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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58050 AT3G58050 |
| fragaria_vesca | FvH4_6g21890 |
| malus_domestica | MD12G1054800.v1.1 MD14G1054100.v1.1 |
| prunus_persica | Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 |
| pyrus_communis | pycom12g04770 pycom14g04460 |
| rosa_chinensis | RchiOBHm_Chr3g0479241 |
| rosa_laevigata | RLG00000023591 |
| rosa_multiflora | Rmu_sc0002978.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00402500 |
| rosa_rugosa | Rorug03G0172400 Rorug03G0173000 Rorug03G0173100 Rorug03G0173200 |
| rosa_samantha | Rh3AG224200 Rh3AG224500 Rh3BG257100 Rh3CG252700 Rh3DG248900 |
| rosa_wichuraiana | Rw3G020090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2582, 2603 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2172, 2816 |
| Acc36I | ACCTGC | 2 cut(s) | 2582, 2603 |
| AccB1I | GGYRCC | 2 cut(s) | 372, 927 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 589, 3284 |
| AccI | GTMKAC | 1 cut(s) | 2164 |
| AccII | CGCG | 1 cut(s) | 430 |
| AciI | CCGC | 3 cut(s) | 558, 882, 1325 |
| AclWI | GGATC | 7 cut(s) | 361, 386, 1819, 2128, 3509, 3522, 3711 |
| AcoI | YGGCCR | 1 cut(s) | 1114 |
| AcsI | RAATTY | 4 cut(s) | 1013, 1361, 2481, 3349 |
| AcuI | CTGAAG | 3 cut(s) | 848, 1269, 1695 |
| AcvI | CACGTG | 2 cut(s) | 512, 1826 |
| AcyI | GRCGYC | 1 cut(s) | 928 |
| AdeI | CACNNNGTG | 1 cut(s) | 2579 |
| AfaI | GTAC | 8 cut(s) | 215, 752, 915, 955, 2772, 2827, 3204, 3502 |
| AfeI | AGCGCT | 1 cut(s) | 833 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 318, 409, 413, 589, 2863, 3284 |
| AflIII | ACRYGT | 3 cut(s) | 210, 428, 1823 |
| AgeI | ACCGGT | 1 cut(s) | 2762 |
| AjnI | CCWGG | 3 cut(s) | 1807, 2575, 3406 |
| Alw21I | GWGCWC | 3 cut(s) | 511, 2707, 3529 |
| Alw26I | GTCTC | 6 cut(s) | 711, 1711, 1814, 2090, 2391, 2985 |
| Alw44I | GTGCAC | 1 cut(s) | 507 |
| AlwI | GGATC | 7 cut(s) | 361, 386, 1819, 2128, 3509, 3522, 3711 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2342 |
| Ama87I | CYCGRG | 1 cut(s) | 1356 |
| Aor51HI | AGCGCT | 1 cut(s) | 833 |
| AoxI | GGCC | 6 cut(s) | 327, 1114, 1805, 2146, 3266, 3628 |
| ApaI | GGGCCC | 1 cut(s) | 331 |
| ApaLI | GTGCAC | 1 cut(s) | 507 |
| ApeKI | GCWGC | 8 cut(s) | 852, 1376, 1761, 2244, 2297, 3272, 3379, 3770 |
| ApoI | RAATTY | 4 cut(s) | 1013, 1361, 2481, 3349 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2418, 2450, 3020, 3052 |
| AsiGI | ACCGGT | 1 cut(s) | 2762 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1167 |
| AspLEI | GCGC | 3 cut(s) | 834, 930, 1581 |
| AspS9I | GGNCC | 9 cut(s) | 84, 327, 328, 2147, 2174, 3062, 3224, 3323, 3629 |
| AsuC2I | CCSGG | 2 cut(s) | 6, 3648 |
| AsuHPI | GGTGA | 9 cut(s) | 135, 1894, 1907, 1928, 2565, 2591, 2606, 2627, 3239 |
| AsuII | TTCGAA | 1 cut(s) | 3662 |
| AvaI | CYCGRG | 1 cut(s) | 1356 |
| AvaII | GGWCC | 5 cut(s) | 84, 2174, 3062, 3224, 3323 |
| AxyI | CCTNAGG | 1 cut(s) | 1094 |
| BaeGI | GKGCMC | 2 cut(s) | 331, 511 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 651, 684 |
| BamHI | GGATCC | 1 cut(s) | 3514 |
| BanI | GGYRCC | 2 cut(s) | 372, 927 |
| BanII | GRGCYC | 3 cut(s) | 331, 2493, 3529 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 197, 229, 1903, 1935 |
| BbrPI | CACGTG | 2 cut(s) | 512, 1826 |
| BbsI | GAAGAC | 1 cut(s) | 1875 |
| Bbv12I | GWGCWC | 3 cut(s) | 511, 2707, 3529 |
| BbvI | GCAGC | 8 cut(s) | 839, 1363, 1748, 2256, 2284, 3259, 3391, 3782 |
| BceAI | ACGGC | 1 cut(s) | 1101 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2351, 2385 |
| BciT130I | CCWGG | 3 cut(s) | 1809, 2577, 3408 |
| BciVI | GTATCC | 3 cut(s) | 2308, 2508, 3381 |
| BclI | TGATCA | 2 cut(s) | 1789, 3718 |
| BcnI | CCSGG | 2 cut(s) | 6, 3648 |
| BcoDI | GTCTC | 6 cut(s) | 711, 1711, 1814, 2090, 2391, 2985 |
| BfmI | CTRYAG | 1 cut(s) | 1174 |
| BfoI | RGCGCY | 2 cut(s) | 835, 931 |
| BfuAI | ACCTGC | 2 cut(s) | 2582, 2603 |
| BfuI | GTATCC | 3 cut(s) | 2308, 2508, 3381 |
| BglII | AGATCT | 2 cut(s) | 1060, 2063 |
| BisI | GCNGC | 8 cut(s) | 853, 1377, 1762, 2245, 2298, 3273, 3380, 3771 |
| BlsI | GCNGC | 8 cut(s) | 854, 1378, 1763, 2246, 2299, 3274, 3381, 3772 |
| BmcAI | AGTACT | 1 cut(s) | 2827 |
| Bme1390I | CCNGG | 5 cut(s) | 6, 1809, 2577, 3408, 3648 |
| Bme18I | GGWCC | 5 cut(s) | 84, 2174, 3062, 3224, 3323 |
| BmeT110I | CYCGRG | 1 cut(s) | 1356 |
| BmgT120I | GGNCC | 9 cut(s) | 84, 327, 328, 2147, 2174, 3062, 3224, 3323, 3629 |
| BmiI | GGNNCC | 9 cut(s) | 329, 330, 374, 846, 929, 1743, 2490, 3412, 3516 |
| BmrFI | CCNGG | 5 cut(s) | 6, 1809, 2577, 3408, 3648 |
| BpiI | GAAGAC | 1 cut(s) | 1875 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 832, 864, 1969, 2001 |
| BpmI | CTGGAG | 4 cut(s) | 104, 3261, 3543, 3573 |
| Bpu14I | TTCGAA | 1 cut(s) | 3662 |
| BpuEI | CTTGAG | 3 cut(s) | 464, 856, 2551 |
| BpuMI | CCSGG | 2 cut(s) | 6, 3648 |
| BsaAI | YACGTR | 2 cut(s) | 512, 1826 |
| BsaHI | GRCGYC | 1 cut(s) | 928 |
| BsaI | GGTCTC | 1 cut(s) | 2985 |
| BsaJI | CCNNGG | 4 cut(s) | 407, 583, 1710, 3406 |
| BsaWI | WCCGGW | 1 cut(s) | 2762 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2480, 2501, 2510, 2531, 3670, 3700 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 318, 409, 413, 589, 2863, 3284 |
| Bse118I | RCCGGY | 1 cut(s) | 2762 |
| Bse1I | ACTGG | 6 cut(s) | 1308, 1927, 2157, 3257, 3431, 3556 |
| Bse21I | CCTNAGG | 1 cut(s) | 1094 |
| Bse3DI | GCAATG | 2 cut(s) | 235, 632 |
| BseBI | CCWGG | 3 cut(s) | 1809, 2577, 3408 |
| BseDI | CCNNGG | 4 cut(s) | 407, 583, 1710, 3406 |
| BseGI | GGATG | 9 cut(s) | 403, 723, 1276, 1312, 2220, 2315, 2470, 2677, 2912 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 318, 409, 413, 589, 2863, 3284 |
| BseMI | GCAATG | 2 cut(s) | 235, 632 |
| BseNI | ACTGG | 6 cut(s) | 1308, 1927, 2157, 3257, 3431, 3556 |
| BseRI | GAGGAG | 6 cut(s) | 853, 1230, 1603, 1754, 2756, 3461 |
| BseSI | GKGCMC | 2 cut(s) | 331, 511 |
| BseXI | GCAGC | 8 cut(s) | 839, 1363, 1748, 2256, 2284, 3259, 3391, 3782 |
| BsgI | GTGCAG | 3 cut(s) | 838, 2610, 3398 |
| Bsh1236I | CGCG | 1 cut(s) | 430 |
| BshFI | GGCC | 6 cut(s) | 329, 1116, 1807, 2148, 3268, 3630 |
| BshNI | GGYRCC | 2 cut(s) | 372, 927 |
| BshTI | ACCGGT | 1 cut(s) | 2762 |
| BsiHKAI | GWGCWC | 3 cut(s) | 511, 2707, 3529 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1356 |
| BsiSI | CCGG | 3 cut(s) | 6, 2763, 3647 |
| BslFI | GGGAC | 2 cut(s) | 498, 2459 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 318, 409, 413, 589, 2863, 3284 |
| BsmAI | GTCTC | 6 cut(s) | 711, 1711, 1814, 2090, 2391, 2985 |
| BsmFI | GGGAC | 2 cut(s) | 498, 2459 |
| BsmI | GAATGC | 2 cut(s) | 1319, 3294 |
| BsnI | GGCC | 6 cut(s) | 329, 1116, 1807, 2148, 3268, 3630 |
| Bso31I | GGTCTC | 1 cut(s) | 2985 |
| BsoBI | CYCGRG | 1 cut(s) | 1356 |
| Bsp119I | TTCGAA | 1 cut(s) | 3662 |
| Bsp120I | GGGCCC | 1 cut(s) | 327 |
| Bsp1286I | GDGCHC | 5 cut(s) | 331, 511, 2493, 2707, 3529 |
| Bsp1407I | TGTACA | 2 cut(s) | 750, 3202 |
| BspACI | CCGC | 3 cut(s) | 558, 882, 1325 |
| BspANI | GGCC | 6 cut(s) | 329, 1116, 1807, 2148, 3268, 3630 |
| BspFNI | CGCG | 1 cut(s) | 430 |
| BspLI | GGNNCC | 9 cut(s) | 329, 330, 374, 846, 929, 1743, 2490, 3412, 3516 |
| BspMI | ACCTGC | 2 cut(s) | 2582, 2603 |
| BspPI | GGATC | 7 cut(s) | 361, 386, 1819, 2128, 3509, 3522, 3711 |
| BspQI | GCTCTTC | 2 cut(s) | 1476, 1569 |
| BspT104I | TTCGAA | 1 cut(s) | 3662 |
| BspT107I | GGYRCC | 2 cut(s) | 372, 927 |
| BspTNI | GGTCTC | 1 cut(s) | 2985 |
| BsrDI | GCAATG | 2 cut(s) | 235, 632 |
| BsrFI | RCCGGY | 1 cut(s) | 2762 |
| BsrGI | TGTACA | 2 cut(s) | 750, 3202 |
| BsrI | ACTGG | 6 cut(s) | 1308, 1927, 2157, 3257, 3431, 3556 |
| BssAI | RCCGGY | 1 cut(s) | 2762 |
| BssECI | CCNNGG | 4 cut(s) | 407, 583, 1710, 3406 |
| BssNI | GRCGYC | 1 cut(s) | 928 |
| BssT1I | CCWWGG | 3 cut(s) | 407, 583, 1710 |
| Bst2UI | CCWGG | 3 cut(s) | 1809, 2577, 3408 |
| Bst6I | CTCTTC | 9 cut(s) | 714, 720, 1245, 1260, 1334, 1476, 1539, 1569, 1906 |
| BstACI | GRCGYC | 1 cut(s) | 928 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 783 |
| BstAUI | TGTACA | 2 cut(s) | 750, 3202 |
| BstBAI | YACGTR | 2 cut(s) | 512, 1826 |
| BstBI | TTCGAA | 1 cut(s) | 3662 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 316, 2861 |
| BstF5I | GGATG | 9 cut(s) | 403, 723, 1276, 1312, 2220, 2315, 2470, 2677, 2912 |
| BstFNI | CGCG | 1 cut(s) | 430 |
| BstH2I | RGCGCY | 2 cut(s) | 835, 931 |
| BstHHI | GCGC | 3 cut(s) | 834, 930, 1581 |
| BstMAI | GTCTC | 6 cut(s) | 711, 1711, 1814, 2090, 2391, 2985 |
| BstNI | CCWGG | 3 cut(s) | 1809, 2577, 3408 |
| BstSCI | CCNGG | 5 cut(s) | 4, 1807, 2575, 3406, 3646 |
| BstSFI | CTRYAG | 1 cut(s) | 1174 |
| BstSLI | GKGCMC | 2 cut(s) | 331, 511 |
| BstUI | CGCG | 1 cut(s) | 430 |
| BstV1I | GCAGC | 8 cut(s) | 839, 1363, 1748, 2256, 2284, 3259, 3391, 3782 |
| BstV2I | GAAGAC | 1 cut(s) | 1875 |
| BstX2I | RGATCY | 5 cut(s) | 391, 1060, 1811, 2063, 3514 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 3002, 3264, 3626 |
| BstYI | RGATCY | 5 cut(s) | 391, 1060, 1811, 2063, 3514 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1094 |
| BsuI | GTATCC | 3 cut(s) | 2308, 2508, 3381 |
| BsuRI | GGCC | 6 cut(s) | 329, 1116, 1807, 2148, 3268, 3630 |
| BtgZI | GCGATG | 1 cut(s) | 114 |
| BtsCI | GGATG | 9 cut(s) | 403, 723, 1276, 1312, 2220, 2315, 2470, 2677, 2912 |
| BtsI | GCAGTG | 1 cut(s) | 639 |
| BveI | ACCTGC | 2 cut(s) | 2582, 2603 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2342 |
| CfoI | GCGC | 3 cut(s) | 834, 930, 1581 |
| Cfr10I | RCCGGY | 1 cut(s) | 2762 |
| Cfr13I | GGNCC | 9 cut(s) | 84, 327, 328, 2147, 2174, 3062, 3224, 3323, 3629 |
| CseI | GACGC | 1 cut(s) | 454 |
| CsiI | ACCWGGT | 1 cut(s) | 2575 |
| Csp6I | GTAC | 8 cut(s) | 214, 751, 914, 954, 2771, 2826, 3203, 3501 |
| CspAI | ACCGGT | 1 cut(s) | 2762 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 76, 111 |
| CviQI | GTAC | 8 cut(s) | 214, 751, 914, 954, 2771, 2826, 3203, 3501 |
| DinI | GGCGCC | 1 cut(s) | 929 |
| DraI | TTTAAA | 2 cut(s) | 1860, 3693 |
| DraIII | CACNNNGTG | 1 cut(s) | 2579 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2172, 2816 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2172, 2816 |
| EaeI | YGGCCR | 1 cut(s) | 1114 |
| Eam1104I | CTCTTC | 9 cut(s) | 714, 720, 1245, 1260, 1334, 1476, 1539, 1569, 1906 |
| EarI | CTCTTC | 9 cut(s) | 714, 720, 1245, 1260, 1334, 1476, 1539, 1569, 1906 |
| Ecl136II | GAGCTC | 1 cut(s) | 3527 |
| Eco130I | CCWWGG | 3 cut(s) | 407, 583, 1710 |
| Eco147I | AGGCCT | 1 cut(s) | 1807 |
| Eco24I | GRGCYC | 3 cut(s) | 331, 2493, 3529 |
| Eco31I | GGTCTC | 1 cut(s) | 2985 |
| Eco32I | GATATC | 1 cut(s) | 3462 |
| Eco47I | GGWCC | 5 cut(s) | 84, 2174, 3062, 3224, 3323 |
| Eco47III | AGCGCT | 1 cut(s) | 833 |
| Eco53kI | GAGCTC | 1 cut(s) | 3527 |
| Eco57I | CTGAAG | 3 cut(s) | 848, 1269, 1695 |
| Eco72I | CACGTG | 2 cut(s) | 512, 1826 |
| Eco81I | CCTNAGG | 1 cut(s) | 1094 |
| Eco88I | CYCGRG | 1 cut(s) | 1356 |
| EcoICRI | GAGCTC | 1 cut(s) | 3527 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 316, 2861 |
| EcoO109I | RGGNCCY | 3 cut(s) | 327, 328, 3224 |
| EcoRII | CCWGG | 3 cut(s) | 1807, 2575, 3406 |
| EcoRV | GATATC | 1 cut(s) | 3462 |
| EcoT14I | CCWWGG | 3 cut(s) | 407, 583, 1710 |
| EcoT22I | ATGCAT | 4 cut(s) | 553, 1150, 1999, 3192 |
| EcoT38I | GRGCYC | 3 cut(s) | 331, 2493, 3529 |
| EgeI | GGCGCC | 1 cut(s) | 929 |
| EheI | GGCGCC | 1 cut(s) | 929 |
| ErhI | CCWWGG | 3 cut(s) | 407, 583, 1710 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 610, 642, 2947, 2979 |
| FaqI | GGGAC | 2 cut(s) | 498, 2459 |
| FauI | CCCGC | 1 cut(s) | 551 |
| FbaI | TGATCA | 2 cut(s) | 1789, 3718 |
| FblI | GTMKAC | 1 cut(s) | 2164 |
| Fnu4HI | GCNGC | 8 cut(s) | 853, 1377, 1762, 2245, 2298, 3273, 3380, 3771 |
| FokI | GGATG | 9 cut(s) | 390, 730, 1283, 1319, 2227, 2322, 2457, 2684, 2899 |
| FriOI | GRGCYC | 3 cut(s) | 331, 2493, 3529 |
| Fsp4HI | GCNGC | 8 cut(s) | 853, 1377, 1762, 2245, 2298, 3273, 3380, 3771 |
| GlaI | GCGC | 3 cut(s) | 833, 929, 1580 |
| GluI | GCNGC | 8 cut(s) | 853, 1377, 1762, 2245, 2298, 3273, 3380, 3771 |
| GsuI | CTGGAG | 4 cut(s) | 104, 3261, 3543, 3573 |
| HaeII | RGCGCY | 2 cut(s) | 835, 931 |
| HaeIII | GGCC | 6 cut(s) | 329, 1116, 1807, 2148, 3268, 3630 |
| HapII | CCGG | 3 cut(s) | 6, 2763, 3647 |
| HgaI | GACGC | 1 cut(s) | 454 |
| HhaI | GCGC | 3 cut(s) | 834, 930, 1581 |
| Hin1I | GRCGYC | 1 cut(s) | 928 |
| Hin6I | GCGC | 3 cut(s) | 832, 928, 1579 |
| HinP1I | GCGC | 3 cut(s) | 832, 928, 1579 |
| HincII | GTYRAC | 2 cut(s) | 2165, 2677 |
| HindII | GTYRAC | 2 cut(s) | 2165, 2677 |
| HindIII | AAGCTT | 2 cut(s) | 161, 1535 |
| HpaII | CCGG | 3 cut(s) | 6, 2763, 3647 |
| HphI | GGTGA | 9 cut(s) | 135, 1894, 1907, 1928, 2565, 2591, 2606, 2627, 3239 |
| Hpy166II | GTNNAC | 7 cut(s) | 509, 1171, 2165, 2184, 2677, 3161, 3399 |
| Hpy8I | GTNNAC | 7 cut(s) | 509, 1171, 2165, 2184, 2677, 3161, 3399 |
| Hpy99I | CGWCG | 2 cut(s) | 49, 1962 |
| HpyCH4IV | ACGT | 3 cut(s) | 511, 529, 1825 |
| HpySE526I | ACGT | 3 cut(s) | 511, 529, 1825 |
| Hsp92I | GRCGYC | 1 cut(s) | 928 |
| HspAI | GCGC | 3 cut(s) | 832, 928, 1579 |
| KasI | GGCGCC | 1 cut(s) | 927 |
| Ksp22I | TGATCA | 2 cut(s) | 1789, 3718 |
| LguI | GCTCTTC | 2 cut(s) | 1476, 1569 |
| Lsp1109I | GCAGC | 8 cut(s) | 839, 1363, 1748, 2256, 2284, 3259, 3391, 3782 |
| MabI | ACCWGGT | 1 cut(s) | 2575 |
| MaeII | ACGT | 3 cut(s) | 511, 529, 1825 |
| MflI | RGATCY | 5 cut(s) | 391, 1060, 1811, 2063, 3514 |
| MhlI | GDGCHC | 5 cut(s) | 331, 511, 2493, 2707, 3529 |
| MluI | ACGCGT | 1 cut(s) | 428 |
| Mly113I | GGCGCC | 1 cut(s) | 928 |
| MlyI | GAGTC | 6 cut(s) | 1351, 2078, 2092, 2510, 2780, 3044 |
| MmeI | TCCRAC | 3 cut(s) | 554, 961, 1168 |
| Mph1103I | ATGCAT | 4 cut(s) | 553, 1150, 1999, 3192 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1167 |
| MseI | TTAA | 7 cut(s) | 1073, 1859, 1967, 2135, 2775, 3150, 3692 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1734, 1878, 2025, 2666, 3624 |
| MspA1I | CMGCKG | 1 cut(s) | 2247 |
| MspI | CCGG | 3 cut(s) | 6, 2763, 3647 |
| MspR9I | CCNGG | 5 cut(s) | 6, 1809, 2577, 3408, 3648 |
| Mva1269I | GAATGC | 2 cut(s) | 1319, 3294 |
| MvaI | CCWGG | 3 cut(s) | 1809, 2577, 3408 |
| MvnI | CGCG | 1 cut(s) | 430 |
| NarI | GGCGCC | 1 cut(s) | 928 |
| NciI | CCSGG | 2 cut(s) | 6, 3648 |
| NlaIV | GGNNCC | 9 cut(s) | 329, 330, 374, 846, 929, 1743, 2490, 3412, 3516 |
| NmuCI | GTSAC | 3 cut(s) | 2219, 2571, 2886 |
| NsiI | ATGCAT | 4 cut(s) | 553, 1150, 1999, 3192 |
| NspV | TTCGAA | 1 cut(s) | 3662 |
| PaeI | GCATGC | 4 cut(s) | 1083, 1247, 3178, 3367 |
| PaeR7I | CTCGAG | 1 cut(s) | 1356 |
| PaqCI | CACCTGC | 2 cut(s) | 2582, 2603 |
| PceI | AGGCCT | 1 cut(s) | 1807 |
| PciI | ACATGT | 1 cut(s) | 210 |
| PciSI | GCTCTTC | 2 cut(s) | 1476, 1569 |
| PctI | GAATGC | 2 cut(s) | 1319, 3294 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1167 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 589, 3284 |
| PinAI | ACCGGT | 1 cut(s) | 2762 |
| PkrI | GCNGC | 8 cut(s) | 854, 1378, 1763, 2246, 2299, 3274, 3381, 3772 |
| PleI | GAGTC | 6 cut(s) | 1350, 2077, 2092, 2510, 2780, 3043 |
| PluTI | GGCGCC | 1 cut(s) | 931 |
| PmaCI | CACGTG | 2 cut(s) | 512, 1826 |
| PmlI | CACGTG | 2 cut(s) | 512, 1826 |
| PpsI | GAGTC | 6 cut(s) | 1350, 2077, 2092, 2510, 2780, 3043 |
| Ppu21I | YACGTR | 2 cut(s) | 512, 1826 |
| PpuMI | RGGWCCY | 1 cut(s) | 3224 |
| PscI | ACATGT | 1 cut(s) | 210 |
| Psp124BI | GAGCTC | 1 cut(s) | 3529 |
| Psp5II | RGGWCCY | 1 cut(s) | 3224 |
| Psp6I | CCWGG | 3 cut(s) | 1807, 2575, 3406 |
| PspCI | CACGTG | 2 cut(s) | 512, 1826 |
| PspGI | CCWGG | 3 cut(s) | 1807, 2575, 3406 |
| PspN4I | GGNNCC | 9 cut(s) | 329, 330, 374, 846, 929, 1743, 2490, 3412, 3516 |
| PspOMI | GGGCCC | 1 cut(s) | 327 |
| PspPI | GGNCC | 9 cut(s) | 84, 327, 328, 2147, 2174, 3062, 3224, 3323, 3629 |
| PspPPI | RGGWCCY | 1 cut(s) | 3224 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2342 |
| PsuI | RGATCY | 5 cut(s) | 391, 1060, 1811, 2063, 3514 |
| PvuII | CAGCTG | 1 cut(s) | 2247 |
| RsaI | GTAC | 8 cut(s) | 215, 752, 915, 955, 2772, 2827, 3204, 3502 |
| RsaNI | GTAC | 8 cut(s) | 214, 751, 914, 954, 2771, 2826, 3203, 3501 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1734, 1878, 2025, 2666, 3624 |
| SacI | GAGCTC | 1 cut(s) | 3529 |
| SalI | GTCGAC | 1 cut(s) | 2163 |
| SapI | GCTCTTC | 2 cut(s) | 1476, 1569 |
| SaqAI | TTAA | 7 cut(s) | 1073, 1859, 1967, 2135, 2775, 3150, 3692 |
| SatI | GCNGC | 8 cut(s) | 853, 1377, 1762, 2245, 2298, 3273, 3380, 3771 |
| Sau96I | GGNCC | 9 cut(s) | 84, 327, 328, 2147, 2174, 3062, 3224, 3323, 3629 |
| ScaI | AGTACT | 1 cut(s) | 2827 |
| SchI | GAGTC | 6 cut(s) | 1351, 2078, 2092, 2510, 2780, 3044 |
| ScrFI | CCNGG | 5 cut(s) | 6, 1809, 2577, 3408, 3648 |
| SduI | GDGCHC | 5 cut(s) | 331, 511, 2493, 2707, 3529 |
| SexAI | ACCWGGT | 1 cut(s) | 2575 |
| SfcI | CTRYAG | 1 cut(s) | 1174 |
| SfoI | GGCGCC | 1 cut(s) | 929 |
| Sfr274I | CTCGAG | 1 cut(s) | 1356 |
| SfuI | TTCGAA | 1 cut(s) | 3662 |
| SinI | GGWCC | 5 cut(s) | 84, 2174, 3062, 3224, 3323 |
| SlaI | CTCGAG | 1 cut(s) | 1356 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1734, 1878, 2025, 2666, 3624 |
| SmlI | CTYRAG | 4 cut(s) | 479, 835, 1356, 2530 |
| SmoI | CTYRAG | 4 cut(s) | 479, 835, 1356, 2530 |
| SphI | GCATGC | 4 cut(s) | 1083, 1247, 3178, 3367 |
| SseBI | AGGCCT | 1 cut(s) | 1807 |
| SsiI | CCGC | 3 cut(s) | 558, 882, 1325 |
| SspDI | GGCGCC | 1 cut(s) | 927 |
| SstI | GAGCTC | 1 cut(s) | 3529 |
| StuI | AGGCCT | 1 cut(s) | 1807 |
| StyD4I | CCNGG | 5 cut(s) | 4, 1807, 2575, 3406, 3646 |
| StyI | CCWWGG | 3 cut(s) | 407, 583, 1710 |
| TaiI | ACGT | 3 cut(s) | 514, 532, 1828 |
| TaqI | TCGA | 7 cut(s) | 154, 700, 1357, 2072, 2164, 3042, 3662 |
| TaqII | GACCGA | 1 cut(s) | 2031 |
| TatI | WGTACW | 7 cut(s) | 213, 750, 913, 2770, 2825, 3202, 3500 |
| Tru1I | TTAA | 7 cut(s) | 1073, 1859, 1967, 2135, 2775, 3150, 3692 |
| Tru9I | TTAA | 7 cut(s) | 1073, 1859, 1967, 2135, 2775, 3150, 3692 |
| TseFI | GTSAC | 3 cut(s) | 2219, 2571, 2886 |
| TseI | GCWGC | 8 cut(s) | 852, 1376, 1761, 2244, 2297, 3272, 3379, 3770 |
| Tsp45I | GTSAC | 3 cut(s) | 2219, 2571, 2886 |
| TspGWI | ACGGA | 4 cut(s) | 90, 1975, 3403, 3695 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 589, 3284 |
| VneI | GTGCAC | 1 cut(s) | 507 |
| VpaK11BI | GGWCC | 5 cut(s) | 84, 2174, 3062, 3224, 3323 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 316, 2861 |
| XapI | RAATTY | 4 cut(s) | 1013, 1361, 2481, 3349 |
| XbaI | TCTAGA | 3 cut(s) | 221, 1057, 1540 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 35, 410, 2665 |
| XhoI | CTCGAG | 1 cut(s) | 1356 |
| XmiI | GTMKAC | 1 cut(s) | 2164 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1167 |
| ZrmI | AGTACT | 1 cut(s) | 2827 |
| Zsp2I | ATGCAT | 4 cut(s) | 553, 1150, 1999, 3192 |