MD11G1257000.v1.1

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015835
Physical Location & Seq
Reverse (-)
36938601 .. 36940659
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1257000.v1.1.491

Sequence Viewer

Length: 546 bp
ATGTTTCCATTGTTTAAGCTTGGAACACTAGCCGTACGAACTATTTCGAAACCCATCGCGAATAGGCTCAAAGCCGAGGCCGGTTTGCACCCGAGGTTCCGCGAGTACATCATCGGCCTCGCCCAGGCGAACTATCGTTTCACAACGAATCTCCAAAGACGTCTATATGGACGCGCAATAGATGTTGTGATCCGTCCTCTGGATGAAGCAAAAGCTGTTGGAGCTGCTGCTGAGTTTCTTGGGGAACTTGTTATCTTCTCGGTTGCAGGACTCGCTGTTATCTATGAGGTGAACAGAAGTGCTAGATCAGAAGCTAGGAAGGAGGAACAGCGCAAGCAAGAAATAGAGGGACTGAAGAAAAGGGGGACAGATATAGAAAAAGAAGTGCAATGTCTAAAGGTCAAACTGCAGGAGATGGAGCAACTGGTCCAGGGAAGAAGCTGGCTAGATTTCTTTAAGTTATGGCACGCCCAAGCAATGTTACAAGACCAAAAGCCAGCAATGTCCTGTGATTTCCTCCATACTGATGCTGCTTCCAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

182

Amino Acids

20.62

Weight (kDa)

9.51

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 5 - 121 7.6e-42 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 163
AccII CGCG 3 cut(s) 59, 102, 174
AciI CCGC 1 cut(s) 100
AclWI GGATC 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 2 cut(s) 36, 107
AfiI CCNNNNNNNGG 2 cut(s) 124, 199
AjnI CCWGG 2 cut(s) 123, 429
AluBI AGCT 6 cut(s) 19, 215, 224, 314, 441, 541
AluI AGCT 6 cut(s) 19, 215, 224, 314, 441, 541
AlwI GGATC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 2 cut(s) 78, 115
ApeKI GCWGC 3 cut(s) 224, 227, 530
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 2 cut(s) 176, 333
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 211, 214, 517
BccI CCATC 2 cut(s) 62, 409
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 2 cut(s) 125, 431
BfaI CTAG 4 cut(s) 29, 303, 315, 446
BfmI CTRYAG 1 cut(s) 407
BisI GCNGC 3 cut(s) 225, 228, 531
BlsI GCNGC 3 cut(s) 226, 229, 532
Bme1390I CCNGG 2 cut(s) 125, 431
Bme18I GGWCC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 125, 431
BmsI GCATC 1 cut(s) 517
Bpu14I TTCGAA 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 4 cut(s) 75, 92, 123, 430
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 199
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 429
Bse3DI GCAATG 3 cut(s) 395, 483, 507
BseBI CCWGG 2 cut(s) 125, 431
BseDI CCNNGG 4 cut(s) 75, 92, 123, 430
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 124, 199
BseMI GCAATG 3 cut(s) 395, 483, 507
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 429
BseXI GCAGC 3 cut(s) 211, 214, 517
Bsh1236I CGCG 3 cut(s) 59, 102, 174
BshFI GGCC 2 cut(s) 80, 117
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 81
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 363, 379
BslI CCNNNNNNNGG 2 cut(s) 124, 199
BsmFI GGGAC 2 cut(s) 363, 379
BsnI GGCC 2 cut(s) 80, 117
BsoBI CYCGRG 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 47
Bsp143I GATC 2 cut(s) 189, 305
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 1 cut(s) 100
BspANI GGCC 2 cut(s) 80, 117
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 3 cut(s) 59, 102, 174
BspLI GGNNCC 1 cut(s) 98
BspMAI CTGCAG 1 cut(s) 411
BspPI GGATC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 47
BsrDI GCAATG 3 cut(s) 395, 483, 507
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 429
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 4 cut(s) 75, 92, 123, 430
BssMI GATC 2 cut(s) 189, 305
BssNI GRCGYC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 125, 431
BstACI GRCGYC 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 4 cut(s) 335, 443, 468, 498
BstDEI CTNAG 1 cut(s) 231
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 3 cut(s) 59, 102, 174
BstHHI GCGC 2 cut(s) 176, 333
BstKTI GATC 2 cut(s) 192, 308
BstMBI GATC 2 cut(s) 189, 305
BstMWI GCNNNNNNNGC 2 cut(s) 221, 272
BstNI CCWGG 2 cut(s) 125, 431
BstSCI CCNGG 2 cut(s) 123, 429
BstSFI CTRYAG 1 cut(s) 407
BstUI CGCG 3 cut(s) 59, 102, 174
BstV1I GCAGC 3 cut(s) 211, 214, 517
BsuRI GGCC 2 cut(s) 80, 117
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 208
BtuMI TCGCGA 1 cut(s) 59
Cac8I GCNNGC 4 cut(s) 335, 443, 468, 498
CfoI GCGC 2 cut(s) 176, 333
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 427
CseI GACGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 35, 106
CviQI GTAC 2 cut(s) 35, 106
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 191, 307
DpnII GATC 2 cut(s) 189, 305
Eco47I GGWCC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 123, 429
FaiI YATR 7 cut(s) 166, 168, 285, 374, 463, 522, 544
FaqI GGGAC 2 cut(s) 363, 379
Fnu4HI GCNGC 3 cut(s) 225, 228, 531
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 225, 228, 531
FspBI CTAG 4 cut(s) 29, 303, 315, 446
GlaI GCGC 2 cut(s) 175, 332
GluI GCNGC 3 cut(s) 225, 228, 531
HaeIII GGCC 2 cut(s) 80, 117
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 180
HhaI GCGC 2 cut(s) 176, 333
Hin1I GRCGYC 1 cut(s) 160
Hin6I GCGC 2 cut(s) 174, 331
HinP1I GCGC 2 cut(s) 174, 331
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 148, 270
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 2 cut(s) 58, 200
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 88, 266, 388, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 272
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 160
HspAI GCGC 2 cut(s) 174, 331
Kzo9I GATC 2 cut(s) 189, 305
LmnI GCTCC 2 cut(s) 221, 418
Lsp1109I GCAGC 3 cut(s) 211, 214, 517
LweI GCATC 1 cut(s) 517
MaeI CTAG 4 cut(s) 29, 303, 315, 446
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 480
MalI GATC 2 cut(s) 191, 307
MboI GATC 2 cut(s) 189, 305
MboII GAAGA 3 cut(s) 247, 367, 447
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 8 cut(s) 70, 87, 128, 207, 280, 316, 340, 527
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 2 cut(s) 15, 456
MslI CAYNNNNRTG 1 cut(s) 525
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 125, 431
MvaI CCWGG 2 cut(s) 125, 431
MvnI CGCG 3 cut(s) 59, 102, 174
MwoI GCNNNNNNNGC 2 cut(s) 221, 272
NdeII GATC 2 cut(s) 189, 305
NlaIV GGNNCC 1 cut(s) 98
NmeAIII GCCGAG 1 cut(s) 100
NruI TCGCGA 1 cut(s) 59
NspV TTCGAA 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 148
Pfl23II CGTACG 1 cut(s) 34
PkrI GCNGC 3 cut(s) 226, 229, 532
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 123, 429
PspGI CCWGG 2 cut(s) 123, 429
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 427
PstI CTGCAG 1 cut(s) 411
RruI TCGCGA 1 cut(s) 59
RsaI GTAC 2 cut(s) 36, 107
RsaNI GTAC 2 cut(s) 35, 106
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 2 cut(s) 15, 456
SatI GCNGC 3 cut(s) 225, 228, 531
Sau3AI GATC 2 cut(s) 189, 305
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 2 cut(s) 125, 431
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 407
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 525
SsiI CCGC 1 cut(s) 100
SspMI CTAG 4 cut(s) 29, 303, 315, 446
StyD4I CCNGG 2 cut(s) 123, 429
TaiI ACGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 15, 456
Tru9I TTAA 2 cut(s) 15, 456
TseI GCWGC 3 cut(s) 224, 227, 530
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 427
XagI CCTNNNNNAGG 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 4 cut(s) 29, 303, 315, 446
ZraI GACGTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.