Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005375.1

Orthogroup ID

OG0015835

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1643

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005375.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 227 bp

atgcccctgtcccttgcaaaatttcttgctggtcaagctgcagctgctgctaggagctcttttcttcgacaaacgaggcggtacggatcatcaacatcctcatcatcgagtcactatcagagcaccaccataatgcttccattgatgaaactcggaactctggccatcagaacaatttcaaagcccattgctgctcgcctcaaaacacatgctgccgtgcaccccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPA3

Protein Analysis

75

Amino Acids

8.01

Weight (kDa)

12.0

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58150
fragaria_vesca	FvH4_3g19140
malus_domestica	MD11G1257000.v1.1
prunus_persica	Prupe.4G173100_v2.0.a1
pyrus_communis	pycom11g22710
rosa_chinensis	RchiOBHm_Chr5g0032231
rosa_laevigata	RLG00000033369
rosa_multiflora	Rmu_sc0005375.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048230
rosa_rugosa	Rorug05G0129800
rosa_samantha	Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana	Rw5G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	180
AluBI	AGCT	3 cut(s)	38, 44, 57
AluI	AGCT	3 cut(s)	38, 44, 57
Alw21I	GWGCWC	3 cut(s)	59, 125, 222
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	162
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	6 cut(s)	38, 41, 44, 47, 191, 212
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	3 cut(s)	59, 125, 222
BbvI	GCAGC	6 cut(s)	25, 31, 34, 53, 178, 199
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	6 cut(s)	39, 42, 45, 48, 192, 213
BlsI	GCNGC	6 cut(s)	40, 43, 46, 49, 193, 214
Bse3DI	GCAATG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	6 cut(s)	25, 31, 34, 53, 178, 199
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	3 cut(s)	59, 125, 222
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	59, 125, 222
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	186
BssMI	GATC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 47
BstNSI	RCATGY	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	6 cut(s)	25, 31, 34, 53, 178, 199
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	5 cut(s)	38, 44, 57, 164, 184
CviKI_1	RGCY	5 cut(s)	38, 44, 57, 164, 184
CviQI	GTAC	1 cut(s)	82
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	1 cut(s)	212
FaiI	YATR	2 cut(s)	131, 210
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	6 cut(s)	39, 42, 45, 48, 192, 213
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	6 cut(s)	39, 42, 45, 48, 192, 213
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	6 cut(s)	39, 42, 45, 48, 192, 213
HaeIII	GGCC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	120, 155, 170
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	17, 41, 220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 47
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	3 cut(s)	15, 20, 146
Lsp1109I	GCAGC	6 cut(s)	25, 31, 34, 53, 178, 199
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	3 cut(s)	59, 125, 222
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	2 cut(s)	20, 174
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	69, 109, 209
Mox20I	TGGCCA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 47
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	175
PkrI	GCNGC	6 cut(s)	40, 43, 46, 49, 193, 214
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	59
SatI	GCNGC	6 cut(s)	39, 42, 45, 48, 192, 213
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	3 cut(s)	59, 125, 222
SetI	ASST	3 cut(s)	40, 46, 59
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	20, 174
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	59
TaqI	TCGA	2 cut(s)	67, 107
TasI	AATT	2 cut(s)	20, 174
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	6 cut(s)	38, 41, 44, 47, 191, 212
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	99
VneI	GTGCAC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	175
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.