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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58050 AT3G58050 |
| fragaria_vesca | FvH4_6g21890 |
| malus_domestica | MD12G1054800.v1.1 MD14G1054100.v1.1 |
| prunus_persica | Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 |
| pyrus_communis | pycom12g04770 pycom14g04460 |
| rosa_chinensis | RchiOBHm_Chr3g0479241 |
| rosa_laevigata | RLG00000023591 |
| rosa_multiflora | Rmu_sc0002978.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00402500 |
| rosa_rugosa | Rorug03G0172400 Rorug03G0173000 Rorug03G0173100 Rorug03G0173200 |
| rosa_samantha | Rh3AG224200 Rh3AG224500 Rh3BG257100 Rh3CG252700 Rh3DG248900 |
| rosa_wichuraiana | Rw3G020090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 287 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2178 |
| Acc36I | ACCTGC | 1 cut(s) | 287 |
| AccB1I | GGYRCC | 2 cut(s) | 369, 924 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 586, 3056, 3248 |
| AccI | GTMKAC | 1 cut(s) | 2170 |
| AccII | CGCG | 2 cut(s) | 96, 3386 |
| AciI | CCGC | 7 cut(s) | 639, 678, 835, 1923, 2304, 3384, 3386 |
| AclWI | GGATC | 5 cut(s) | 383, 1825, 2064, 2134, 2780 |
| AcsI | RAATTY | 9 cut(s) | 1010, 1358, 1827, 1868, 1976, 2484, 2646, 3432, 3634 |
| AcuI | CTGAAG | 3 cut(s) | 845, 1266, 2592 |
| AcvI | CACGTG | 2 cut(s) | 428, 509 |
| AcyI | GRCGYC | 2 cut(s) | 925, 2026 |
| AdeI | CACNNNGTG | 1 cut(s) | 2606 |
| AfaI | GTAC | 8 cut(s) | 215, 352, 749, 912, 1839, 1927, 2725, 3168 |
| AfeI | AGCGCT | 1 cut(s) | 830 |
| AflII | CTTAAG | 1 cut(s) | 2548 |
| AflIII | ACRYGT | 4 cut(s) | 210, 425, 623, 2293 |
| AjiI | CACGTC | 1 cut(s) | 2404 |
| AjnI | CCWGG | 4 cut(s) | 4, 641, 1813, 2602 |
| Alw21I | GWGCWC | 4 cut(s) | 508, 2267, 2734, 3538 |
| Alw26I | GTCTC | 6 cut(s) | 334, 477, 708, 1472, 2096, 2315 |
| Alw44I | GTGCAC | 1 cut(s) | 504 |
| AlwI | GGATC | 5 cut(s) | 383, 1825, 2064, 2134, 2780 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2348, 2537 |
| Ama87I | CYCGRG | 1 cut(s) | 1353 |
| Aor51HI | AGCGCT | 1 cut(s) | 830 |
| AoxI | GGCC | 6 cut(s) | 41, 1051, 1811, 2152, 2423, 3230 |
| ApaLI | GTGCAC | 1 cut(s) | 504 |
| ApoI | RAATTY | 9 cut(s) | 1010, 1358, 1827, 1868, 1976, 2484, 2646, 3432, 3634 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1868, 1900, 2421, 2453 |
| AseI | ATTAAT | 2 cut(s) | 2121, 3312 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1362 |
| AspLEI | GCGC | 3 cut(s) | 831, 927, 2633 |
| AspS9I | GGNCC | 7 cut(s) | 41, 84, 675, 2153, 2180, 2424, 3602 |
| AsuHPI | GGTGA | 9 cut(s) | 135, 1078, 1805, 2102, 2592, 2618, 2633, 2654, 3203 |
| AsuNHI | GCTAGC | 2 cut(s) | 3113, 3290 |
| AvaI | CYCGRG | 1 cut(s) | 1353 |
| AvaII | GGWCC | 4 cut(s) | 84, 675, 2180, 3602 |
| AxyI | CCTNAGG | 1 cut(s) | 1091 |
| BaeGI | GKGCMC | 1 cut(s) | 508 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 648, 681 |
| BanI | GGYRCC | 2 cut(s) | 369, 924 |
| BanII | GRGCYC | 2 cut(s) | 1752, 2496 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3004, 3036 |
| BbrPI | CACGTG | 2 cut(s) | 428, 509 |
| BbsI | GAAGAC | 1 cut(s) | 3038 |
| Bbv12I | GWGCWC | 4 cut(s) | 508, 2267, 2734, 3538 |
| BccI | CCATC | 9 cut(s) | 400, 408, 896, 1103, 1184, 1283, 1298, 1892, 3482 |
| BceAI | ACGGC | 1 cut(s) | 3244 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2357, 2391 |
| BciT130I | CCWGG | 4 cut(s) | 6, 643, 1815, 2604 |
| BciVI | GTATCC | 2 cut(s) | 1993, 2526 |
| BclI | TGATCA | 1 cut(s) | 3703 |
| BcoDI | GTCTC | 6 cut(s) | 334, 477, 708, 1472, 2096, 2315 |
| BfmI | CTRYAG | 1 cut(s) | 1171 |
| BfoI | RGCGCY | 2 cut(s) | 832, 928 |
| BfrI | CTTAAG | 1 cut(s) | 2548 |
| BfuAI | ACCTGC | 1 cut(s) | 287 |
| BfuI | GTATCC | 2 cut(s) | 1993, 2526 |
| BlpI | GCTNAGC | 1 cut(s) | 10 |
| Bme1390I | CCNGG | 4 cut(s) | 6, 643, 1815, 2604 |
| Bme18I | GGWCC | 4 cut(s) | 84, 675, 2180, 3602 |
| BmeT110I | CYCGRG | 1 cut(s) | 1353 |
| BmgBI | CACGTC | 1 cut(s) | 2404 |
| BmgT120I | GGNCC | 7 cut(s) | 41, 84, 675, 2153, 2180, 2424, 3602 |
| BmiI | GGNNCC | 8 cut(s) | 371, 843, 926, 1678, 1749, 2493, 3124, 3390 |
| BmrFI | CCNGG | 4 cut(s) | 6, 643, 1815, 2604 |
| BmsI | GCATC | 9 cut(s) | 100, 215, 535, 1360, 1464, 2038, 2742, 2899, 3527 |
| BmtI | GCTAGC | 2 cut(s) | 3117, 3294 |
| BpiI | GAAGAC | 1 cut(s) | 3038 |
| BpmI | CTGGAG | 2 cut(s) | 104, 2091 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 1 cut(s) | 461 |
| BsaAI | YACGTR | 2 cut(s) | 428, 509 |
| BsaHI | GRCGYC | 2 cut(s) | 925, 2026 |
| BsaI | GGTCTC | 2 cut(s) | 334, 2315 |
| BsaJI | CCNNGG | 7 cut(s) | 404, 580, 1278, 2496, 2519, 3298, 3384 |
| BsaWI | WCCGGW | 1 cut(s) | 2734 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 47, 77, 3410, 3440 |
| Bse118I | RCCGGY | 1 cut(s) | 2028 |
| Bse1I | ACTGG | 2 cut(s) | 3221, 3499 |
| Bse21I | CCTNAGG | 1 cut(s) | 1091 |
| Bse3DI | GCAATG | 3 cut(s) | 235, 2980, 3766 |
| BseBI | CCWGG | 4 cut(s) | 6, 643, 1815, 2604 |
| BseDI | CCNNGG | 7 cut(s) | 404, 580, 1278, 2496, 2519, 3298, 3384 |
| BseMI | GCAATG | 3 cut(s) | 235, 2980, 3766 |
| BseMII | CTCAG | 7 cut(s) | 181, 1082, 1113, 2213, 2544, 2910, 3336 |
| BseNI | ACTGG | 2 cut(s) | 3221, 3499 |
| BseRI | GAGGAG | 7 cut(s) | 55, 1227, 1568, 1609, 1760, 2783, 3434 |
| BseSI | GKGCMC | 1 cut(s) | 508 |
| BseYI | CCCAGC | 2 cut(s) | 2316, 3126 |
| BsgI | GTGCAG | 3 cut(s) | 315, 835, 2704 |
| Bsh1236I | CGCG | 2 cut(s) | 96, 3386 |
| BshFI | GGCC | 6 cut(s) | 43, 1053, 1813, 2154, 2425, 3232 |
| BshNI | GGYRCC | 2 cut(s) | 369, 924 |
| BsiHKAI | GWGCWC | 4 cut(s) | 508, 2267, 2734, 3538 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1353 |
| BsiSI | CCGG | 2 cut(s) | 2029, 2735 |
| BslFI | GGGAC | 6 cut(s) | 35, 964, 2462, 2858, 3076, 3412 |
| BsmAI | GTCTC | 6 cut(s) | 334, 477, 708, 1472, 2096, 2315 |
| BsmFI | GGGAC | 6 cut(s) | 35, 964, 2462, 2858, 3076, 3412 |
| BsmI | GAATGC | 2 cut(s) | 1316, 2949 |
| BsnI | GGCC | 6 cut(s) | 43, 1053, 1813, 2154, 2425, 3232 |
| Bso31I | GGTCTC | 2 cut(s) | 334, 2315 |
| BsoBI | CYCGRG | 1 cut(s) | 1353 |
| Bsp1286I | GDGCHC | 6 cut(s) | 508, 1752, 2267, 2496, 2734, 3538 |
| Bsp1407I | TGTACA | 4 cut(s) | 747, 1837, 2723, 3166 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 10 |
| Bsp19I | CCATGG | 2 cut(s) | 1278, 2496 |
| Bsp68I | TCGCGA | 1 cut(s) | 96 |
| BspACI | CCGC | 7 cut(s) | 639, 678, 835, 1923, 2304, 3384, 3386 |
| BspANI | GGCC | 6 cut(s) | 43, 1053, 1813, 2154, 2425, 3232 |
| BspCNI | CTCAG | 7 cut(s) | 180, 1083, 1114, 2214, 2543, 2909, 3335 |
| BspFNI | CGCG | 2 cut(s) | 96, 3386 |
| BspLI | GGNNCC | 8 cut(s) | 371, 843, 926, 1678, 1749, 2493, 3124, 3390 |
| BspMAI | CTGCAG | 1 cut(s) | 1175 |
| BspMI | ACCTGC | 1 cut(s) | 287 |
| BspOI | GCTAGC | 2 cut(s) | 3117, 3294 |
| BspPI | GGATC | 5 cut(s) | 383, 1825, 2064, 2134, 2780 |
| BspT107I | GGYRCC | 2 cut(s) | 369, 924 |
| BspTI | CTTAAG | 1 cut(s) | 2548 |
| BspTNI | GGTCTC | 2 cut(s) | 334, 2315 |
| BsrDI | GCAATG | 3 cut(s) | 235, 2980, 3766 |
| BsrFI | RCCGGY | 1 cut(s) | 2028 |
| BsrGI | TGTACA | 4 cut(s) | 747, 1837, 2723, 3166 |
| BsrI | ACTGG | 2 cut(s) | 3221, 3499 |
| BssAI | RCCGGY | 1 cut(s) | 2028 |
| BssECI | CCNNGG | 7 cut(s) | 404, 580, 1278, 2496, 2519, 3298, 3384 |
| BssNI | GRCGYC | 2 cut(s) | 925, 2026 |
| BssT1I | CCWWGG | 5 cut(s) | 404, 580, 1278, 2496, 3298 |
| Bst2UI | CCWGG | 4 cut(s) | 6, 643, 1815, 2604 |
| Bst4CI | ACNGT | 8 cut(s) | 350, 503, 910, 946, 1381, 1799, 1942, 3575 |
| Bst6I | CTCTTC | 7 cut(s) | 711, 717, 1257, 1331, 1545, 3002, 3648 |
| BstACI | GRCGYC | 2 cut(s) | 925, 2026 |
| BstAFI | CTTAAG | 1 cut(s) | 2548 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 780, 3139 |
| BstAUI | TGTACA | 4 cut(s) | 747, 1837, 2723, 3166 |
| BstBAI | YACGTR | 2 cut(s) | 428, 509 |
| BstDSI | CCRYGG | 3 cut(s) | 1278, 2496, 3384 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2837 |
| BstFNI | CGCG | 2 cut(s) | 96, 3386 |
| BstH2I | RGCGCY | 2 cut(s) | 832, 928 |
| BstHHI | GCGC | 3 cut(s) | 831, 927, 2633 |
| BstMAI | GTCTC | 6 cut(s) | 334, 477, 708, 1472, 2096, 2315 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 225, 780, 820, 878, 1250, 2262, 2567, 2829, 3139 |
| BstNI | CCWGG | 4 cut(s) | 6, 643, 1815, 2604 |
| BstNSI | RCATGY | 9 cut(s) | 214, 627, 1244, 1334, 2297, 2683, 3142, 3337, 3714 |
| BstSCI | CCNGG | 4 cut(s) | 4, 641, 1813, 2602 |
| BstSFI | CTRYAG | 1 cut(s) | 1171 |
| BstSLI | GKGCMC | 1 cut(s) | 508 |
| BstUI | CGCG | 2 cut(s) | 96, 3386 |
| BstV2I | GAAGAC | 1 cut(s) | 3038 |
| BstX2I | RGATCY | 2 cut(s) | 1817, 2069 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3228, 3599 |
| BstYI | RGATCY | 2 cut(s) | 1817, 2069 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1091 |
| BsuI | GTATCC | 2 cut(s) | 1993, 2526 |
| BsuRI | GGCC | 6 cut(s) | 43, 1053, 1813, 2154, 2425, 3232 |
| BtgI | CCRYGG | 3 cut(s) | 1278, 2496, 3384 |
| BtgZI | GCGATG | 1 cut(s) | 77 |
| BtrI | CACGTC | 1 cut(s) | 2404 |
| BtsI | GCAGTG | 2 cut(s) | 1168, 2692 |
| BtsIMutI | CAGTG | 7 cut(s) | 40, 508, 1119, 1168, 1413, 1804, 2692 |
| BtuMI | TCGCGA | 1 cut(s) | 96 |
| BveI | ACCTGC | 1 cut(s) | 287 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2348, 2537 |
| CfoI | GCGC | 3 cut(s) | 831, 927, 2633 |
| Cfr10I | RCCGGY | 1 cut(s) | 2028 |
| Cfr13I | GGNCC | 7 cut(s) | 41, 84, 675, 2153, 2180, 2424, 3602 |
| Cfr42I | CCGCGG | 1 cut(s) | 3387 |
| CseI | GACGC | 1 cut(s) | 2034 |
| CsiI | ACCWGGT | 1 cut(s) | 2602 |
| Csp6I | GTAC | 8 cut(s) | 214, 351, 748, 911, 1838, 1926, 2724, 3167 |
| CviQI | GTAC | 8 cut(s) | 214, 351, 748, 911, 1838, 1926, 2724, 3167 |
| DinI | GGCGCC | 1 cut(s) | 926 |
| DraIII | CACNNNGTG | 1 cut(s) | 2606 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2178 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2178 |
| Eam1104I | CTCTTC | 7 cut(s) | 711, 717, 1257, 1331, 1545, 3002, 3648 |
| EarI | CTCTTC | 7 cut(s) | 711, 717, 1257, 1331, 1545, 3002, 3648 |
| Eco130I | CCWWGG | 5 cut(s) | 404, 580, 1278, 2496, 3298 |
| Eco147I | AGGCCT | 1 cut(s) | 1813 |
| Eco24I | GRGCYC | 2 cut(s) | 1752, 2496 |
| Eco31I | GGTCTC | 2 cut(s) | 334, 2315 |
| Eco47I | GGWCC | 4 cut(s) | 84, 675, 2180, 3602 |
| Eco47III | AGCGCT | 1 cut(s) | 830 |
| Eco57I | CTGAAG | 3 cut(s) | 845, 1266, 2592 |
| Eco72I | CACGTG | 2 cut(s) | 428, 509 |
| Eco81I | CCTNAGG | 1 cut(s) | 1091 |
| Eco88I | CYCGRG | 1 cut(s) | 1353 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2837 |
| EcoRII | CCWGG | 4 cut(s) | 4, 641, 1813, 2602 |
| EcoT14I | CCWWGG | 5 cut(s) | 404, 580, 1278, 2496, 3298 |
| EcoT22I | ATGCAT | 2 cut(s) | 2951, 3712 |
| EcoT38I | GRGCYC | 2 cut(s) | 1752, 2496 |
| EgeI | GGCGCC | 1 cut(s) | 926 |
| EheI | GGCGCC | 1 cut(s) | 926 |
| ErhI | CCWWGG | 5 cut(s) | 404, 580, 1278, 2496, 3298 |
| FaqI | GGGAC | 6 cut(s) | 35, 964, 2462, 2858, 3076, 3412 |
| FauI | CCCGC | 1 cut(s) | 2311 |
| FauNDI | CATATG | 1 cut(s) | 3564 |
| FbaI | TGATCA | 1 cut(s) | 3703 |
| FblI | GTMKAC | 1 cut(s) | 2170 |
| FriOI | GRGCYC | 2 cut(s) | 1752, 2496 |
| GlaI | GCGC | 3 cut(s) | 830, 926, 2632 |
| GsaI | CCCAGC | 2 cut(s) | 2320, 3130 |
| GsuI | CTGGAG | 2 cut(s) | 104, 2091 |
| HaeII | RGCGCY | 2 cut(s) | 832, 928 |
| HaeIII | GGCC | 6 cut(s) | 43, 1053, 1813, 2154, 2425, 3232 |
| HapII | CCGG | 2 cut(s) | 2029, 2735 |
| HgaI | GACGC | 1 cut(s) | 2034 |
| HhaI | GCGC | 3 cut(s) | 831, 927, 2633 |
| Hin1I | GRCGYC | 2 cut(s) | 925, 2026 |
| Hin6I | GCGC | 3 cut(s) | 829, 925, 2631 |
| HinP1I | GCGC | 3 cut(s) | 829, 925, 2631 |
| HincII | GTYRAC | 1 cut(s) | 1157 |
| HindII | GTYRAC | 1 cut(s) | 1157 |
| HindIII | AAGCTT | 1 cut(s) | 1478 |
| HpaII | CCGG | 2 cut(s) | 2029, 2735 |
| HphI | GGTGA | 9 cut(s) | 135, 1078, 1805, 2102, 2592, 2618, 2633, 2654, 3203 |
| Hpy99I | CGWCG | 3 cut(s) | 101, 1877, 1968 |
| HpyCH4III | ACNGT | 8 cut(s) | 350, 503, 910, 946, 1381, 1799, 1942, 3575 |
| HpyCH4IV | ACGT | 6 cut(s) | 427, 508, 526, 953, 1402, 2403 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 225, 780, 820, 878, 1250, 2262, 2567, 2829, 3139 |
| HpySE526I | ACGT | 6 cut(s) | 427, 508, 526, 953, 1402, 2403 |
| Hsp92I | GRCGYC | 2 cut(s) | 925, 2026 |
| HspAI | GCGC | 3 cut(s) | 829, 925, 2631 |
| KasI | GGCGCC | 1 cut(s) | 924 |
| Ksp22I | TGATCA | 1 cut(s) | 3703 |
| KspI | CCGCGG | 1 cut(s) | 3387 |
| LweI | GCATC | 9 cut(s) | 100, 215, 535, 1360, 1464, 2038, 2742, 2899, 3527 |
| MabI | ACCWGGT | 1 cut(s) | 2602 |
| MaeII | ACGT | 6 cut(s) | 427, 508, 526, 953, 1402, 2403 |
| MflI | RGATCY | 2 cut(s) | 1817, 2069 |
| MhlI | GDGCHC | 6 cut(s) | 508, 1752, 2267, 2496, 2734, 3538 |
| Mly113I | GGCGCC | 1 cut(s) | 925 |
| MlyI | GAGTC | 3 cut(s) | 1348, 1503, 2098 |
| MmeI | TCCRAC | 3 cut(s) | 551, 958, 3266 |
| Mph1103I | ATGCAT | 2 cut(s) | 2951, 3712 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1362 |
| MseI | TTAA | 9 cut(s) | 440, 1041, 1070, 1973, 2064, 2121, 2141, 2549, 3312 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3597 |
| MspA1I | CMGCKG | 2 cut(s) | 2253, 3386 |
| MspCI | CTTAAG | 1 cut(s) | 2548 |
| MspI | CCGG | 2 cut(s) | 2029, 2735 |
| MspR9I | CCNGG | 4 cut(s) | 6, 643, 1815, 2604 |
| Mva1269I | GAATGC | 2 cut(s) | 1316, 2949 |
| MvaI | CCWGG | 4 cut(s) | 6, 643, 1815, 2604 |
| MvnI | CGCG | 2 cut(s) | 96, 3386 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 225, 780, 820, 878, 1250, 2262, 2567, 2829, 3139 |
| NarI | GGCGCC | 1 cut(s) | 925 |
| NcoI | CCATGG | 2 cut(s) | 1278, 2496 |
| NdeI | CATATG | 1 cut(s) | 3564 |
| NheI | GCTAGC | 2 cut(s) | 3113, 3290 |
| NlaIV | GGNNCC | 8 cut(s) | 371, 843, 926, 1678, 1749, 2493, 3124, 3390 |
| NmeAIII | GCCGAG | 2 cut(s) | 133, 676 |
| NmuCI | GTSAC | 5 cut(s) | 35, 141, 1793, 2225, 2598 |
| NruI | TCGCGA | 1 cut(s) | 96 |
| NsiI | ATGCAT | 2 cut(s) | 2951, 3712 |
| NspI | RCATGY | 9 cut(s) | 214, 627, 1244, 1334, 2297, 2683, 3142, 3337, 3714 |
| PaeI | GCATGC | 4 cut(s) | 1244, 3142, 3337, 3714 |
| PaeR7I | CTCGAG | 1 cut(s) | 1353 |
| PaqCI | CACCTGC | 1 cut(s) | 287 |
| PceI | AGGCCT | 1 cut(s) | 1813 |
| PciI | ACATGT | 3 cut(s) | 210, 623, 2293 |
| PctI | GAATGC | 2 cut(s) | 1316, 2949 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1362 |
| PflFI | GACNNNGTC | 1 cut(s) | 101 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 586, 3056, 3248 |
| PleI | GAGTC | 3 cut(s) | 1347, 1502, 2098 |
| PluTI | GGCGCC | 1 cut(s) | 928 |
| PmaCI | CACGTG | 2 cut(s) | 428, 509 |
| PmlI | CACGTG | 2 cut(s) | 428, 509 |
| PpsI | GAGTC | 3 cut(s) | 1347, 1502, 2098 |
| Ppu21I | YACGTR | 2 cut(s) | 428, 509 |
| PscI | ACATGT | 3 cut(s) | 210, 623, 2293 |
| PshBI | ATTAAT | 2 cut(s) | 2121, 3312 |
| Psp6I | CCWGG | 4 cut(s) | 4, 641, 1813, 2602 |
| PspCI | CACGTG | 2 cut(s) | 428, 509 |
| PspFI | CCCAGC | 2 cut(s) | 2316, 3126 |
| PspGI | CCWGG | 4 cut(s) | 4, 641, 1813, 2602 |
| PspN4I | GGNNCC | 8 cut(s) | 371, 843, 926, 1678, 1749, 2493, 3124, 3390 |
| PspPI | GGNCC | 7 cut(s) | 41, 84, 675, 2153, 2180, 2424, 3602 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 516, 548 |
| PstI | CTGCAG | 1 cut(s) | 1175 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2348, 2537 |
| PsuI | RGATCY | 2 cut(s) | 1817, 2069 |
| PsyI | GACNNNGTC | 1 cut(s) | 101 |
| PvuII | CAGCTG | 1 cut(s) | 2253 |
| RruI | TCGCGA | 1 cut(s) | 96 |
| RsaI | GTAC | 8 cut(s) | 215, 352, 749, 912, 1839, 1927, 2725, 3168 |
| RsaNI | GTAC | 8 cut(s) | 214, 351, 748, 911, 1838, 1926, 2724, 3167 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3597 |
| SacII | CCGCGG | 1 cut(s) | 3387 |
| SaqAI | TTAA | 9 cut(s) | 440, 1041, 1070, 1973, 2064, 2121, 2141, 2549, 3312 |
| Sau96I | GGNCC | 7 cut(s) | 41, 84, 675, 2153, 2180, 2424, 3602 |
| SchI | GAGTC | 3 cut(s) | 1348, 1503, 2098 |
| ScrFI | CCNGG | 4 cut(s) | 6, 643, 1815, 2604 |
| SduI | GDGCHC | 6 cut(s) | 508, 1752, 2267, 2496, 2734, 3538 |
| SexAI | ACCWGGT | 1 cut(s) | 2602 |
| SfaNI | GCATC | 9 cut(s) | 100, 215, 535, 1360, 1464, 2038, 2742, 2899, 3527 |
| SfcI | CTRYAG | 1 cut(s) | 1171 |
| SfoI | GGCGCC | 1 cut(s) | 926 |
| Sfr274I | CTCGAG | 1 cut(s) | 1353 |
| Sfr303I | CCGCGG | 1 cut(s) | 3387 |
| SgrBI | CCGCGG | 1 cut(s) | 3387 |
| SinI | GGWCC | 4 cut(s) | 84, 675, 2180, 3602 |
| SlaI | CTCGAG | 1 cut(s) | 1353 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3597 |
| SmlI | CTYRAG | 3 cut(s) | 476, 1353, 2548 |
| SmoI | CTYRAG | 3 cut(s) | 476, 1353, 2548 |
| SphI | GCATGC | 4 cut(s) | 1244, 3142, 3337, 3714 |
| SseBI | AGGCCT | 1 cut(s) | 1813 |
| SsiI | CCGC | 7 cut(s) | 639, 678, 835, 1923, 2304, 3384, 3386 |
| SspDI | GGCGCC | 1 cut(s) | 924 |
| StuI | AGGCCT | 1 cut(s) | 1813 |
| StyD4I | CCNGG | 4 cut(s) | 4, 641, 1813, 2602 |
| StyI | CCWWGG | 5 cut(s) | 404, 580, 1278, 2496, 3298 |
| TaaI | ACNGT | 8 cut(s) | 350, 503, 910, 946, 1381, 1799, 1942, 3575 |
| TaiI | ACGT | 6 cut(s) | 430, 511, 529, 956, 1405, 2406 |
| TaqI | TCGA | 5 cut(s) | 565, 1354, 1872, 2750, 3194 |
| TatI | WGTACW | 5 cut(s) | 213, 747, 1837, 2723, 3166 |
| Tru1I | TTAA | 9 cut(s) | 440, 1041, 1070, 1973, 2064, 2121, 2141, 2549, 3312 |
| Tru9I | TTAA | 9 cut(s) | 440, 1041, 1070, 1973, 2064, 2121, 2141, 2549, 3312 |
| TscAI | CASTG | 7 cut(s) | 40, 508, 1126, 1175, 1413, 1804, 2692 |
| TseFI | GTSAC | 5 cut(s) | 35, 141, 1793, 2225, 2598 |
| Tsp45I | GTSAC | 5 cut(s) | 35, 141, 1793, 2225, 2598 |
| TspGWI | ACGGA | 3 cut(s) | 788, 1981, 3431 |
| TspRI | CASTG | 7 cut(s) | 40, 508, 1126, 1175, 1413, 1804, 2692 |
| Tth111I | GACNNNGTC | 1 cut(s) | 101 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 586, 3056, 3248 |
| Vha464I | CTTAAG | 1 cut(s) | 2548 |
| VneI | GTGCAC | 1 cut(s) | 504 |
| VpaK11BI | GGWCC | 4 cut(s) | 84, 675, 2180, 3602 |
| VspI | ATTAAT | 2 cut(s) | 2121, 3312 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2837 |
| XapI | RAATTY | 9 cut(s) | 1010, 1358, 1827, 1868, 1976, 2484, 2646, 3432, 3634 |
| XbaI | TCTAGA | 5 cut(s) | 221, 1366, 1525, 1546, 2459 |
| XceI | RCATGY | 9 cut(s) | 214, 627, 1244, 1334, 2297, 2683, 3142, 3337, 3714 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 407, 1768 |
| XhoI | CTCGAG | 1 cut(s) | 1353 |
| XmiI | GTMKAC | 1 cut(s) | 2170 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1362 |
| Zsp2I | ATGCAT | 2 cut(s) | 2951, 3712 |