Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007223

Physical Location & Seq

Genomic Coordinates Reverse (-)

23079909 .. 23081459

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG224500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCCTGGCTTAGCTCACAGGGACGACCAATTCAGTGATGGGGCTTCCCCCATTTACACACTCTCCTCCCCCAATGGGTTTTGGTCCAAGCATCGCGACGATGTCAGCTACAATCAGCTCCAGAAGTTTTGGAGTGAGCTGTCACCACAAGCTCGGCAGAAACTTCTCAGGATTGACAAGCACACCCTTTTTGAACAAGCTCGTAAGAACATGTACTGCTCTAGATGCAATGGGTTACTGCTTGAAGGCTTTTTGCAGATTGTCATGTATGGAAAGTCTTTGAAGCAGGAGGGTGCAGGTGGGCAACTTTCCTGCAACAGATCAAAGGTCTCAAAAAGTCAAAAGGACGGTACAAGCATTACTAATGGGTGCCATGATGAAATCCCTGATCCATCTGTCCATCCTTGGGGTGGTCTAACCATTACACGTGAGGGGTCTTTAACACTCATGGATTGCTACTTGTATTGTAAGTCCCTCAAGGGGCTTCAAAATGTGTTTGACAGTGCACGTGCAAGGGAGCGAGAACGTGAATTACTTTATCCTGATGCCTGTGGTGGGGGAGGTCGAGGTTGGATAAGCCAAGGAATGGCGAGTTATGGCAGAGGACATGGAACACGGGAAACATGTGCGTTGCACACTGCCAGGCTTTCTTGTGATACATTAGTGGATTTCTGGTCCGCACTTGGAGAAGAAACTCGGCAGTCTCTTCTTAGGATGAAGGAAGAGGATTTCATTGAGAGGCTCATGTACAGGTGTTTGGCTACTTCTTTTATCTTCTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

29.39

Weight (kDa)

8.3

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58050 AT3G58050
fragaria_vesca	FvH4_6g21890
malus_domestica	MD12G1054800.v1.1 MD14G1054100.v1.1
prunus_persica	Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1
pyrus_communis	pycom12g04770 pycom14g04460
rosa_chinensis	RchiOBHm_Chr3g0479241
rosa_laevigata	RLG00000023591
rosa_multiflora	Rmu_sc0002978.1_g000010
rosa_roxburghii	Rroxscaffold_6G00402500
rosa_rugosa	Rorug03G0172400 Rorug03G0173000 Rorug03G0173100 Rorug03G0173200
rosa_samantha	Rh3AG224200 Rh3AG224500 Rh3BG257100 Rh3CG252700 Rh3DG248900
rosa_wichuraiana	Rw3G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	678
AclWI	GGATC	1 cut(s)	383
AcvI	CACGTG	2 cut(s)	428, 509
AfaI	GTAC	3 cut(s)	215, 352, 749
AfiI	CCNNNNNNNGG	6 cut(s)	75, 406, 410, 480, 555, 586
AflIII	ACRYGT	3 cut(s)	210, 425, 623
AgsI	TTSAA	4 cut(s)	194, 245, 283, 488
AjnI	CCWGG	2 cut(s)	4, 641
AluBI	AGCT	6 cut(s)	14, 108, 118, 139, 152, 200
AluI	AGCT	6 cut(s)	14, 108, 118, 139, 152, 200
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	334, 708
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	383
ApaLI	GTGCAC	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	84, 675
AsuHPI	GGTGA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	84, 675
BaeGI	GKGCMC	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	648, 681
BanI	GGYRCC	1 cut(s)	369
BbrPI	CACGTG	2 cut(s)	428, 509
Bbv12I	GWGCWC	1 cut(s)	508
BccI	CCATC	3 cut(s)	32, 400, 408
BciT130I	CCWGG	2 cut(s)	6, 643
BcoDI	GTCTC	2 cut(s)	334, 708
BfaI	CTAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	287
BlpI	GCTNAGC	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	6, 643
Bme18I	GGWCC	2 cut(s)	84, 675
BmgT120I	GGNCC	2 cut(s)	84, 675
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	2 cut(s)	6, 643
BmsI	GCATC	3 cut(s)	100, 215, 535
BpmI	CTGGAG	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	461
BsaAI	YACGTR	2 cut(s)	428, 509
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	404, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 406, 410, 480, 555, 586
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	6, 643
BseDI	CCNNGG	2 cut(s)	404, 580
BseGI	GGATG	2 cut(s)	400, 720
BseLI	CCNNNNNNNGG	6 cut(s)	75, 406, 410, 480, 555, 586
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	508
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	508
BslFI	GGGAC	2 cut(s)	35, 457
BslI	CCNNNNNNNGG	6 cut(s)	75, 406, 410, 480, 555, 586
BsmAI	GTCTC	2 cut(s)	334, 708
BsmFI	GGGAC	2 cut(s)	35, 457
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	747
Bsp143I	GATC	2 cut(s)	320, 388
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	1 cut(s)	678
BspCNI	CTCAG	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	371
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	747
BssECI	CCNNGG	2 cut(s)	404, 580
BssMI	GATC	2 cut(s)	320, 388
BssT1I	CCWWGG	2 cut(s)	404, 580
Bst2UI	CCWGG	2 cut(s)	6, 643
Bst4CI	ACNGT	2 cut(s)	350, 503
Bst6I	CTCTTC	2 cut(s)	711, 717
BstAUI	TGTACA	1 cut(s)	747
BstBAI	YACGTR	2 cut(s)	428, 509
BstDEI	CTNAG	3 cut(s)	10, 167, 710
BstF5I	GGATG	2 cut(s)	400, 720
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	323, 391
BstMAI	GTCTC	2 cut(s)	334, 708
BstMBI	GATC	2 cut(s)	320, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	2 cut(s)	6, 643
BstNSI	RCATGY	2 cut(s)	214, 627
BstSCI	CCNGG	2 cut(s)	4, 641
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	400, 720
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	3 cut(s)	40, 508, 636
BtuMI	TCGCGA	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	84, 675
Csp6I	GTAC	3 cut(s)	214, 351, 748
CviAII	CATG	8 cut(s)	211, 265, 374, 448, 608, 624, 745, 783
CviQI	GTAC	3 cut(s)	214, 351, 748
DdeI	CTNAG	3 cut(s)	10, 167, 710
DpnI	GATC	2 cut(s)	322, 390
DpnII	GATC	2 cut(s)	320, 388
Eam1104I	CTCTTC	2 cut(s)	711, 717
EarI	CTCTTC	2 cut(s)	711, 717
Eco130I	CCWWGG	2 cut(s)	404, 580
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	84, 675
Eco72I	CACGTG	2 cut(s)	428, 509
EcoRII	CCWGG	2 cut(s)	4, 641
EcoT14I	CCWWGG	2 cut(s)	404, 580
ErhI	CCWWGG	2 cut(s)	404, 580
FaeI	CATG	8 cut(s)	214, 268, 377, 451, 611, 627, 748, 786
FaqI	GGGAC	2 cut(s)	35, 457
FatI	CATG	8 cut(s)	210, 264, 373, 447, 607, 623, 744, 782
FokI	GGATG	2 cut(s)	387, 727
FspBI	CTAG	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	104
Hin1II	CATG	8 cut(s)	214, 268, 377, 451, 611, 627, 748, 786
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188III	TCNNGA	5 cut(s)	95, 121, 169, 222, 542
Hpy8I	GTNNAC	1 cut(s)	506
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	239, 712
HpyCH4III	ACNGT	2 cut(s)	350, 503
HpyCH4IV	ACGT	3 cut(s)	427, 508, 526
HpyCH4V	TGCA	8 cut(s)	228, 256, 296, 315, 506, 512, 634, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	3 cut(s)	10, 167, 710
HpySE526I	ACGT	3 cut(s)	427, 508, 526
Hsp92II	CATG	8 cut(s)	214, 268, 377, 451, 611, 627, 748, 786
Kzo9I	GATC	2 cut(s)	320, 388
LmnI	GCTCC	2 cut(s)	123, 517
LweI	GCATC	3 cut(s)	100, 215, 535
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	427, 508, 526
MaeIII	GTNAC	2 cut(s)	141, 234
MalI	GATC	2 cut(s)	322, 390
MboI	GATC	2 cut(s)	320, 388
MboII	GAAGA	4 cut(s)	698, 701, 734, 766
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	2 cut(s)	29, 530
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	9 cut(s)	76, 283, 424, 485, 554, 560, 596, 718, 732
MseI	TTAA	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	6, 643
MvaI	CCWGG	2 cut(s)	6, 643
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	320, 388
NlaIII	CATG	8 cut(s)	214, 268, 377, 451, 611, 627, 748, 786
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	2 cut(s)	133, 676
NmuCI	GTSAC	1 cut(s)	141
NruI	TCGCGA	1 cut(s)	96
NspI	RCATGY	2 cut(s)	214, 627
PaqCI	CACCTGC	1 cut(s)	287
PciI	ACATGT	2 cut(s)	210, 623
PflFI	GACNNNGTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	586
PmaCI	CACGTG	2 cut(s)	428, 509
PmlI	CACGTG	2 cut(s)	428, 509
Ppu21I	YACGTR	2 cut(s)	428, 509
PscI	ACATGT	2 cut(s)	210, 623
Psp6I	CCWGG	2 cut(s)	4, 641
PspCI	CACGTG	2 cut(s)	428, 509
PspGI	CCWGG	2 cut(s)	4, 641
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	2 cut(s)	84, 675
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PsyI	GACNNNGTC	1 cut(s)	101
RruI	TCGCGA	1 cut(s)	96
RsaI	GTAC	3 cut(s)	215, 352, 749
RsaNI	GTAC	3 cut(s)	214, 351, 748
SaqAI	TTAA	1 cut(s)	440
Sau3AI	GATC	2 cut(s)	320, 388
Sau96I	GGNCC	2 cut(s)	84, 675
ScrFI	CCNGG	2 cut(s)	6, 643
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	3 cut(s)	100, 215, 535
SinI	GGWCC	2 cut(s)	84, 675
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	29, 530
SsiI	CCGC	1 cut(s)	678
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	4, 641
StyI	CCWWGG	2 cut(s)	404, 580
TaaI	ACNGT	2 cut(s)	350, 503
TaiI	ACGT	3 cut(s)	430, 511, 529
TaqI	TCGA	1 cut(s)	565
TasI	AATT	2 cut(s)	29, 530
TatI	WGTACW	2 cut(s)	213, 747
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	3 cut(s)	40, 508, 643
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	3 cut(s)	393, 721, 731
TspRI	CASTG	3 cut(s)	40, 508, 643
Tth111I	GACNNNGTC	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	586
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	2 cut(s)	84, 675
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	2 cut(s)	214, 627
XcmI	CCANNNNNNNNNTGG	2 cut(s)	35, 407
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.