Rh5BG224400

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015835
Physical Location & Seq
Forward (+)
26125077 .. 26128115
3039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG224400.1

Sequence Viewer

Length: 645 bp
ATGCCCCTGTCCCTTGCAAAATTTCTTGCTGGTCAAGCTGCAGCTGCTGCTAGGAGCTCTTTTCTTCGACAAACGAGGCGGTACGGATCATCAACATCCTCATCATCGAGTCACTATCAGAGCACCACCATAATGCTTCCATTGATGAAACTCGGAACTCTGGCCATCAGAACAATTTCAAAGCCCATTGCTGCTCGCCTCAAAACACATGCTGCCGTGCACCCCAGGTTTCGTGCCGCCATCATCTGGATGGCCCAGACAAAGTATCGTTGGGCGACACAATTGCAAAGACGTGTGCAATATGGACGTGCAATAAATGTTGCGATCCGCCCTCTCGATGAAGCAAAAGCTATTGCAGCTGCTACGGATTTTCTCGGAGAACTTGTCATCTTCACTGTTGCAGGACTTGCTATTGTGTATGAGGTGAATCGGAGCTACAAATCAGAGGCTAAGAAGGAGGCACAACGCAAGCAAGAATTAGAGGCACTGAAGCTGAAGGACAGAGATTTAGAAAAAGAAGTTGAATCTCTAAGGCTCAAGCTGCAAGAAATGGAGAAACAATTACAAAGAAGAAGCAGCTGGCTGGATTACTTGAGGCTATCAGTACTATTCCGACAAGCTGCTGAACAACAAAAGACAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

214

Amino Acids

24.29

Weight (kDa)

10.49

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 49 - 169 1.4e-37 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 246
AciI CCGC 3 cut(s) 79, 237, 328
AclWI GGATC 2 cut(s) 94, 319
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 2 cut(s) 509, 515
AfaI GTAC 2 cut(s) 83, 606
AfiI CCNNNNNNNGG 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 2 cut(s) 180, 524
AjiI CACGTC 2 cut(s) 293, 308
AjnI CCWGG 1 cut(s) 224
Alw21I GWGCWC 3 cut(s) 59, 125, 222
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 2 cut(s) 94, 319
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 2 cut(s) 162, 252
ApaLI GTGCAC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 164
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 3 cut(s) 59, 125, 222
BccI CCATC 3 cut(s) 173, 244, 248
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 226
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 39
BmcAI AGTACT 1 cut(s) 606
Bme1390I CCNGG 1 cut(s) 226
BmgBI CACGTC 2 cut(s) 293, 308
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 226
BpuEI CTTGAG 2 cut(s) 521, 613
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 95, 255
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 222
BshFI GGCC 2 cut(s) 164, 254
BsiHKAI GWGCWC 3 cut(s) 59, 125, 222
BslI CCNNNNNNNGG 1 cut(s) 246
BsnI GGCC 2 cut(s) 164, 254
Bsp1286I GDGCHC 3 cut(s) 59, 125, 222
Bsp143I GATC 2 cut(s) 86, 324
BspACI CCGC 3 cut(s) 79, 237, 328
BspANI GGCC 2 cut(s) 164, 254
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 2 cut(s) 94, 319
BsrDI GCAATG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 86, 324
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 397
BstAPI GCANNNNNTGC 2 cut(s) 47, 407
BstC8I GCNNGC 3 cut(s) 196, 470, 581
BstDEI CTNAG 2 cut(s) 450, 530
BstF5I GGATG 2 cut(s) 95, 255
BstKTI GATC 2 cut(s) 89, 327
BstMBI GATC 2 cut(s) 86, 324
BstMWI GCNNNNNNNGC 6 cut(s) 35, 44, 47, 356, 407, 541
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 222
BsuRI GGCC 2 cut(s) 164, 254
BtrI CACGTC 2 cut(s) 293, 308
BtsCI GGATG 2 cut(s) 95, 255
BtsIMutI CAGTG 2 cut(s) 393, 485
Cac8I GCNNGC 3 cut(s) 196, 470, 581
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 82, 605
CviAII CATG 1 cut(s) 209
CviQI GTAC 2 cut(s) 82, 605
DdeI CTNAG 2 cut(s) 450, 530
DpnI GATC 2 cut(s) 88, 326
DpnII GATC 2 cut(s) 86, 324
EaeI YGGCCR 1 cut(s) 162
EciI GGCGGA 1 cut(s) 317
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 509, 515
EcoICRI GAGCTC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 212
FaiI YATR 5 cut(s) 131, 210, 303, 420, 643
FatI CATG 1 cut(s) 208
FokI GGATG 2 cut(s) 82, 262
FriOI GRGCYC 1 cut(s) 59
FspBI CTAG 1 cut(s) 51
HaeIII GGCC 2 cut(s) 164, 254
Hin1II CATG 1 cut(s) 212
HinfI GANTC 3 cut(s) 109, 427, 524
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 7 cut(s) 120, 155, 170, 377, 432, 445, 614
Hpy188III TCNNGA 2 cut(s) 247, 335
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 448, 490
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 2 cut(s) 292, 307
HpyCH4V TGCA 9 cut(s) 17, 41, 220, 286, 298, 311, 356, 401, 544
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 44, 47, 356, 407, 541
HpyF3I CTNAG 2 cut(s) 450, 530
HpySE526I ACGT 2 cut(s) 292, 307
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 2 cut(s) 86, 324
LmnI GCTCC 2 cut(s) 54, 432
MaeI CTAG 1 cut(s) 51
MaeII ACGT 2 cut(s) 292, 307
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 88, 326
MboI GATC 2 cut(s) 86, 324
MboII GAAGA 3 cut(s) 56, 382, 582
MfeI CAATTG 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 59, 125, 222
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 5 cut(s) 20, 174, 281, 476, 560
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 9 cut(s) 69, 109, 209, 342, 415, 439, 451, 475, 588
Mox20I TGGCCA 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 164
MslI CAYNNNNRTG 2 cut(s) 131, 248
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 3 cut(s) 44, 359, 579
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 6 cut(s) 35, 44, 47, 356, 407, 541
NdeII GATC 2 cut(s) 86, 324
NlaIII CATG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 427, 524
PflMI CCANNNNNTGG 1 cut(s) 246
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 1 cut(s) 253
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 47
PvuII CAGCTG 3 cut(s) 44, 359, 579
RsaI GTAC 2 cut(s) 83, 606
RsaNI GTAC 2 cut(s) 82, 605
RseI CAYNNNNRTG 2 cut(s) 131, 248
SacI GAGCTC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 86, 324
Sau96I GGNCC 1 cut(s) 253
ScaI AGTACT 1 cut(s) 606
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 3 cut(s) 59, 125, 222
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 131, 248
SmlI CTYRAG 2 cut(s) 536, 592
SmoI CTYRAG 2 cut(s) 536, 592
Sse9I AATT 5 cut(s) 20, 174, 281, 476, 560
SsiI CCGC 3 cut(s) 79, 237, 328
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 2 cut(s) 295, 310
TaqI TCGA 3 cut(s) 67, 107, 336
TasI AATT 5 cut(s) 20, 174, 281, 476, 560
TatI WGTACW 1 cut(s) 604
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 2 cut(s) 427, 524
TscAI CASTG 2 cut(s) 400, 492
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 161, 354
TspGWI ACGGA 2 cut(s) 99, 380
TspRI CASTG 2 cut(s) 400, 492
Van91I CCANNNNNTGG 1 cut(s) 246
VneI GTGCAC 1 cut(s) 218
XapI RAATTY 1 cut(s) 20
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 1 cut(s) 51
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.