Rorug05G0129800

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015835
Physical Location & Seq
Reverse (-)
11537505 .. 11538368
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0129800.1

Sequence Viewer

Length: 864 bp
ATGTCGTCTCAGTTCTCCCTGGCCAAGCTCCTTTGCCCCATCTCCTATACCATGTCGTCTCAGTTCTCCCTAGCCACGCTCCGCGCGGCCACCAACAACTTCTCTACGGATAATGTCGTTGGATATGGGAGGAGTGGGTTGATCTACAAGGCCAATCTCTCCAACGGACTCACCGTCGCCATCAAGAACTACGACCCTGATCGATTCCAAGGCTTTCGGGAATTTCGGGCCGAAGCCGAAGTTCTAGGCAAGCTTCGACACCCAAATATCGTTAAGCTTTTGAGTTATCAGGCGTCCGGCTCAGTTATGCTTCTTGTTTATGAGTACGTAGAGAGAGGTACCCTTTACACACATCTTCGTGATTCACCCTCTTTTTCATGGCTAGACAAGTTAAAGATTATTAGGGGTGTAGCTGACGGTCTCGCTTATTTGCATGGGTTGAAAAAGCCTGTCATTCATAGAGACATTTCAACTAGAAATGTGCTACTGGACTCGGACTATGAGCCGCGTATTATTAATTTTGGGGTTTCTAGGACTATTGACAAGTATCATTCGCTTTCGCACGTGTCATCTGGACCGGCTGGGTCTATACCGTACATGGCGCCAGAGTACATGAGTGGGAGCACTAAAGACAAGGTGAAAGGCGACGTGTATAGCTTTGGCATTTTAATGCTGGAGACCATGAAATCTGGAAATTGTAGTAAATACGAGGTCGATGCGCAGTGGCCCGAGTATATTCGGATCGCCTCATGTTGTGCCTCATATCGTCCAGAAGACAGGCCTCAGATGAACGAGGTTGCTCAAATGCTAAATCAAATTCCTGTACAGAGAGCTCCTCCAGCTTCCTCCAGCAGCACTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

287

Amino Acids

31.97

Weight (kDa)

9.01

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 35 - 232 1.3e-35 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 237 1.1e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 720
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 338, 601
AccII CGCG 3 cut(s) 84, 86, 508
AciI CCGC 3 cut(s) 82, 86, 506
AclWI GGATC 1 cut(s) 749
AcoI YGGCCR 2 cut(s) 21, 87
AcsI RAATTY 2 cut(s) 221, 816
AcvI CACGTG 1 cut(s) 565
AcyI GRCGYC 2 cut(s) 293, 602
AfaI GTAC 5 cut(s) 326, 340, 596, 611, 825
AflIII ACRYGT 2 cut(s) 564, 648
AgsI TTSAA 2 cut(s) 442, 471
AhdI GACNNNNNGTC 1 cut(s) 173
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 7 cut(s) 28, 253, 277, 413, 657, 833, 842
AluI AGCT 7 cut(s) 28, 253, 277, 413, 657, 833, 842
Alw21I GWGCWC 2 cut(s) 626, 835
Alw26I GTCTC 5 cut(s) 12, 63, 425, 456, 671
AlwI GGATC 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 6 cut(s) 21, 87, 150, 228, 725, 779
ApeKI GCWGC 1 cut(s) 852
ApoI RAATTY 2 cut(s) 221, 816
AseI ATTAAT 1 cut(s) 516
Asp718I GGTACC 1 cut(s) 338
AspLEI GCGC 3 cut(s) 86, 604, 721
AspS9I GGNCC 3 cut(s) 228, 575, 726
AsuHPI GGTGA 3 cut(s) 163, 357, 649
AvaI CYCGRG 1 cut(s) 728
AvaII GGWCC 1 cut(s) 575
BalI TGGCCA 1 cut(s) 23
BanI GGYRCC 2 cut(s) 338, 601
BanII GRGCYC 1 cut(s) 835
BbrPI CACGTG 1 cut(s) 565
BbsI GAAGAC 1 cut(s) 780
Bbv12I GWGCWC 2 cut(s) 626, 835
BccI CCATC 2 cut(s) 47, 188
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 5 cut(s) 12, 63, 425, 456, 671
BfaI CTAG 5 cut(s) 71, 245, 383, 474, 531
BfoI RGCGCY 1 cut(s) 605
BisI GCNGC 3 cut(s) 87, 506, 853
BlsI GCNGC 3 cut(s) 88, 507, 854
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 575
BmeRI GACNNNNNGTC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 728
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 3 cut(s) 228, 575, 726
BmiI GGNNCC 2 cut(s) 340, 603
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 706
BpiI GAAGAC 1 cut(s) 780
BplI GAGNNNNNCTC 2 cut(s) 820, 852
BpmI CTGGAG 3 cut(s) 695, 822, 832
Bsa29I ATCGAT 1 cut(s) 202
BsaAI YACGTR 2 cut(s) 328, 565
BsaHI GRCGYC 2 cut(s) 293, 602
BsaI GGTCTC 2 cut(s) 425, 671
BsaJI CCNNGG 2 cut(s) 18, 208
Bse118I RCCGGY 1 cut(s) 577
Bse1I ACTGG 2 cut(s) 492, 862
BseBI CCWGG 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 18, 208
BseMII CTCAG 4 cut(s) 23, 74, 315, 797
BseNI ACTGG 2 cut(s) 492, 862
BseRI GAGGAG 2 cut(s) 145, 825
BseYI CCCAGC 1 cut(s) 581
Bsh1236I CGCG 3 cut(s) 84, 86, 508
BshFI GGCC 6 cut(s) 23, 89, 152, 230, 727, 781
BshNI GGYRCC 2 cut(s) 338, 601
BshVI ATCGAT 1 cut(s) 202
BsiHKAI GWGCWC 2 cut(s) 626, 835
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 2 cut(s) 297, 578
BsmAI GTCTC 5 cut(s) 12, 63, 425, 456, 671
BsmBI CGTCTC 2 cut(s) 12, 63
BsnI GGCC 6 cut(s) 23, 89, 152, 230, 727, 781
Bso31I GGTCTC 2 cut(s) 425, 671
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 2 cut(s) 626, 835
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 3 cut(s) 141, 199, 741
BspACI CCGC 3 cut(s) 82, 86, 506
BspANI GGCC 6 cut(s) 23, 89, 152, 230, 727, 781
BspCNI CTCAG 4 cut(s) 22, 73, 314, 796
BspDI ATCGAT 1 cut(s) 202
BspFNI CGCG 3 cut(s) 84, 86, 508
BspLI GGNNCC 2 cut(s) 340, 603
BspPI GGATC 1 cut(s) 749
BspT107I GGYRCC 2 cut(s) 338, 601
BspTNI GGTCTC 2 cut(s) 425, 671
BsrFI RCCGGY 1 cut(s) 577
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 2 cut(s) 492, 862
BssAI RCCGGY 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 18, 208
BssMI GATC 3 cut(s) 141, 199, 741
BssNI GRCGYC 2 cut(s) 293, 602
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 175, 419, 594
BstACI GRCGYC 2 cut(s) 293, 602
BstAUI TGTACA 1 cut(s) 823
BstBAI YACGTR 2 cut(s) 328, 565
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 4 cut(s) 9, 60, 301, 783
BstFNI CGCG 3 cut(s) 84, 86, 508
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 3 cut(s) 86, 604, 721
BstKTI GATC 3 cut(s) 144, 202, 744
BstMAI GTCTC 5 cut(s) 12, 63, 425, 456, 671
BstMBI GATC 3 cut(s) 141, 199, 741
BstMWI GCNNNNNNNGC 1 cut(s) 839
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSNI TACGTA 1 cut(s) 328
BstUI CGCG 3 cut(s) 84, 86, 508
BstV2I GAAGAC 1 cut(s) 780
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 6 cut(s) 23, 89, 152, 230, 727, 781
BsuTUI ATCGAT 1 cut(s) 202
BtrI CACGTC 1 cut(s) 649
BtsI GCAGTG 1 cut(s) 728
BtsIMutI CAGTG 2 cut(s) 728, 855
Cac8I GCNNGC 1 cut(s) 251
CfoI GCGC 3 cut(s) 86, 604, 721
Cfr10I RCCGGY 1 cut(s) 577
Cfr13I GGNCC 3 cut(s) 228, 575, 726
ClaI ATCGAT 1 cut(s) 202
CseI GACGC 1 cut(s) 282
Csp6I GTAC 5 cut(s) 325, 339, 595, 610, 824
CviAII CATG 7 cut(s) 52, 378, 434, 598, 613, 682, 750
CviQI GTAC 5 cut(s) 325, 339, 595, 610, 824
DdeI CTNAG 4 cut(s) 9, 60, 301, 783
DinI GGCGCC 1 cut(s) 603
DpnI GATC 3 cut(s) 143, 201, 743
DpnII GATC 3 cut(s) 141, 199, 741
DriI GACNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 2 cut(s) 21, 87
Eam1105I GACNNNNNGTC 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 833
Eco105I TACGTA 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 781
Eco24I GRGCYC 1 cut(s) 835
Eco31I GGTCTC 2 cut(s) 425, 671
Eco47I GGWCC 1 cut(s) 575
Eco53kI GAGCTC 1 cut(s) 833
Eco72I CACGTG 1 cut(s) 565
Eco88I CYCGRG 1 cut(s) 728
EcoICRI GAGCTC 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 835
EgeI GGCGCC 1 cut(s) 603
EheI GGCGCC 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 208
Esp3I CGTCTC 2 cut(s) 12, 63
FaeI CATG 7 cut(s) 55, 381, 437, 601, 616, 685, 753
FatI CATG 7 cut(s) 51, 377, 433, 597, 612, 681, 749
Fnu4HI GCNGC 3 cut(s) 87, 506, 853
FriOI GRGCYC 1 cut(s) 835
Fsp4HI GCNGC 3 cut(s) 87, 506, 853
FspBI CTAG 5 cut(s) 71, 245, 383, 474, 531
FspI TGCGCA 1 cut(s) 720
GlaI GCGC 3 cut(s) 85, 603, 720
GluI GCNGC 3 cut(s) 87, 506, 853
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 3 cut(s) 695, 822, 832
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 6 cut(s) 23, 89, 152, 230, 727, 781
HapII CCGG 2 cut(s) 297, 578
HgaI GACGC 1 cut(s) 282
HhaI GCGC 3 cut(s) 86, 604, 721
Hin1I GRCGYC 2 cut(s) 293, 602
Hin1II CATG 7 cut(s) 55, 381, 437, 601, 616, 685, 753
Hin6I GCGC 3 cut(s) 84, 602, 719
HinP1I GCGC 3 cut(s) 84, 602, 719
HindIII AAGCTT 2 cut(s) 251, 275
HinfI GANTC 4 cut(s) 168, 204, 362, 491
HpaII CCGG 2 cut(s) 297, 578
HphI GGTGA 3 cut(s) 163, 357, 649
Hpy188I TCNGA 3 cut(s) 496, 741, 786
Hpy188III TCNNGA 6 cut(s) 184, 218, 359, 573, 690, 770
Hpy99I CGWCG 2 cut(s) 179, 650
HpyCH4III ACNGT 3 cut(s) 175, 419, 594
HpyCH4IV ACGT 3 cut(s) 327, 564, 648
HpyCH4V TGCA 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 839
HpyF3I CTNAG 4 cut(s) 9, 60, 301, 783
HpySE526I ACGT 3 cut(s) 327, 564, 648
Hsp92I GRCGYC 2 cut(s) 293, 602
Hsp92II CATG 7 cut(s) 55, 381, 437, 601, 616, 685, 753
HspAI GCGC 3 cut(s) 84, 602, 719
KasI GGCGCC 1 cut(s) 601
KpnI GGTACC 1 cut(s) 342
Kzo9I GATC 3 cut(s) 141, 199, 741
LmnI GCTCC 4 cut(s) 33, 84, 621, 838
LweI GCATC 1 cut(s) 706
MaeI CTAG 5 cut(s) 71, 245, 383, 474, 531
MaeII ACGT 3 cut(s) 327, 564, 648
MalI GATC 3 cut(s) 143, 201, 743
MboI GATC 3 cut(s) 141, 199, 741
MboII GAAGA 2 cut(s) 347, 785
MhlI GDGCHC 2 cut(s) 626, 835
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 4 cut(s) 221, 517, 694, 816
MluNI TGGCCA 1 cut(s) 23
Mly113I GGCGCC 1 cut(s) 602
MlyI GAGTC 2 cut(s) 162, 485
MmeI TCCRAC 2 cut(s) 100, 186
Mox20I TGGCCA 1 cut(s) 23
MscI TGGCCA 1 cut(s) 23
MseI TTAA 5 cut(s) 273, 392, 516, 668, 862
MslI CAYNNNNRTG 2 cut(s) 357, 668
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 2 cut(s) 297, 578
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 3 cut(s) 84, 86, 508
MwoI GCNNNNNNNGC 1 cut(s) 839
NarI GGCGCC 1 cut(s) 602
NdeII GATC 3 cut(s) 141, 199, 741
NlaIII CATG 7 cut(s) 55, 381, 437, 601, 616, 685, 753
NlaIV GGNNCC 2 cut(s) 340, 603
NsbI TGCGCA 1 cut(s) 720
PceI AGGCCT 1 cut(s) 781
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 2 cut(s) 204, 362
PkrI GCNGC 3 cut(s) 88, 507, 854
PleI GAGTC 2 cut(s) 162, 485
PluTI GGCGCC 1 cut(s) 605
PmaCI CACGTG 1 cut(s) 565
PmlI CACGTG 1 cut(s) 565
PpsI GAGTC 2 cut(s) 162, 485
Ppu21I YACGTR 2 cut(s) 328, 565
PshBI ATTAAT 1 cut(s) 516
Psp124BI GAGCTC 1 cut(s) 835
Psp6I CCWGG 1 cut(s) 18
PspCI CACGTG 1 cut(s) 565
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 340, 603
PspPI GGNCC 3 cut(s) 228, 575, 726
RsaI GTAC 5 cut(s) 326, 340, 596, 611, 825
RsaNI GTAC 5 cut(s) 325, 339, 595, 610, 824
RseI CAYNNNNRTG 2 cut(s) 357, 668
SacI GAGCTC 1 cut(s) 835
SaqAI TTAA 5 cut(s) 273, 392, 516, 668, 862
SatI GCNGC 3 cut(s) 87, 506, 853
Sau3AI GATC 3 cut(s) 141, 199, 741
Sau96I GGNCC 3 cut(s) 228, 575, 726
SchI GAGTC 2 cut(s) 162, 485
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 2 cut(s) 626, 835
SfaNI GCATC 1 cut(s) 706
SfoI GGCGCC 1 cut(s) 603
SinI GGWCC 1 cut(s) 575
SmiMI CAYNNNNRTG 2 cut(s) 357, 668
SnaBI TACGTA 1 cut(s) 328
Sse9I AATT 4 cut(s) 221, 517, 694, 816
SseBI AGGCCT 1 cut(s) 781
SsiI CCGC 3 cut(s) 82, 86, 506
SspDI GGCGCC 1 cut(s) 601
SspMI CTAG 5 cut(s) 71, 245, 383, 474, 531
SstI GAGCTC 1 cut(s) 835
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 3 cut(s) 175, 419, 594
TaiI ACGT 3 cut(s) 330, 567, 651
TaqI TCGA 3 cut(s) 202, 256, 714
TasI AATT 4 cut(s) 221, 517, 694, 816
TatI WGTACW 2 cut(s) 609, 823
TauI GCSGC 2 cut(s) 89, 508
TfiI GAWTC 2 cut(s) 204, 362
Tru1I TTAA 5 cut(s) 273, 392, 516, 668, 862
Tru9I TTAA 5 cut(s) 273, 392, 516, 668, 862
TscAI CASTG 2 cut(s) 728, 862
TseI GCWGC 1 cut(s) 852
TspDTI ATGAA 4 cut(s) 366, 446, 698, 803
TspGWI ACGGA 2 cut(s) 122, 180
TspRI CASTG 2 cut(s) 728, 862
VpaK11BI GGWCC 1 cut(s) 575
VspI ATTAAT 1 cut(s) 516
XapI RAATTY 2 cut(s) 221, 816
XspI CTAG 5 cut(s) 71, 245, 383, 474, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.