Prupe.4G173100_v2.0.a1

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015835
Physical Location & Seq
Forward (+)
10248552 .. 10250349
1798 bp
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UTR
Exon/CDS
Intron
Prupe.4G173100.1

Sequence Viewer

Length: 516 bp
ATGCTTCCATTGTTAAAGCTTGGAACACTAGCCTTACGAACTATTTCCAGGCCAATTGCTAGAAGGCTCAAAGTAGAGGCTGGATTACACCCCAGGTTTCGGGACTACATAATCAGCTTTGCCCAGGCAAACTATCGTTTCAGAACAAATCTACAAAGACGTCTATATGGACGGGCAACAGATGTTGTGATCCGTCCTATGGATGAAGAAAAAGCTGTTGGAGCTGCTGCAGAGCTTCTTGGGGAACTTGTTATCTTCACGGTTGCAGGACTTGCTATAATCTATGAGGTGCAAAGAAGTGCTAGATCAGAAGCTAGAAAGGAGGAACAGCGCAAGCAAGAAATAGAGGCAAATTCAAGCAATGAAGCAAAAAGGCACAGATTTAGAAAAAGAAGTGCAATGTCTAAAGGCCAAACTGCAAGAGATGGAGCAACTTGTCCAGAGAAGAAGCTGGCTAGATCTCATCAGGTTCTGGCAATCCCAAGCACTAGAAGAGCACAAGTCAGCAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

172

Amino Acids

19.4

Weight (kDa)

11.03

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 163
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 99, 199
AgsI TTSAA 1 cut(s) 357
AjnI CCWGG 3 cut(s) 47, 92, 123
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 7 cut(s) 19, 117, 215, 224, 235, 314, 451
AluI AGCT 7 cut(s) 19, 117, 215, 224, 235, 314, 451
Alw21I GWGCWC 1 cut(s) 499
AlwI GGATC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 472
AoxI GGCC 2 cut(s) 50, 409
ApeKI GCWGC 2 cut(s) 224, 227
ApoI RAATTY 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 2 cut(s) 211, 214
BccI CCATC 1 cut(s) 419
BciT130I CCWGG 3 cut(s) 49, 94, 125
BfaI CTAG 6 cut(s) 29, 60, 303, 315, 456, 489
BfmI CTRYAG 1 cut(s) 228
BglII AGATCT 1 cut(s) 458
BisI GCNGC 2 cut(s) 225, 228
BlsI GCNGC 2 cut(s) 226, 229
Bme1390I CCNGG 3 cut(s) 49, 94, 125
BmrFI CCNGG 3 cut(s) 49, 94, 125
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 92, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 199
Bse3DI GCAATG 2 cut(s) 367, 405
BseBI CCWGG 3 cut(s) 49, 94, 125
BseDI CCNNGG 2 cut(s) 92, 123
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 99, 199
BseMI GCAATG 2 cut(s) 367, 405
BseXI GCAGC 2 cut(s) 211, 214
BshFI GGCC 2 cut(s) 52, 411
BsiHKAI GWGCWC 1 cut(s) 499
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 99, 199
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 52, 411
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 189, 305, 458
BspANI GGCC 2 cut(s) 52, 411
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 184
BspQI GCTCTTC 1 cut(s) 487
BsrDI GCAATG 2 cut(s) 367, 405
BssECI CCNNGG 2 cut(s) 92, 123
BssMI GATC 3 cut(s) 189, 305, 458
BssNI GRCGYC 1 cut(s) 160
Bst2UI CCWGG 3 cut(s) 49, 94, 125
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 487
BstACI GRCGYC 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 335, 453
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 3 cut(s) 192, 308, 461
BstMBI GATC 3 cut(s) 189, 305, 458
BstMWI GCNNNNNNNGC 2 cut(s) 221, 272
BstNI CCWGG 3 cut(s) 49, 94, 125
BstSCI CCNGG 3 cut(s) 47, 92, 123
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 211, 214
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 2 cut(s) 52, 411
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 335, 453
CaiI CAGNNNCTG 1 cut(s) 472
CfoI GCGC 1 cut(s) 333
DpnI GATC 3 cut(s) 191, 307, 460
DpnII GATC 3 cut(s) 189, 305, 458
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
EcoRII CCWGG 3 cut(s) 47, 92, 123
FaiI YATR 6 cut(s) 110, 166, 168, 200, 278, 285
FaqI GGGAC 1 cut(s) 116
Fnu4HI GCNGC 2 cut(s) 225, 228
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 225, 228
FspBI CTAG 6 cut(s) 29, 60, 303, 315, 456, 489
GlaI GCGC 1 cut(s) 332
GluI GCNGC 2 cut(s) 225, 228
HaeIII GGCC 2 cut(s) 52, 411
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 160
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 143, 310
Hpy188III TCNNGA 2 cut(s) 101, 440
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 5 cut(s) 230, 266, 292, 398, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 272
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 160
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 3 cut(s) 189, 305, 458
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 2 cut(s) 221, 428
Lsp1109I GCAGC 2 cut(s) 211, 214
MaeI CTAG 6 cut(s) 29, 60, 303, 315, 456, 489
MaeII ACGT 1 cut(s) 160
MalI GATC 3 cut(s) 191, 307, 460
MboI GATC 3 cut(s) 189, 305, 458
MboII GAAGA 4 cut(s) 218, 247, 457, 504
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 2 cut(s) 54, 352
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 4 cut(s) 70, 280, 316, 340
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 49, 94, 125
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 3 cut(s) 49, 94, 125
MwoI GCNNNNNNNGC 2 cut(s) 221, 272
NdeII GATC 3 cut(s) 189, 305, 458
PciSI GCTCTTC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 226, 229
Psp6I CCWGG 3 cut(s) 47, 92, 123
PspGI CCWGG 3 cut(s) 47, 92, 123
PstI CTGCAG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 225, 228
Sau3AI GATC 3 cut(s) 189, 305, 458
ScrFI CCNGG 3 cut(s) 49, 94, 125
SduI GDGCHC 1 cut(s) 499
SfcI CTRYAG 1 cut(s) 228
Sse9I AATT 2 cut(s) 54, 352
SspMI CTAG 6 cut(s) 29, 60, 303, 315, 456, 489
StyD4I CCNGG 3 cut(s) 47, 92, 123
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 1 cut(s) 163
TasI AATT 2 cut(s) 54, 352
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 2 cut(s) 224, 227
TspDTI ATGAA 2 cut(s) 219, 378
TspGWI ACGGA 1 cut(s) 182
XapI RAATTY 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 6 cut(s) 29, 60, 303, 315, 456, 489
ZraI GACGTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.