AT3G58150

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015835
Physical Location & Seq
Reverse (-)
21532813 .. 21534135
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58150.1

Sequence Viewer

Length: 585 bp
ATGAGCCAGCCGAAGTCTCTAGTTCAGCAGACCATGGTCCTCCCGCTTCTGAAGCTAGGAACCCTAGCTCTTCGAACTATCTGCAAACCCATCGCTAACCAGCTTAAGAAAGAAGCTGGTGTTAATCCCAAATTCCGTCAATTCATCATCAACATTGCACAGGCGAATCACAGATTTACTACAAAGTTACAAAGACGTGCTTCTGGTCGTATAACTGATGCAGTTATTCGCCCTTTGAACGAAGAGAGAGCTGTTCAAGCCGCTGCAGATCTTCTTGGGGAACTCTTTGCCTTCACGGTTGCAGGAGCTGCTCTTGTCTATGAAGTGCAGAGAAATGCCAGAGGAGAAGCGAAAAAAGAAGAGAAACGACAACAAGAACTAGCGGAATTCAGACGTAAACATGAGAAGATGGAGAACGAAATCGAAGAGATGAAACAAAGATGCTGTTTGCTTCATGAAGAGCTTTCTAAGCCGATTAATGAACAGCCTTCTAAGCCTCTTAATGAAGAGGTATCTAAGCCAAGAGGATTAGCTTGGCTTTACAACTACATGTGTTATCAGAATGCTGCTGAGAAAATAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

194

Amino Acids

22.26

Weight (kDa)

9.56

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 17 - 136 1.3e-40 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 261, 383
AcsI RAATTY 2 cut(s) 131, 386
AcuI CTGAAG 1 cut(s) 71
AflII CTTAAG 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 2 cut(s) 238, 257
AjiI CACGTC 1 cut(s) 197
AluBI AGCT 8 cut(s) 55, 68, 103, 116, 251, 308, 463, 533
AluI AGCT 8 cut(s) 55, 68, 103, 116, 251, 308, 463, 533
Alw26I GTCTC 1 cut(s) 21
AlwNI CAGNNNCTG 1 cut(s) 308
ApeKI GCWGC 3 cut(s) 263, 308, 566
ApoI RAATTY 2 cut(s) 131, 386
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 250, 295, 553
BccI CCATC 2 cut(s) 98, 403
BcgI CGANNNNNNTGC 4 cut(s) 63, 73, 97, 107
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 4 cut(s) 20, 56, 65, 380
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 104
BglII AGATCT 1 cut(s) 268
BisI GCNGC 4 cut(s) 261, 264, 309, 567
BlsI GCNGC 4 cut(s) 262, 265, 310, 568
Bme18I GGWCC 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 2 cut(s) 208, 431
BoxI GACNNNNGTC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 3 cut(s) 250, 295, 553
BsgI GTGCAG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 568
Bsp119I TTCGAA 1 cut(s) 73
Bsp143I GATC 1 cut(s) 268
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 44, 261, 383
BspCNI CTCAG 1 cut(s) 562
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 268
BspQI GCTCTTC 2 cut(s) 75, 453
BspT104I TTCGAA 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 6 cut(s) 75, 237, 354, 420, 453, 501
BstAFI CTTAAG 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 4 cut(s) 468, 492, 516, 570
BstDSI CCRYGG 1 cut(s) 33
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 5 cut(s) 52, 257, 308, 469, 493
BstNSI RCATGY 1 cut(s) 553
BstPAI GACNNNNGTC 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 250, 295, 553
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 76
BtrI CACGTC 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 308
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 4 cut(s) 34, 401, 455, 550
DdeI CTNAG 4 cut(s) 468, 492, 516, 570
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 6 cut(s) 75, 237, 354, 420, 453, 501
EarI CTCTTC 6 cut(s) 75, 237, 354, 420, 453, 501
Eco130I CCWWGG 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 4 cut(s) 37, 404, 458, 553
FaiI YATR 6 cut(s) 35, 212, 321, 402, 456, 551
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FatI CATG 4 cut(s) 33, 400, 454, 549
FauI CCCGC 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 261, 264, 309, 567
Fsp4HI GCNGC 4 cut(s) 261, 264, 309, 567
FspBI CTAG 4 cut(s) 20, 56, 65, 380
GluI GCNGC 4 cut(s) 261, 264, 309, 567
Hin1II CATG 4 cut(s) 37, 404, 458, 553
HinfI GANTC 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 398
Hpy188I TCNGA 3 cut(s) 51, 392, 561
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 301, 498
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 2 cut(s) 196, 394
HpyCH4V TGCA 6 cut(s) 84, 158, 221, 266, 302, 328
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 257, 308, 469, 493
HpyF3I CTNAG 4 cut(s) 468, 492, 516, 570
HpySE526I ACGT 2 cut(s) 196, 394
Hsp92II CATG 4 cut(s) 37, 404, 458, 553
Kzo9I GATC 1 cut(s) 268
LguI GCTCTTC 2 cut(s) 75, 453
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 7 cut(s) 20, 102, 113, 146, 189, 288, 352
Lsp1109I GCAGC 3 cut(s) 250, 295, 553
LweI GCATC 2 cut(s) 208, 431
MaeI CTAG 4 cut(s) 20, 56, 65, 380
MaeII ACGT 2 cut(s) 196, 394
MaeIII GTNAC 1 cut(s) 186
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 8 cut(s) 62, 254, 263, 371, 418, 437, 470, 518
MflI RGATCY 1 cut(s) 268
MluCI AATT 3 cut(s) 131, 140, 386
MnlI CCTC 5 cut(s) 50, 335, 502, 507, 518
MseI TTAA 4 cut(s) 105, 123, 477, 501
MspA1I CMGCKG 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 568
MwoI GCNNNNNNNGC 5 cut(s) 52, 257, 308, 469, 493
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 268
NlaIII CATG 4 cut(s) 37, 404, 458, 553
NlaIV GGNNCC 1 cut(s) 61
NspI RCATGY 1 cut(s) 553
NspV TTCGAA 1 cut(s) 73
PagI TCATGA 1 cut(s) 454
PciI ACATGT 1 cut(s) 549
PciSI GCTCTTC 2 cut(s) 75, 453
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 4 cut(s) 262, 265, 310, 568
PscI ACATGT 1 cut(s) 549
PshAI GACNNNNGTC 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 268
SapI GCTCTTC 2 cut(s) 75, 453
SaqAI TTAA 4 cut(s) 105, 123, 477, 501
SatI GCNGC 4 cut(s) 261, 264, 309, 567
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 37
SfaNI GCATC 2 cut(s) 208, 431
SfcI CTRYAG 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 73
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 131, 140, 386
SsiI CCGC 3 cut(s) 44, 261, 383
SspMI CTAG 4 cut(s) 20, 56, 65, 380
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 2 cut(s) 199, 397
TaqI TCGA 2 cut(s) 73, 423
TasI AATT 3 cut(s) 131, 140, 386
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 4 cut(s) 105, 123, 477, 501
Tru9I TTAA 4 cut(s) 105, 123, 477, 501
TseI GCWGC 3 cut(s) 263, 308, 566
TspDTI ATGAA 7 cut(s) 133, 336, 443, 446, 471, 495, 519
TspGWI ACGGA 1 cut(s) 125
Vha464I CTTAAG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 37
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 2 cut(s) 131, 386
XceI RCATGY 1 cut(s) 553
XspI CTAG 4 cut(s) 20, 56, 65, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.