pycom11g22710

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015835
Physical Location & Seq
Reverse (-)
25681022 .. 25682989
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22710.2

Sequence Viewer

Length: 546 bp
ATGTTTCCATTGTTTAAGCTTGGAACACTAGCCGTACGAACTATTTCGAAACCCATCGCGAATAGGCTCAAAGCCGAGGCCGGCTTGCACCCGCGGTTCCGCGAGTACATCATCAGCCTCGCCCAGGCGAACTATCGTTTCACAACGAATCTCCAAAGACGTCTATATGGACGCGCAACAGATGTTGTGATCCGTCCTCTGGATGAAGCAAAAGCTGTTGGAGCTGCTGCTGAGTTTCTTGGGGAACTTGTTATTTTCTCGGTTGCAGGACTCGCTGTTATCTATGAGGTGAACAGAAGTGCTAGATCAGAAGCTAGGAAGGAGGAACAGCGCAAGCAAGAAATAGAGGGACTGAAGAAAAGGGGGACAGATTTAGAAAAACAAGTGCAATGTCTAAAGGTCAAACTGCAAGAGATGGAGCAACTTGTCCAGAGAAGAGGCTGGCTAGATTTCTTTAAGTTCTGGCACGCCCAAGCAATGTTACAAGACCAAAGTTCTGCAATGTCCTGTGATTTCCTCCATACTGATGCTGCTTCCAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

182

Amino Acids

20.69

Weight (kDa)

9.66

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 163
AccII CGCG 4 cut(s) 59, 94, 102, 174
AciI CCGC 3 cut(s) 92, 94, 100
AclWI GGATC 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 2 cut(s) 36, 107
AfiI CCNNNNNNNGG 2 cut(s) 124, 199
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 5 cut(s) 19, 215, 224, 314, 541
AluI AGCT 5 cut(s) 19, 215, 224, 314, 541
AlwI GGATC 1 cut(s) 184
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 224, 227, 530
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 2 cut(s) 176, 333
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 47
BbvI GCAGC 3 cut(s) 211, 214, 517
BccI CCATC 2 cut(s) 62, 409
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 125
BfaI CTAG 4 cut(s) 29, 303, 315, 446
BisI GCNGC 3 cut(s) 225, 228, 531
BlsI GCNGC 3 cut(s) 226, 229, 532
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 517
Bpu14I TTCGAA 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 75, 92, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 199
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 3 cut(s) 395, 483, 507
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 3 cut(s) 75, 92, 123
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 124, 199
BseMI GCAATG 3 cut(s) 395, 483, 507
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 3 cut(s) 211, 214, 517
Bsh1236I CGCG 4 cut(s) 59, 94, 102, 174
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 81
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 363, 379
BslI CCNNNNNNNGG 2 cut(s) 124, 199
BsmFI GGGAC 2 cut(s) 363, 379
BsnI GGCC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 47
Bsp143I GATC 2 cut(s) 189, 305
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 3 cut(s) 92, 94, 100
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 4 cut(s) 59, 94, 102, 174
BspLI GGNNCC 1 cut(s) 98
BspPI GGATC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 47
BsrDI GCAATG 3 cut(s) 395, 483, 507
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 75, 92, 123
BssMI GATC 2 cut(s) 189, 305
BssNI GRCGYC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 5 cut(s) 82, 86, 335, 443, 468
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 4 cut(s) 59, 94, 102, 174
BstHHI GCGC 2 cut(s) 176, 333
BstKTI GATC 2 cut(s) 192, 308
BstMBI GATC 2 cut(s) 189, 305
BstMWI GCNNNNNNNGC 2 cut(s) 221, 272
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 4 cut(s) 59, 94, 102, 174
BstV1I GCAGC 3 cut(s) 211, 214, 517
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 208
BtuMI TCGCGA 1 cut(s) 59
Cac8I GCNNGC 5 cut(s) 82, 86, 335, 443, 468
CfoI GCGC 2 cut(s) 176, 333
Cfr10I RCCGGY 1 cut(s) 80
Cfr42I CCGCGG 1 cut(s) 95
CseI GACGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 35, 106
CviQI GTAC 2 cut(s) 35, 106
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 191, 307
DpnII GATC 2 cut(s) 189, 305
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 374
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 123
FaiI YATR 5 cut(s) 166, 168, 285, 522, 544
FaqI GGGAC 2 cut(s) 363, 379
FauI CCCGC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 225, 228, 531
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 225, 228, 531
FspBI CTAG 4 cut(s) 29, 303, 315, 446
GlaI GCGC 2 cut(s) 175, 332
GluI GCNGC 3 cut(s) 225, 228, 531
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 180
HhaI GCGC 2 cut(s) 176, 333
Hin1I GRCGYC 1 cut(s) 160
Hin6I GCGC 2 cut(s) 174, 331
HinP1I GCGC 2 cut(s) 174, 331
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 148, 270
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 3 cut(s) 58, 200, 430
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 5 cut(s) 88, 266, 388, 409, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 272
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 160
HspAI GCGC 2 cut(s) 174, 331
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
KspI CCGCGG 1 cut(s) 95
Kzo9I GATC 2 cut(s) 189, 305
LmnI GCTCC 2 cut(s) 221, 418
LpnPI CCDG 9 cut(s) 94, 110, 137, 185, 252, 427, 443, 448, 520
Lsp1109I GCAGC 3 cut(s) 211, 214, 517
LweI GCATC 1 cut(s) 517
MaeI CTAG 4 cut(s) 29, 303, 315, 446
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 480
MalI GATC 2 cut(s) 191, 307
MboI GATC 2 cut(s) 189, 305
MboII GAAGA 2 cut(s) 367, 447
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 8 cut(s) 70, 128, 207, 280, 316, 340, 431, 527
MroNI GCCGGC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 2 cut(s) 15, 456
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 4 cut(s) 59, 94, 102, 174
MwoI GCNNNNNNNGC 2 cut(s) 221, 272
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 2 cut(s) 189, 305
NgoMIV GCCGGC 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 98
NmeAIII GCCGAG 1 cut(s) 100
NruI TCGCGA 1 cut(s) 59
NspV TTCGAA 1 cut(s) 47
PdiI GCCGGC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 148
Pfl23II CGTACG 1 cut(s) 34
PkrI GCNGC 3 cut(s) 226, 229, 532
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 98
RruI TCGCGA 1 cut(s) 59
RsaI GTAC 2 cut(s) 36, 107
RsaNI GTAC 2 cut(s) 35, 106
RseI CAYNNNNRTG 1 cut(s) 525
SacII CCGCGG 1 cut(s) 95
SaqAI TTAA 2 cut(s) 15, 456
SatI GCNGC 3 cut(s) 225, 228, 531
Sau3AI GATC 2 cut(s) 189, 305
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 125
SetI ASST 8 cut(s) 21, 163, 217, 226, 291, 316, 402, 543
SfaNI GCATC 1 cut(s) 517
Sfr303I CCGCGG 1 cut(s) 95
SfuI TTCGAA 1 cut(s) 47
SgrBI CCGCGG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 525
SsiI CCGC 3 cut(s) 92, 94, 100
SspMI CTAG 4 cut(s) 29, 303, 315, 446
StyD4I CCNGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 15, 456
Tru9I TTAA 2 cut(s) 15, 456
TseI GCWGC 3 cut(s) 224, 227, 530
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 4 cut(s) 29, 303, 315, 446
ZraI GACGTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.