FvH4_3g19140

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015835
Physical Location & Seq
Forward (+)
12335116 .. 12337317
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19140.t1

Sequence Viewer

Length: 645 bp
ATGCCCTTGTTCCTTGCGAAATTTCTTGCTAGCTCTGCAGCTGCTGCTCGAAGCTCTTTTCTTCGGAAAACGAGGCAGTACGGAACATCAACATCATCATCTTCTTCGGGTCACTATCAAAGCACCACCATAATGCTTCCACTGATGAAACTCGGAACTCTGGCCATCAGAACCATTTCAAAGCCCATTGCTGCTCGCCTCAAAACTCATGCCTCCGTGCACCCCAGGTTTCGTGCCGCCATCATCTGGATGGCCCAGACAAAGTATCGCTGGGCGACACAGTTGCAAAGACGTGTGCATGGACGTGCAGTAAATGTAGCGATCCGCCCTCTCGATGAAACAAAAGCTATTGCAGCTGCTACCGATTTTCTTGGAGAACTTGTCATCTTCACCGTTGCAGGACTCGGTATAATGTATGAGGTGAATAGGACCTACAAGTCAGAGGCTAAGAAGGAGGCAAAACGCAAGGAAGAATTAGAGGCACTGAAGCTGAAGGACGAGAATTTACAAAAAGAAGTGGAATCTCTAAGGCTCAAGCTGCTAGAGATGGAGAAACAATTACAAAGAAGAAGCAGCTGGCTGGACTACTTGAGGCTATCAACTCTGTTCCGACAAGCAGCTGCTGAACAACAAAAGACAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

215

Amino Acids

24.26

Weight (kDa)

10.43

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 49 - 169 6.6e-38 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 246
AciI CCGC 2 cut(s) 237, 325
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 2 cut(s) 20, 502
AcuI CTGAAG 2 cut(s) 506, 512
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 1 cut(s) 180
AjiI CACGTC 2 cut(s) 293, 305
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 9 cut(s) 33, 41, 54, 347, 356, 490, 538, 576, 620
AluI AGCT 9 cut(s) 33, 41, 54, 347, 356, 490, 538, 576, 620
Alw21I GWGCWC 1 cut(s) 222
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 2 cut(s) 44, 623
AoxI GGCC 2 cut(s) 162, 252
ApaLI GTGCAC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 20, 502
Asp700I GAANNNNTTC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 253, 429
AsuHPI GGTGA 2 cut(s) 382, 433
AsuNHI GCTAGC 1 cut(s) 29
AvaII GGWCC 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 222
BccI CCATC 4 cut(s) 173, 244, 248, 541
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 226
BfaI CTAG 2 cut(s) 30, 542
BfmI CTRYAG 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 429
BmgBI CACGTC 2 cut(s) 293, 305
BmgT120I GGNCC 2 cut(s) 253, 429
BmrFI CCNGG 1 cut(s) 226
BmtI GCTAGC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 518, 610
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 222
BseYI CCCAGC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 2 cut(s) 164, 254
BsiHKAI GWGCWC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 246
BsnI GGCC 2 cut(s) 164, 254
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 2 cut(s) 237, 325
BspANI GGCC 2 cut(s) 164, 254
BspMAI CTGCAG 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 282, 394
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 31, 196, 578
BstDEI CTNAG 2 cut(s) 447, 527
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 1 cut(s) 324
BstMBI GATC 1 cut(s) 321
BstMWI GCNNNNNNNGC 4 cut(s) 35, 44, 353, 538
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 222
BsuRI GGCC 2 cut(s) 164, 254
BtrI CACGTC 2 cut(s) 293, 305
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 140, 482
Cac8I GCNNGC 3 cut(s) 31, 196, 578
CaiI CAGNNNCTG 2 cut(s) 44, 623
Cfr13I GGNCC 2 cut(s) 253, 429
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 209, 299
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 447, 527
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
DrdI GACNNNNNNGTC 1 cut(s) 436
DseDI GACNNNNNNGTC 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 162
EciI GGCGGA 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 429
Eco57I CTGAAG 2 cut(s) 506, 512
EcoO109I RGGNCCY 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 212, 302
FaiI YATR 5 cut(s) 131, 210, 300, 410, 417
FatI CATG 2 cut(s) 208, 298
FokI GGATG 1 cut(s) 262
FspBI CTAG 2 cut(s) 30, 542
GsaI CCCAGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 164, 254
Hin1II CATG 2 cut(s) 212, 302
HinfI GANTC 2 cut(s) 402, 521
HphI GGTGA 2 cut(s) 382, 433
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 5 cut(s) 66, 155, 170, 442, 611
Hpy188III TCNNGA 2 cut(s) 247, 332
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 445, 487
HpyCH4III ACNGT 2 cut(s) 282, 394
HpyCH4IV ACGT 2 cut(s) 292, 304
HpyCH4V TGCA 7 cut(s) 38, 220, 286, 298, 308, 353, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 44, 353, 538
HpyF3I CTNAG 2 cut(s) 447, 527
HpySE526I ACGT 2 cut(s) 292, 304
Hsp92II CATG 2 cut(s) 212, 302
Kzo9I GATC 1 cut(s) 321
LpnPI CCDG 9 cut(s) 146, 211, 232, 238, 256, 269, 384, 562, 566
MaeI CTAG 2 cut(s) 30, 542
MaeII ACGT 2 cut(s) 292, 304
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 6 cut(s) 53, 93, 96, 379, 482, 579
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 4 cut(s) 20, 473, 502, 557
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 9 cut(s) 66, 209, 223, 339, 412, 436, 448, 472, 585
Mox20I TGGCCA 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 164
MslI CAYNNNNRTG 3 cut(s) 131, 248, 303
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 4 cut(s) 41, 356, 576, 620
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 35, 44, 353, 538
NdeII GATC 1 cut(s) 321
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 2 cut(s) 212, 302
NmuCI GTSAC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 246
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PpuMI RGGWCCY 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 2 cut(s) 253, 429
PspPPI RGGWCCY 1 cut(s) 429
PstI CTGCAG 1 cut(s) 40
PstNI CAGNNNCTG 2 cut(s) 44, 623
PvuII CAGCTG 4 cut(s) 41, 356, 576, 620
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 3 cut(s) 131, 248, 303
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 2 cut(s) 253, 429
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 429
SmiMI CAYNNNNRTG 3 cut(s) 131, 248, 303
SmlI CTYRAG 2 cut(s) 533, 589
SmoI CTYRAG 2 cut(s) 533, 589
Sse9I AATT 4 cut(s) 20, 473, 502, 557
SsiI CCGC 2 cut(s) 237, 325
SspMI CTAG 2 cut(s) 30, 542
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 282, 394
TaiI ACGT 2 cut(s) 295, 307
TaqI TCGA 2 cut(s) 49, 333
TasI AATT 4 cut(s) 20, 473, 502, 557
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 521
TscAI CASTG 2 cut(s) 147, 489
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 161, 351
TspGWI ACGGA 2 cut(s) 96, 205
TspRI CASTG 2 cut(s) 147, 489
Van91I CCANNNNNTGG 1 cut(s) 246
VneI GTGCAC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 429
XapI RAATTY 2 cut(s) 20, 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 2 cut(s) 30, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.