RchiOBHm_Chr5g0032231

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015835
Physical Location & Seq
Forward (+)
25911709 .. 25914181
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31142

Sequence Viewer

Length: 507 bp
ATGCTTCCATTGATGAAACTCGGAACTCTGGCCATCAGAACAATTTCAAAGCCCATTGCTGCTCGCCTCAAAACACATGCTGCCGTGCACCCCAGGTTTCGTGCCGCCATCATCTGGATGGCCCAGTATCGTTGGGCAACACAATTGCAAAGACGTGTGCAATATGGACGTGCAATAAATGTTGCGATCCGCCCTCTCGATGAAGCAAAAGCTATTGCAGCTGCTACAGATTTTCTCGGAGAACTTGTCATCTTCACTGTTGCAGGACTTGCTATTGTGTATGAGGTGAATCGGAGCTACAAATCAGAGGCTAAGAAGGAGGCACAACGCAAGAAAGAATTAGAGGCACTGAAGCTGAAGGACAGAGATTTAGAAAAAGAAGTGGAATCTCTAAGGCTCAAGCTGCAAGAAATGGAGAAACAATTACAAAGAAGAAGCAGCTGGCTGGATTACTTGAGGCTATCATTACTATTCCGACAAGCTGCTGAACAACAAAAGACAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

168

Amino Acids

19.42

Weight (kDa)

10.24

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 5 - 123 8e-36 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 114
AciI CCGC 2 cut(s) 105, 190
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 2 cut(s) 371, 377
AfiI CCNNNNNNNGG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 1 cut(s) 48
AjiI CACGTC 2 cut(s) 155, 170
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 7 cut(s) 212, 221, 297, 355, 403, 441, 482
AluI AGCT 7 cut(s) 212, 221, 297, 355, 403, 441, 482
Alw21I GWGCWC 1 cut(s) 90
Alw44I GTGCAC 1 cut(s) 86
AlwI GGATC 1 cut(s) 181
AoxI GGCC 2 cut(s) 30, 120
ApaLI GTGCAC 1 cut(s) 86
ApeKI GCWGC 7 cut(s) 59, 80, 218, 221, 403, 438, 482
Asp700I GAANNNNTTC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 90
BalI TGGCCA 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 7 cut(s) 46, 67, 208, 230, 390, 450, 469
BccI CCATC 3 cut(s) 41, 112, 116
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 8 cut(s) 60, 81, 105, 219, 222, 404, 439, 483
BlsI GCNGC 8 cut(s) 61, 82, 106, 220, 223, 405, 440, 484
Bme1390I CCNGG 1 cut(s) 94
BmgBI CACGTC 2 cut(s) 155, 170
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 118
BpuEI CTTGAG 2 cut(s) 383, 475
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 7 cut(s) 46, 67, 208, 230, 390, 450, 469
BshFI GGCC 2 cut(s) 32, 122
BsiHKAI GWGCWC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 2 cut(s) 32, 122
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 2 cut(s) 105, 190
BspANI GGCC 2 cut(s) 32, 122
BspPI GGATC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 64, 443
BstDEI CTNAG 2 cut(s) 312, 392
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 218, 269, 403
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 7 cut(s) 46, 67, 208, 230, 390, 450, 469
BsuRI GGCC 2 cut(s) 32, 122
BtrI CACGTC 2 cut(s) 155, 170
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 255, 347
Cac8I GCNNGC 2 cut(s) 64, 443
Cfr13I GGNCC 1 cut(s) 121
CviAII CATG 1 cut(s) 77
DdeI CTNAG 2 cut(s) 312, 392
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 30
EciI GGCGGA 1 cut(s) 179
Eco57I CTGAAG 2 cut(s) 371, 377
EcoRII CCWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 80
FaiI YATR 4 cut(s) 78, 165, 282, 505
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 8 cut(s) 60, 81, 105, 219, 222, 404, 439, 483
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 8 cut(s) 60, 81, 105, 219, 222, 404, 439, 483
GluI GCNGC 8 cut(s) 60, 81, 105, 219, 222, 404, 439, 483
HaeIII GGCC 2 cut(s) 32, 122
Hin1II CATG 1 cut(s) 80
HinfI GANTC 2 cut(s) 289, 386
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 6 cut(s) 23, 38, 239, 294, 307, 476
Hpy188III TCNNGA 2 cut(s) 115, 197
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 310, 352
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 2 cut(s) 154, 169
HpyCH4V TGCA 7 cut(s) 88, 148, 160, 173, 218, 263, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 269, 403
HpyF3I CTNAG 2 cut(s) 312, 392
HpySE526I ACGT 2 cut(s) 154, 169
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 8 cut(s) 14, 79, 100, 106, 137, 249, 427, 431
Lsp1109I GCAGC 7 cut(s) 46, 67, 208, 230, 390, 450, 469
MaeII ACGT 2 cut(s) 154, 169
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 2 cut(s) 244, 444
MfeI CAATTG 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 4 cut(s) 42, 143, 338, 422
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 7 cut(s) 77, 204, 277, 301, 313, 337, 450
Mox20I TGGCCA 1 cut(s) 32
MroXI GAANNNNTTC 1 cut(s) 43
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 221, 441
MspR9I CCNGG 1 cut(s) 94
MunI CAATTG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 3 cut(s) 218, 269, 403
NdeII GATC 1 cut(s) 186
NlaIII CATG 1 cut(s) 80
NspI RCATGY 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 289, 386
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 8 cut(s) 61, 82, 106, 220, 223, 405, 440, 484
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 221, 441
RseI CAYNNNNRTG 1 cut(s) 116
SatI GCNGC 8 cut(s) 60, 81, 105, 219, 222, 404, 439, 483
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 398, 454
SmoI CTYRAG 2 cut(s) 398, 454
Sse9I AATT 4 cut(s) 42, 143, 338, 422
SsiI CCGC 2 cut(s) 105, 190
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 2 cut(s) 157, 172
TaqI TCGA 1 cut(s) 198
TasI AATT 4 cut(s) 42, 143, 338, 422
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 289, 386
TscAI CASTG 2 cut(s) 262, 354
TseI GCWGC 7 cut(s) 59, 80, 218, 221, 403, 438, 482
TspDTI ATGAA 2 cut(s) 29, 216
TspRI CASTG 2 cut(s) 262, 354
Van91I CCANNNNNTGG 1 cut(s) 114
VneI GTGCAC 1 cut(s) 86
XceI RCATGY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.