No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58050 AT3G58050 |
| fragaria_vesca | FvH4_6g21890 |
| malus_domestica | MD12G1054800.v1.1 MD14G1054100.v1.1 |
| prunus_persica | Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 Prupe.7G081000_v2.0.a1 |
| pyrus_communis | pycom12g04770 pycom14g04460 |
| rosa_chinensis | RchiOBHm_Chr3g0479241 |
| rosa_laevigata | RLG00000023591 |
| rosa_multiflora | Rmu_sc0002978.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00402500 |
| rosa_rugosa | Rorug03G0172400 Rorug03G0173000 Rorug03G0173100 Rorug03G0173200 |
| rosa_samantha | Rh3AG224200 Rh3AG224500 Rh3BG257100 Rh3CG252700 Rh3DG248900 |
| rosa_wichuraiana | Rw3G020090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 287 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2169 |
| Acc36I | ACCTGC | 1 cut(s) | 287 |
| AccB1I | GGYRCC | 2 cut(s) | 369, 924 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 586, 3047, 3239 |
| AccI | GTMKAC | 1 cut(s) | 2161 |
| AccII | CGCG | 2 cut(s) | 96, 3377 |
| AciI | CCGC | 5 cut(s) | 678, 835, 3224, 3375, 3377 |
| AclWI | GGATC | 3 cut(s) | 383, 2125, 2771 |
| AcoI | YGGCCR | 1 cut(s) | 3221 |
| AcsI | RAATTY | 9 cut(s) | 1010, 1358, 1818, 1859, 1967, 2475, 2637, 3423, 3625 |
| AcuI | CTGAAG | 2 cut(s) | 845, 1266 |
| AcvI | CACGTG | 2 cut(s) | 428, 509 |
| AcyI | GRCGYC | 2 cut(s) | 925, 2017 |
| AfaI | GTAC | 9 cut(s) | 215, 352, 749, 912, 1750, 1830, 1918, 2716, 3159 |
| AfeI | AGCGCT | 1 cut(s) | 830 |
| AflII | CTTAAG | 1 cut(s) | 2539 |
| AflIII | ACRYGT | 4 cut(s) | 210, 425, 623, 2284 |
| AjnI | CCWGG | 3 cut(s) | 4, 641, 1804 |
| Alw21I | GWGCWC | 4 cut(s) | 508, 2258, 2725, 3529 |
| Alw26I | GTCTC | 4 cut(s) | 334, 708, 2087, 2306 |
| Alw44I | GTGCAC | 1 cut(s) | 504 |
| AlwI | GGATC | 3 cut(s) | 383, 2125, 2771 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 944, 2339, 2528 |
| Ama87I | CYCGRG | 1 cut(s) | 1353 |
| Aor51HI | AGCGCT | 1 cut(s) | 830 |
| AoxI | GGCC | 6 cut(s) | 1051, 1802, 2143, 2414, 2559, 3221 |
| ApaLI | GTGCAC | 1 cut(s) | 504 |
| ApoI | RAATTY | 9 cut(s) | 1010, 1358, 1818, 1859, 1967, 2475, 2637, 3423, 3625 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1859, 1891, 2412, 2444, 2676, 2708 |
| AseI | ATTAAT | 2 cut(s) | 2112, 3303 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1362 |
| AspLEI | GCGC | 3 cut(s) | 831, 927, 2624 |
| AspS9I | GGNCC | 7 cut(s) | 84, 675, 1738, 2144, 2171, 2415, 3593 |
| AsuHPI | GGTGA | 8 cut(s) | 135, 1078, 1796, 2093, 2609, 2624, 2645, 3194 |
| AsuNHI | GCTAGC | 2 cut(s) | 3104, 3281 |
| AvaI | CYCGRG | 1 cut(s) | 1353 |
| AvaII | GGWCC | 5 cut(s) | 84, 675, 1738, 2171, 3593 |
| AxyI | CCTNAGG | 1 cut(s) | 1091 |
| BaeGI | GKGCMC | 1 cut(s) | 508 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 648, 681 |
| BanI | GGYRCC | 2 cut(s) | 369, 924 |
| BanII | GRGCYC | 1 cut(s) | 2487 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2995, 3027 |
| BbrPI | CACGTG | 2 cut(s) | 428, 509 |
| BbsI | GAAGAC | 1 cut(s) | 3029 |
| Bbv12I | GWGCWC | 4 cut(s) | 508, 2258, 2725, 3529 |
| BceAI | ACGGC | 1 cut(s) | 3235 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2348, 2382 |
| BciT130I | CCWGG | 3 cut(s) | 6, 643, 1806 |
| BciVI | GTATCC | 2 cut(s) | 1984, 2517 |
| BclI | TGATCA | 1 cut(s) | 3694 |
| BcoDI | GTCTC | 4 cut(s) | 334, 708, 2087, 2306 |
| BfmI | CTRYAG | 1 cut(s) | 1171 |
| BfoI | RGCGCY | 2 cut(s) | 832, 928 |
| BfrI | CTTAAG | 1 cut(s) | 2539 |
| BfuAI | ACCTGC | 1 cut(s) | 287 |
| BfuI | GTATCC | 2 cut(s) | 1984, 2517 |
| BglII | AGATCT | 1 cut(s) | 2060 |
| BlpI | GCTNAGC | 1 cut(s) | 10 |
| Bme1390I | CCNGG | 3 cut(s) | 6, 643, 1806 |
| Bme18I | GGWCC | 5 cut(s) | 84, 675, 1738, 2171, 3593 |
| BmeT110I | CYCGRG | 1 cut(s) | 1353 |
| BmgT120I | GGNCC | 7 cut(s) | 84, 675, 1738, 2144, 2171, 2415, 3593 |
| BmiI | GGNNCC | 9 cut(s) | 371, 843, 926, 1669, 1740, 2484, 3115, 3381, 3595 |
| BmrFI | CCNGG | 3 cut(s) | 6, 643, 1806 |
| BmsI | GCATC | 9 cut(s) | 100, 215, 535, 1360, 1455, 2029, 2733, 2890, 3132 |
| BmtI | GCTAGC | 2 cut(s) | 3108, 3285 |
| BpiI | GAAGAC | 1 cut(s) | 3029 |
| BpmI | CTGGAG | 2 cut(s) | 104, 2082 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 1 cut(s) | 461 |
| BsaAI | YACGTR | 2 cut(s) | 428, 509 |
| BsaHI | GRCGYC | 2 cut(s) | 925, 2017 |
| BsaI | GGTCTC | 2 cut(s) | 334, 2306 |
| BsaJI | CCNNGG | 8 cut(s) | 404, 580, 1278, 2487, 2510, 3189, 3289, 3375 |
| BsaWI | WCCGGW | 1 cut(s) | 2725 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 47, 77, 3401, 3431 |
| Bse118I | RCCGGY | 1 cut(s) | 2019 |
| Bse1I | ACTGG | 2 cut(s) | 3212, 3490 |
| Bse21I | CCTNAGG | 1 cut(s) | 1091 |
| Bse3DI | GCAATG | 3 cut(s) | 235, 2971, 3757 |
| BseBI | CCWGG | 3 cut(s) | 6, 643, 1806 |
| BseDI | CCNNGG | 8 cut(s) | 404, 580, 1278, 2487, 2510, 3189, 3289, 3375 |
| BseMI | GCAATG | 3 cut(s) | 235, 2971, 3757 |
| BseMII | CTCAG | 8 cut(s) | 181, 1082, 1113, 2055, 2204, 2535, 2901, 3327 |
| BseNI | ACTGG | 2 cut(s) | 3212, 3490 |
| BseRI | GAGGAG | 6 cut(s) | 55, 1227, 1559, 1600, 2774, 3425 |
| BseSI | GKGCMC | 1 cut(s) | 508 |
| BseYI | CCCAGC | 2 cut(s) | 2307, 3117 |
| BsgI | GTGCAG | 3 cut(s) | 315, 835, 2695 |
| Bsh1236I | CGCG | 2 cut(s) | 96, 3377 |
| BshFI | GGCC | 6 cut(s) | 1053, 1804, 2145, 2416, 2561, 3223 |
| BshNI | GGYRCC | 2 cut(s) | 369, 924 |
| BsiHKAI | GWGCWC | 4 cut(s) | 508, 2258, 2725, 3529 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1353 |
| BsiSI | CCGG | 2 cut(s) | 2020, 2726 |
| BslFI | GGGAC | 8 cut(s) | 35, 457, 964, 2453, 2849, 3067, 3403, 3579 |
| BsmAI | GTCTC | 4 cut(s) | 334, 708, 2087, 2306 |
| BsmFI | GGGAC | 8 cut(s) | 35, 457, 964, 2453, 2849, 3067, 3403, 3579 |
| BsmI | GAATGC | 2 cut(s) | 1316, 2940 |
| BsnI | GGCC | 6 cut(s) | 1053, 1804, 2145, 2416, 2561, 3223 |
| Bso31I | GGTCTC | 2 cut(s) | 334, 2306 |
| BsoBI | CYCGRG | 1 cut(s) | 1353 |
| Bsp1286I | GDGCHC | 5 cut(s) | 508, 2258, 2487, 2725, 3529 |
| Bsp1407I | TGTACA | 4 cut(s) | 747, 1828, 2714, 3157 |
| Bsp143I | GATC | 9 cut(s) | 320, 388, 1057, 1657, 2060, 2117, 2776, 3679, 3694 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 10 |
| Bsp19I | CCATGG | 3 cut(s) | 1278, 2487, 3189 |
| Bsp68I | TCGCGA | 1 cut(s) | 96 |
| BspACI | CCGC | 5 cut(s) | 678, 835, 3224, 3375, 3377 |
| BspANI | GGCC | 6 cut(s) | 1053, 1804, 2145, 2416, 2561, 3223 |
| BspCNI | CTCAG | 8 cut(s) | 180, 1083, 1114, 2056, 2205, 2534, 2900, 3326 |
| BspFNI | CGCG | 2 cut(s) | 96, 3377 |
| BspLI | GGNNCC | 9 cut(s) | 371, 843, 926, 1669, 1740, 2484, 3115, 3381, 3595 |
| BspMAI | CTGCAG | 1 cut(s) | 1175 |
| BspMI | ACCTGC | 1 cut(s) | 287 |
| BspOI | GCTAGC | 2 cut(s) | 3108, 3285 |
| BspPI | GGATC | 3 cut(s) | 383, 2125, 2771 |
| BspT107I | GGYRCC | 2 cut(s) | 369, 924 |
| BspTI | CTTAAG | 1 cut(s) | 2539 |
| BspTNI | GGTCTC | 2 cut(s) | 334, 2306 |
| BsrDI | GCAATG | 3 cut(s) | 235, 2971, 3757 |
| BsrFI | RCCGGY | 1 cut(s) | 2019 |
| BsrGI | TGTACA | 4 cut(s) | 747, 1828, 2714, 3157 |
| BsrI | ACTGG | 2 cut(s) | 3212, 3490 |
| BssAI | RCCGGY | 1 cut(s) | 2019 |
| BssECI | CCNNGG | 8 cut(s) | 404, 580, 1278, 2487, 2510, 3189, 3289, 3375 |
| BssMI | GATC | 9 cut(s) | 320, 388, 1057, 1657, 2060, 2117, 2776, 3679, 3694 |
| BssNI | GRCGYC | 2 cut(s) | 925, 2017 |
| BssT1I | CCWWGG | 6 cut(s) | 404, 580, 1278, 2487, 3189, 3289 |
| Bst2UI | CCWGG | 3 cut(s) | 6, 643, 1806 |
| Bst4CI | ACNGT | 6 cut(s) | 350, 503, 946, 1381, 1933, 3566 |
| Bst6I | CTCTTC | 7 cut(s) | 711, 717, 1257, 1331, 1536, 2993, 3639 |
| BstACI | GRCGYC | 2 cut(s) | 925, 2017 |
| BstAFI | CTTAAG | 1 cut(s) | 2539 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 780, 3130 |
| BstAUI | TGTACA | 4 cut(s) | 747, 1828, 2714, 3157 |
| BstBAI | YACGTR | 2 cut(s) | 428, 509 |
| BstDSI | CCRYGG | 4 cut(s) | 1278, 2487, 3189, 3375 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2828 |
| BstFNI | CGCG | 2 cut(s) | 96, 3377 |
| BstH2I | RGCGCY | 2 cut(s) | 832, 928 |
| BstHHI | GCGC | 3 cut(s) | 831, 927, 2624 |
| BstKTI | GATC | 9 cut(s) | 323, 391, 1060, 1660, 2063, 2120, 2779, 3682, 3697 |
| BstMAI | GTCTC | 4 cut(s) | 334, 708, 2087, 2306 |
| BstMBI | GATC | 9 cut(s) | 320, 388, 1057, 1657, 2060, 2117, 2776, 3679, 3694 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 225, 780, 820, 1250, 2253, 2558, 2820, 3130 |
| BstNI | CCWGG | 3 cut(s) | 6, 643, 1806 |
| BstSCI | CCNGG | 3 cut(s) | 4, 641, 1804 |
| BstSFI | CTRYAG | 1 cut(s) | 1171 |
| BstSLI | GKGCMC | 1 cut(s) | 508 |
| BstUI | CGCG | 2 cut(s) | 96, 3377 |
| BstV2I | GAAGAC | 1 cut(s) | 3029 |
| BstX2I | RGATCY | 1 cut(s) | 2060 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3219, 3590 |
| BstYI | RGATCY | 1 cut(s) | 2060 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1091 |
| BsuI | GTATCC | 2 cut(s) | 1984, 2517 |
| BsuRI | GGCC | 6 cut(s) | 1053, 1804, 2145, 2416, 2561, 3223 |
| BtgI | CCRYGG | 4 cut(s) | 1278, 2487, 3189, 3375 |
| BtgZI | GCGATG | 1 cut(s) | 77 |
| BtsI | GCAGTG | 3 cut(s) | 636, 1168, 2683 |
| BtsIMutI | CAGTG | 7 cut(s) | 40, 508, 636, 942, 1119, 1168, 2683 |
| BtuMI | TCGCGA | 1 cut(s) | 96 |
| BveI | ACCTGC | 1 cut(s) | 287 |
| CaiI | CAGNNNCTG | 3 cut(s) | 944, 2339, 2528 |
| CfoI | GCGC | 3 cut(s) | 831, 927, 2624 |
| Cfr10I | RCCGGY | 1 cut(s) | 2019 |
| Cfr13I | GGNCC | 7 cut(s) | 84, 675, 1738, 2144, 2171, 2415, 3593 |
| Cfr42I | CCGCGG | 1 cut(s) | 3378 |
| CseI | GACGC | 2 cut(s) | 2025, 3498 |
| Csp6I | GTAC | 9 cut(s) | 214, 351, 748, 911, 1749, 1829, 1917, 2715, 3158 |
| CviQI | GTAC | 9 cut(s) | 214, 351, 748, 911, 1749, 1829, 1917, 2715, 3158 |
| DinI | GGCGCC | 1 cut(s) | 926 |
| DpnI | GATC | 9 cut(s) | 322, 390, 1059, 1659, 2062, 2119, 2778, 3681, 3696 |
| DpnII | GATC | 9 cut(s) | 320, 388, 1057, 1657, 2060, 2117, 2776, 3679, 3694 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2169 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2169 |
| EaeI | YGGCCR | 1 cut(s) | 3221 |
| Eam1104I | CTCTTC | 7 cut(s) | 711, 717, 1257, 1331, 1536, 2993, 3639 |
| EarI | CTCTTC | 7 cut(s) | 711, 717, 1257, 1331, 1536, 2993, 3639 |
| Eco130I | CCWWGG | 6 cut(s) | 404, 580, 1278, 2487, 3189, 3289 |
| Eco147I | AGGCCT | 1 cut(s) | 1804 |
| Eco24I | GRGCYC | 1 cut(s) | 2487 |
| Eco31I | GGTCTC | 2 cut(s) | 334, 2306 |
| Eco47I | GGWCC | 5 cut(s) | 84, 675, 1738, 2171, 3593 |
| Eco47III | AGCGCT | 1 cut(s) | 830 |
| Eco57I | CTGAAG | 2 cut(s) | 845, 1266 |
| Eco72I | CACGTG | 2 cut(s) | 428, 509 |
| Eco81I | CCTNAGG | 1 cut(s) | 1091 |
| Eco88I | CYCGRG | 1 cut(s) | 1353 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2828 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1738 |
| EcoRII | CCWGG | 3 cut(s) | 4, 641, 1804 |
| EcoT14I | CCWWGG | 6 cut(s) | 404, 580, 1278, 2487, 3189, 3289 |
| EcoT22I | ATGCAT | 2 cut(s) | 2942, 3703 |
| EcoT38I | GRGCYC | 1 cut(s) | 2487 |
| EgeI | GGCGCC | 1 cut(s) | 926 |
| EheI | GGCGCC | 1 cut(s) | 926 |
| ErhI | CCWWGG | 6 cut(s) | 404, 580, 1278, 2487, 3189, 3289 |
| FaqI | GGGAC | 8 cut(s) | 35, 457, 964, 2453, 2849, 3067, 3403, 3579 |
| FauNDI | CATATG | 1 cut(s) | 3555 |
| FbaI | TGATCA | 1 cut(s) | 3694 |
| FblI | GTMKAC | 1 cut(s) | 2161 |
| FriOI | GRGCYC | 1 cut(s) | 2487 |
| GlaI | GCGC | 3 cut(s) | 830, 926, 2623 |
| GsaI | CCCAGC | 2 cut(s) | 2311, 3121 |
| GsuI | CTGGAG | 2 cut(s) | 104, 2082 |
| HaeII | RGCGCY | 2 cut(s) | 832, 928 |
| HaeIII | GGCC | 6 cut(s) | 1053, 1804, 2145, 2416, 2561, 3223 |
| HapII | CCGG | 2 cut(s) | 2020, 2726 |
| HgaI | GACGC | 2 cut(s) | 2025, 3498 |
| HhaI | GCGC | 3 cut(s) | 831, 927, 2624 |
| Hin1I | GRCGYC | 2 cut(s) | 925, 2017 |
| Hin6I | GCGC | 3 cut(s) | 829, 925, 2622 |
| HinP1I | GCGC | 3 cut(s) | 829, 925, 2622 |
| HincII | GTYRAC | 2 cut(s) | 1157, 2162 |
| HindII | GTYRAC | 2 cut(s) | 1157, 2162 |
| HindIII | AAGCTT | 1 cut(s) | 1469 |
| HpaII | CCGG | 2 cut(s) | 2020, 2726 |
| HphI | GGTGA | 8 cut(s) | 135, 1078, 1796, 2093, 2609, 2624, 2645, 3194 |
| Hpy99I | CGWCG | 3 cut(s) | 101, 1868, 1959 |
| HpyCH4III | ACNGT | 6 cut(s) | 350, 503, 946, 1381, 1933, 3566 |
| HpyCH4IV | ACGT | 4 cut(s) | 427, 508, 526, 953 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 225, 780, 820, 1250, 2253, 2558, 2820, 3130 |
| HpySE526I | ACGT | 4 cut(s) | 427, 508, 526, 953 |
| Hsp92I | GRCGYC | 2 cut(s) | 925, 2017 |
| HspAI | GCGC | 3 cut(s) | 829, 925, 2622 |
| KasI | GGCGCC | 1 cut(s) | 924 |
| Ksp22I | TGATCA | 1 cut(s) | 3694 |
| KspI | CCGCGG | 1 cut(s) | 3378 |
| Kzo9I | GATC | 9 cut(s) | 320, 388, 1057, 1657, 2060, 2117, 2776, 3679, 3694 |
| LweI | GCATC | 9 cut(s) | 100, 215, 535, 1360, 1455, 2029, 2733, 2890, 3132 |
| MaeII | ACGT | 4 cut(s) | 427, 508, 526, 953 |
| MaeIII | GTNAC | 8 cut(s) | 141, 234, 1198, 2216, 2516, 2533, 2597, 3194 |
| MalI | GATC | 9 cut(s) | 322, 390, 1059, 1659, 2062, 2119, 2778, 3681, 3696 |
| MboI | GATC | 9 cut(s) | 320, 388, 1057, 1657, 2060, 2117, 2776, 3679, 3694 |
| MflI | RGATCY | 1 cut(s) | 2060 |
| MhlI | GDGCHC | 5 cut(s) | 508, 2258, 2487, 2725, 3529 |
| Mly113I | GGCGCC | 1 cut(s) | 925 |
| MlyI | GAGTC | 4 cut(s) | 1348, 1494, 2075, 2089 |
| MmeI | TCCRAC | 3 cut(s) | 551, 958, 3257 |
| Mph1103I | ATGCAT | 2 cut(s) | 2942, 3703 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1362 |
| MseI | TTAA | 9 cut(s) | 440, 1041, 1070, 1964, 2055, 2112, 2132, 2540, 3303 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2002, 3588 |
| MspA1I | CMGCKG | 2 cut(s) | 2244, 3377 |
| MspCI | CTTAAG | 1 cut(s) | 2539 |
| MspI | CCGG | 2 cut(s) | 2020, 2726 |
| MspR9I | CCNGG | 3 cut(s) | 6, 643, 1806 |
| Mva1269I | GAATGC | 2 cut(s) | 1316, 2940 |
| MvaI | CCWGG | 3 cut(s) | 6, 643, 1806 |
| MvnI | CGCG | 2 cut(s) | 96, 3377 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 225, 780, 820, 1250, 2253, 2558, 2820, 3130 |
| NarI | GGCGCC | 1 cut(s) | 925 |
| NcoI | CCATGG | 3 cut(s) | 1278, 2487, 3189 |
| NdeI | CATATG | 1 cut(s) | 3555 |
| NdeII | GATC | 9 cut(s) | 320, 388, 1057, 1657, 2060, 2117, 2776, 3679, 3694 |
| NheI | GCTAGC | 2 cut(s) | 3104, 3281 |
| NlaIV | GGNNCC | 9 cut(s) | 371, 843, 926, 1669, 1740, 2484, 3115, 3381, 3595 |
| NmeAIII | GCCGAG | 2 cut(s) | 133, 676 |
| NmuCI | GTSAC | 3 cut(s) | 141, 2216, 2597 |
| NruI | TCGCGA | 1 cut(s) | 96 |
| NsiI | ATGCAT | 2 cut(s) | 2942, 3703 |
| PaeI | GCATGC | 4 cut(s) | 1244, 3133, 3328, 3705 |
| PaeR7I | CTCGAG | 1 cut(s) | 1353 |
| PaqCI | CACCTGC | 1 cut(s) | 287 |
| PceI | AGGCCT | 1 cut(s) | 1804 |
| PciI | ACATGT | 3 cut(s) | 210, 623, 2284 |
| PctI | GAATGC | 2 cut(s) | 1316, 2940 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1362 |
| PflFI | GACNNNGTC | 1 cut(s) | 101 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 586, 3047, 3239 |
| PleI | GAGTC | 4 cut(s) | 1347, 1493, 2074, 2089 |
| PluTI | GGCGCC | 1 cut(s) | 928 |
| PmaCI | CACGTG | 2 cut(s) | 428, 509 |
| PmlI | CACGTG | 2 cut(s) | 428, 509 |
| PpsI | GAGTC | 4 cut(s) | 1347, 1493, 2074, 2089 |
| Ppu21I | YACGTR | 2 cut(s) | 428, 509 |
| PpuMI | RGGWCCY | 1 cut(s) | 1738 |
| PscI | ACATGT | 3 cut(s) | 210, 623, 2284 |
| PshBI | ATTAAT | 2 cut(s) | 2112, 3303 |
| Psp5II | RGGWCCY | 1 cut(s) | 1738 |
| Psp6I | CCWGG | 3 cut(s) | 4, 641, 1804 |
| PspCI | CACGTG | 2 cut(s) | 428, 509 |
| PspFI | CCCAGC | 2 cut(s) | 2307, 3117 |
| PspGI | CCWGG | 3 cut(s) | 4, 641, 1804 |
| PspN4I | GGNNCC | 9 cut(s) | 371, 843, 926, 1669, 1740, 2484, 3115, 3381, 3595 |
| PspPI | GGNCC | 7 cut(s) | 84, 675, 1738, 2144, 2171, 2415, 3593 |
| PspPPI | RGGWCCY | 1 cut(s) | 1738 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 516, 548 |
| PstI | CTGCAG | 1 cut(s) | 1175 |
| PstNI | CAGNNNCTG | 3 cut(s) | 944, 2339, 2528 |
| PsuI | RGATCY | 1 cut(s) | 2060 |
| PsyI | GACNNNGTC | 1 cut(s) | 101 |
| PvuII | CAGCTG | 1 cut(s) | 2244 |
| RruI | TCGCGA | 1 cut(s) | 96 |
| RsaI | GTAC | 9 cut(s) | 215, 352, 749, 912, 1750, 1830, 1918, 2716, 3159 |
| RsaNI | GTAC | 9 cut(s) | 214, 351, 748, 911, 1749, 1829, 1917, 2715, 3158 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2002, 3588 |
| SacII | CCGCGG | 1 cut(s) | 3378 |
| SalI | GTCGAC | 1 cut(s) | 2160 |
| SaqAI | TTAA | 9 cut(s) | 440, 1041, 1070, 1964, 2055, 2112, 2132, 2540, 3303 |
| Sau3AI | GATC | 9 cut(s) | 320, 388, 1057, 1657, 2060, 2117, 2776, 3679, 3694 |
| Sau96I | GGNCC | 7 cut(s) | 84, 675, 1738, 2144, 2171, 2415, 3593 |
| SchI | GAGTC | 4 cut(s) | 1348, 1494, 2075, 2089 |
| ScrFI | CCNGG | 3 cut(s) | 6, 643, 1806 |
| SduI | GDGCHC | 5 cut(s) | 508, 2258, 2487, 2725, 3529 |
| SfaNI | GCATC | 9 cut(s) | 100, 215, 535, 1360, 1455, 2029, 2733, 2890, 3132 |
| SfcI | CTRYAG | 1 cut(s) | 1171 |
| SfoI | GGCGCC | 1 cut(s) | 926 |
| Sfr274I | CTCGAG | 1 cut(s) | 1353 |
| Sfr303I | CCGCGG | 1 cut(s) | 3378 |
| SgrBI | CCGCGG | 1 cut(s) | 3378 |
| SinI | GGWCC | 5 cut(s) | 84, 675, 1738, 2171, 3593 |
| SlaI | CTCGAG | 1 cut(s) | 1353 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2002, 3588 |
| SmlI | CTYRAG | 3 cut(s) | 476, 1353, 2539 |
| SmoI | CTYRAG | 3 cut(s) | 476, 1353, 2539 |
| SphI | GCATGC | 4 cut(s) | 1244, 3133, 3328, 3705 |
| SseBI | AGGCCT | 1 cut(s) | 1804 |
| SsiI | CCGC | 5 cut(s) | 678, 835, 3224, 3375, 3377 |
| SspDI | GGCGCC | 1 cut(s) | 924 |
| StuI | AGGCCT | 1 cut(s) | 1804 |
| StyD4I | CCNGG | 3 cut(s) | 4, 641, 1804 |
| StyI | CCWWGG | 6 cut(s) | 404, 580, 1278, 2487, 3189, 3289 |
| TaaI | ACNGT | 6 cut(s) | 350, 503, 946, 1381, 1933, 3566 |
| TaiI | ACGT | 4 cut(s) | 430, 511, 529, 956 |
| TaqI | TCGA | 8 cut(s) | 565, 1354, 1863, 2069, 2161, 2682, 2741, 3185 |
| TatI | WGTACW | 5 cut(s) | 213, 747, 1828, 2714, 3157 |
| TauI | GCSGC | 1 cut(s) | 3226 |
| Tru1I | TTAA | 9 cut(s) | 440, 1041, 1070, 1964, 2055, 2112, 2132, 2540, 3303 |
| Tru9I | TTAA | 9 cut(s) | 440, 1041, 1070, 1964, 2055, 2112, 2132, 2540, 3303 |
| TscAI | CASTG | 7 cut(s) | 40, 508, 643, 949, 1126, 1175, 2683 |
| TseFI | GTSAC | 3 cut(s) | 141, 2216, 2597 |
| Tsp45I | GTSAC | 3 cut(s) | 141, 2216, 2597 |
| TspGWI | ACGGA | 3 cut(s) | 788, 1972, 3422 |
| TspRI | CASTG | 7 cut(s) | 40, 508, 643, 949, 1126, 1175, 2683 |
| Tth111I | GACNNNGTC | 1 cut(s) | 101 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 586, 3047, 3239 |
| Vha464I | CTTAAG | 1 cut(s) | 2539 |
| VneI | GTGCAC | 1 cut(s) | 504 |
| VpaK11BI | GGWCC | 5 cut(s) | 84, 675, 1738, 2171, 3593 |
| VspI | ATTAAT | 2 cut(s) | 2112, 3303 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2828 |
| XapI | RAATTY | 9 cut(s) | 1010, 1358, 1818, 1859, 1967, 2475, 2637, 3423, 3625 |
| XbaI | TCTAGA | 5 cut(s) | 221, 1366, 1516, 1537, 2450 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 35, 407, 1759 |
| XhoI | CTCGAG | 1 cut(s) | 1353 |
| XmiI | GTMKAC | 1 cut(s) | 2161 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1362 |
| Zsp2I | ATGCAT | 2 cut(s) | 2942, 3703 |