 2 cut(s) | 976, 2851 |
| Eco47I | GGWCC | 6 cut(s) | 648, 2399, 3086, 3140, 3277, 3380 |
| Eco53kI | GAGCTC | 1 cut(s) | 1273 |
| Eco57I | CTGAAG | 7 cut(s) | 1116, 1239, 2179, 2514, 2547, 2811, 2832 |
| Eco72I | CACGTG | 1 cut(s) | 401 |
| Eco81I | CCTNAGG | 1 cut(s) | 3527 |
| Eco88I | CYCGRG | 2 cut(s) | 486, 1326 |
| EcoICRI | GAGCTC | 1 cut(s) | 1273 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2723 |
| EcoRI | GAATTC | 3 cut(s) | 274, 1672, 2557 |
| EcoRII | CCWGG | 2 cut(s) | 1780, 3229 |
| EcoRV | GATATC | 2 cut(s) | 976, 2851 |
| EcoT14I | CCWWGG | 3 cut(s) | 1488, 2332, 2454 |
| EcoT22I | ATGCAT | 2 cut(s) | 240, 1120 |
| EcoT38I | GRGCYC | 2 cut(s) | 1275, 2454 |
| ErhI | CCWWGG | 3 cut(s) | 1488, 2332, 2454 |
| Esp3I | CGTCTC | 1 cut(s) | 1709 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 607, 639, 1680, 1712 |
| FauI | CCCGC | 2 cut(s) | 891, 3180 |
| FbaI | TGATCA | 1 cut(s) | 1912 |
| FblI | GTMKAC | 1 cut(s) | 2345 |
| Fnu4HI | GCNGC | 5 cut(s) | 1087, 1347, 1667, 3210, 3299 |
| FriOI | GRGCYC | 2 cut(s) | 1275, 2454 |
| Fsp4HI | GCNGC | 5 cut(s) | 1087, 1347, 1667, 3210, 3299 |
| FspBI | CTAG | 4 cut(s) | 123, 564, 1151, 2418 |
| GlaI | GCGC | 2 cut(s) | 18, 3443 |
| GluI | GCNGC | 5 cut(s) | 1087, 1347, 1667, 3210, 3299 |
| GsuI | CTGGAG | 1 cut(s) | 121 |
| HaeIII | GGCC | 7 cut(s) | 537, 1026, 1086, 2127, 3079, 3235, 3525 |
| HapII | CCGG | 7 cut(s) | 8, 257, 538, 957, 2640, 2888, 3329 |
| HgaI | GACGC | 2 cut(s) | 2549, 2804 |
| HhaI | GCGC | 2 cut(s) | 19, 3444 |
| Hin1I | GRCGYC | 1 cut(s) | 2796 |
| Hin6I | GCGC | 2 cut(s) | 17, 3442 |
| HinP1I | GCGC | 2 cut(s) | 17, 3442 |
| HindIII | AAGCTT | 1 cut(s) | 2612 |
| HpaII | CCGG | 7 cut(s) | 8, 257, 538, 957, 2640, 2888, 3329 |
| HphI | GGTGA | 8 cut(s) | 105, 382, 895, 1199, 1513, 1922, 3030, 3107 |
| Hpy166II | GTNNAC | 8 cut(s) | 825, 1141, 1295, 1900, 1930, 2346, 2840, 3380 |
| Hpy8I | GTNNAC | 8 cut(s) | 825, 1141, 1295, 1900, 1930, 2346, 2840, 3380 |
| Hpy99I | CGWCG | 1 cut(s) | 3449 |
| HpyCH4IV | ACGT | 5 cut(s) | 400, 499, 596, 765, 3447 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1223, 2312, 2458, 2549, 2715, 3181 |
| HpyF3I | CTNAG | 9 cut(s) | 656, 716, 912, 1064, 1227, 2553, 2720, 3285, 3527 |
| HpySE526I | ACGT | 5 cut(s) | 400, 499, 596, 765, 3447 |
| Hsp92I | GRCGYC | 1 cut(s) | 2796 |
| HspAI | GCGC | 2 cut(s) | 17, 3442 |
| Kpn2I | TCCGGA | 3 cut(s) | 256, 956, 2887 |
| Ksp22I | TGATCA | 1 cut(s) | 1912 |
| LmnI | GCTCC | 5 cut(s) | 93, 1546, 2449, 2458, 3328 |
| Lsp1109I | GCAGC | 2 cut(s) | 1333, 1653 |
| LweI | GCATC | 7 cut(s) | 185, 262, 345, 508, 1203, 1333, 2302 |
| MabI | ACCWGGT | 1 cut(s) | 1780 |
| MaeI | CTAG | 4 cut(s) | 123, 564, 1151, 2418 |
| MaeII | ACGT | 5 cut(s) | 400, 499, 596, 765, 3447 |
| MaeIII | GTNAC | 8 cut(s) | 111, 320, 335, 1853, 2497, 2587, 2905, 2933 |
| MbiI | CCGCTC | 4 cut(s) | 1400, 1549, 1838, 3145 |
| MfeI | CAATTG | 2 cut(s) | 948, 2704 |
| MflI | RGATCY | 9 cut(s) | 299, 361, 953, 1565, 1693, 1879, 2258, 2671, 3166 |
| MhlI | GDGCHC | 4 cut(s) | 481, 604, 1275, 2454 |
| MlyI | GAGTC | 3 cut(s) | 1751, 2294, 2645 |
| MmeI | TCCRAC | 3 cut(s) | 2371, 2580, 3433 |
| Mph1103I | ATGCAT | 2 cut(s) | 240, 1120 |
| MroI | TCCGGA | 3 cut(s) | 256, 956, 2887 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1695 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1461, 1851, 3375 |
| MspA1I | CMGCKG | 3 cut(s) | 1089, 2255, 3175 |
| MspCI | CTTAAG | 2 cut(s) | 137, 788 |
| MspI | CCGG | 7 cut(s) | 8, 257, 538, 957, 2640, 2888, 3329 |
| MspR9I | CCNGG | 5 cut(s) | 9, 539, 1782, 2641, 3231 |
| MunI | CAATTG | 2 cut(s) | 948, 2704 |
| Mva1269I | GAATGC | 5 cut(s) | 810, 922, 1289, 1382, 2113 |
| MvaI | CCWGG | 2 cut(s) | 1782, 3231 |
| MvnI | CGCG | 2 cut(s) | 2272, 3444 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1223, 2312, 2458, 2549, 2715, 3181 |
| NciI | CCSGG | 3 cut(s) | 9, 539, 2641 |
| NcoI | CCATGG | 1 cut(s) | 2454 |
| NheI | GCTAGC | 1 cut(s) | 563 |
| NlaIV | GGNNCC | 8 cut(s) | 301, 955, 1396, 2260, 2451, 2460, 3087, 3324 |
| NmeAIII | GCCGAG | 1 cut(s) | 1381 |
| NmuCI | GTSAC | 2 cut(s) | 111, 1853 |
| NsiI | ATGCAT | 2 cut(s) | 240, 1120 |
| NspI | RCATGY | 6 cut(s) | 184, 1217, 1307, 1466, 1666, 2986 |
| OliI | CACNNNNGTG | 1 cut(s) | 1851 |
| PaeI | GCATGC | 2 cut(s) | 1217, 1307 |
| PaeR7I | CTCGAG | 2 cut(s) | 486, 1326 |
| PagI | TCATGA | 1 cut(s) | 2146 |
| PasI | CCCWGGG | 1 cut(s) | 3230 |
| PciI | ACATGT | 2 cut(s) | 180, 1462 |
| PctI | GAATGC | 5 cut(s) | 810, 922, 1289, 1382, 2113 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1695 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3095 |
| PkrI | GCNGC | 5 cut(s) | 1088, 1348, 1668, 3211, 3300 |
| PleI | GAGTC | 3 cut(s) | 1750, 2294, 2644 |
| PmaCI | CACGTG | 1 cut(s) | 401 |
| PmlI | CACGTG | 1 cut(s) | 401 |
| PpsI | GAGTC | 3 cut(s) | 1750, 2294, 2644 |
| Ppu21I | YACGTR | 1 cut(s) | 401 |
| PscI | ACATGT | 2 cut(s) | 180, 1462 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2799 |
| PsiI | TTATAA | 1 cut(s) | 1074 |
| Psp124BI | GAGCTC | 1 cut(s) | 1275 |
| Psp1406I | AACGTT | 1 cut(s) | 765 |
| Psp6I | CCWGG | 2 cut(s) | 1780, 3229 |
| PspCI | CACGTG | 1 cut(s) | 401 |
| PspGI | CCWGG | 2 cut(s) | 1780, 3229 |
| PspN4I | GGNNCC | 8 cut(s) | 301, 955, 1396, 2260, 2451, 2460, 3087, 3324 |
| PspPI | GGNCC | 8 cut(s) | 648, 2399, 3078, 3086, 3140, 3233, 3277, 3380 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1443, 1475, 2680, 2712 |
| PstI | CTGCAG | 1 cut(s) | 758 |
| PsuI | RGATCY | 9 cut(s) | 299, 361, 953, 1565, 1693, 1879, 2258, 2671, 3166 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1461, 1851, 3375 |
| SacI | GAGCTC | 1 cut(s) | 1275 |
| SatI | GCNGC | 5 cut(s) | 1087, 1347, 1667, 3210, 3299 |
| Sau96I | GGNCC | 8 cut(s) | 648, 2399, 3078, 3086, 3140, 3233, 3277, 3380 |
| SchI | GAGTC | 3 cut(s) | 1751, 2294, 2645 |
| ScrFI | CCNGG | 5 cut(s) | 9, 539, 1782, 2641, 3231 |
| SduI | GDGCHC | 4 cut(s) | 481, 604, 1275, 2454 |
| SexAI | ACCWGGT | 1 cut(s) | 1780 |
| SfaNI | GCATC | 7 cut(s) | 185, 262, 345, 508, 1203, 1333, 2302 |
| SfcI | CTRYAG | 4 cut(s) | 754, 2898, 3011, 3384 |
| Sfr274I | CTCGAG | 2 cut(s) | 486, 1326 |
| SinI | GGWCC | 6 cut(s) | 648, 2399, 3086, 3140, 3277, 3380 |
| SlaI | CTCGAG | 2 cut(s) | 486, 1326 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1461, 1851, 3375 |
| SmlI | CTYRAG | 7 cut(s) | 137, 486, 788, 980, 1326, 1511, 3293 |
| SmoI | CTYRAG | 7 cut(s) | 137, 486, 788, 980, 1326, 1511, 3293 |
| SphI | GCATGC | 2 cut(s) | 1217, 1307 |
| SspMI | CTAG | 4 cut(s) | 123, 564, 1151, 2418 |
| SstI | GAGCTC | 1 cut(s) | 1275 |
| StyD4I | CCNGG | 5 cut(s) | 7, 537, 1780, 2639, 3229 |
| StyI | CCWWGG | 3 cut(s) | 1488, 2332, 2454 |
| TaiI | ACGT | 5 cut(s) | 403, 502, 599, 768, 3450 |
| TaqI | TCGA | 9 cut(s) | 66, 213, 487, 670, 729, 1275, 1327, 2693, 3410 |
| TatI | WGTACW | 2 cut(s) | 1899, 2687 |
| TauI | GCSGC | 3 cut(s) | 1089, 3212, 3301 |
| TseFI | GTSAC | 2 cut(s) | 111, 1853 |
| TseI | GCWGC | 2 cut(s) | 1346, 1666 |
| Tsp45I | GTSAC | 2 cut(s) | 111, 1853 |
| TspGWI | ACGGA | 5 cut(s) | 354, 354, 366, 2772, 3177 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3095 |
| Vha464I | CTTAAG | 2 cut(s) | 137, 788 |
| VpaK11BI | GGWCC | 6 cut(s) | 648, 2399, 3086, 3140, 3277, 3380 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2723 |
| XapI | RAATTY | 5 cut(s) | 274, 1045, 1672, 2557, 2883 |
| XceI | RCATGY | 6 cut(s) | 184, 1217, 1307, 1466, 1666, 2986 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 41, 3072 |
| XhoI | CTCGAG | 2 cut(s) | 486, 1326 |
| XmiI | GTMKAC | 1 cut(s) | 2345 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1695 |
| XspI | CTAG | 4 cut(s) | 123, 564, 1151, 2418 |
| Zsp2I | ATGCAT | 2 cut(s) | 240, 1120 |