Rh5AG223700

Optic atrophy 3 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015835
Physical Location & Seq
Forward (+)
26614726 .. 26617698
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG223700.1

Sequence Viewer

Length: 636 bp
ATGCCCCTGTCCCTTGCAAAATTTCTTGCTGGTCAAGCTGCAGCTGCTGCTAGGAGCTCTTTTCTTCGACAAACGAGGCGGTACGGATCATCAACATCCTCATCATCGAGTCACTATCAGAGCACCACCATAATGCTTCCATTGATGAAACTCGGAACTCTGGCCATCAGAACAATTTCAAAGCCCATTGCTGCTCGCCTCAAAACACATGCTGCCGTGCACCCCAGGTTTCGTGCCGCCATCATCTGGATGGCCCAGACAAAGTATCGTTGGGCGACACAATTGCAAAGACGTGTGCAATATGGACGTGCAATAAATGTTGCGATCCGCCCTCTCGATGAAGCAAAAGCTATTGCAGCTGCTACGGATTTTCTCGGAGAACTTGTCATCTTCACTGTTGCAGGACTTGCTATTGTGTATGAGGTGAATCGGAGCTACAAATCAGAGGCTAAGAAGGAGGCACAACGCAAGCAAGAATTAGAGGAAGTAATCGAATTTCTATATAACAAGCATTGTTGTGATTCTAAAGAACTGCATGCTACTATAAGGAAATATCACTCTCAAACAGTCCCGAGGGTCATATCTAATCATTGCGGGATGTCGAAAGAAGATATTGGACAACCCTCACGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

211

Amino Acids

23.66

Weight (kDa)

10.16

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPA3 PF07047 49 - 163 1.6e-36 Optic atrophy 3 protein (OPA3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58150
fragaria_vesca FvH4_3g19140
malus_domestica MD11G1257000.v1.1
prunus_persica Prupe.4G173100_v2.0.a1
pyrus_communis pycom11g22710
rosa_chinensis RchiOBHm_Chr5g0032231
rosa_laevigata RLG00000033369
rosa_multiflora Rmu_sc0005375.1_g000001
rosa_roxburghii Rroxscaffold_1G00048230
rosa_rugosa Rorug05G0129800
rosa_samantha Rh5AG223700 Rh5BG224400 Rh5CG249700 Rh5DG229000
rosa_wichuraiana Rw5G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 246
AciI CCGC 4 cut(s) 79, 237, 328, 594
AclWI GGATC 2 cut(s) 94, 319
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 2 cut(s) 20, 494
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 1 cut(s) 180
AjiI CACGTC 2 cut(s) 293, 308
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 6 cut(s) 38, 44, 57, 350, 359, 435
AluI AGCT 6 cut(s) 38, 44, 57, 350, 359, 435
Alw21I GWGCWC 3 cut(s) 59, 125, 222
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 2 cut(s) 94, 319
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 3 cut(s) 162, 252, 629
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 8 cut(s) 38, 41, 44, 47, 191, 212, 356, 359
ApoI RAATTY 2 cut(s) 20, 494
Asp700I GAANNNNTTC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 164
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 3 cut(s) 59, 125, 222
BbvI GCAGC 8 cut(s) 25, 31, 34, 53, 178, 199, 346, 368
BccI CCATC 3 cut(s) 173, 244, 248
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 226
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 9 cut(s) 39, 42, 45, 48, 192, 213, 237, 357, 360
BlsI GCNGC 9 cut(s) 40, 43, 46, 49, 193, 214, 238, 358, 361
Bme1390I CCNGG 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 571
BmgBI CACGTC 2 cut(s) 293, 308
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 224, 572
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse3DI GCAATG 2 cut(s) 186, 589
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 224, 572
BseGI GGATG 3 cut(s) 95, 255, 603
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 2 cut(s) 186, 589
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 8 cut(s) 25, 31, 34, 53, 178, 199, 346, 368
BshFI GGCC 3 cut(s) 164, 254, 631
BsiHKAI GWGCWC 3 cut(s) 59, 125, 222
BsiHKCI CYCGRG 1 cut(s) 571
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 3 cut(s) 164, 254, 631
BsoBI CYCGRG 1 cut(s) 571
Bsp1286I GDGCHC 3 cut(s) 59, 125, 222
Bsp143I GATC 2 cut(s) 86, 324
BspACI CCGC 4 cut(s) 79, 237, 328, 594
BspANI GGCC 3 cut(s) 164, 254, 631
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 2 cut(s) 94, 319
BsrDI GCAATG 2 cut(s) 186, 589
BssECI CCNNGG 2 cut(s) 224, 572
BssMI GATC 2 cut(s) 86, 324
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 397, 568
BstAPI GCANNNNNTGC 2 cut(s) 47, 407
BstC8I GCNNGC 3 cut(s) 196, 470, 537
BstDEI CTNAG 1 cut(s) 450
BstF5I GGATG 3 cut(s) 95, 255, 603
BstKTI GATC 2 cut(s) 89, 327
BstMBI GATC 2 cut(s) 86, 324
BstMWI GCNNNNNNNGC 5 cut(s) 35, 44, 47, 356, 407
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 212, 539
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 8 cut(s) 25, 31, 34, 53, 178, 199, 346, 368
BsuRI GGCC 3 cut(s) 164, 254, 631
BtrI CACGTC 2 cut(s) 293, 308
BtsCI GGATG 3 cut(s) 95, 255, 603
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 3 cut(s) 196, 470, 537
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 82
CviAII CATG 2 cut(s) 209, 536
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 450
DpnI GATC 2 cut(s) 88, 326
DpnII GATC 2 cut(s) 86, 324
EaeI YGGCCR 1 cut(s) 162
EciI GGCGGA 1 cut(s) 317
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 2 cut(s) 212, 539
FaiI YATR 9 cut(s) 131, 210, 303, 420, 502, 504, 537, 545, 581
FaqI GGGAC 1 cut(s) 554
FatI CATG 2 cut(s) 208, 535
FauI CCCGC 1 cut(s) 587
Fnu4HI GCNGC 9 cut(s) 39, 42, 45, 48, 192, 213, 237, 357, 360
FokI GGATG 3 cut(s) 82, 262, 610
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 9 cut(s) 39, 42, 45, 48, 192, 213, 237, 357, 360
FspBI CTAG 1 cut(s) 51
GluI GCNGC 9 cut(s) 39, 42, 45, 48, 192, 213, 237, 357, 360
HaeIII GGCC 3 cut(s) 164, 254, 631
Hin1II CATG 2 cut(s) 212, 539
HinfI GANTC 3 cut(s) 109, 427, 521
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 6 cut(s) 120, 155, 170, 377, 432, 445
Hpy188III TCNNGA 3 cut(s) 247, 335, 571
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 2 cut(s) 397, 568
HpyCH4IV ACGT 2 cut(s) 292, 307
HpyCH4V TGCA 9 cut(s) 17, 41, 220, 286, 298, 311, 356, 401, 535
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 44, 47, 356, 407
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 2 cut(s) 292, 307
Hsp92II CATG 2 cut(s) 212, 539
Kzo9I GATC 2 cut(s) 86, 324
LmnI GCTCC 2 cut(s) 54, 432
LpnPI CCDG 8 cut(s) 15, 20, 146, 211, 232, 238, 269, 387
Lsp1109I GCAGC 8 cut(s) 25, 31, 34, 53, 178, 199, 346, 368
MaeI CTAG 1 cut(s) 51
MaeII ACGT 2 cut(s) 292, 307
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 88, 326
MboI GATC 2 cut(s) 86, 324
MboII GAAGA 3 cut(s) 56, 382, 620
MfeI CAATTG 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 59, 125, 222
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 5 cut(s) 20, 174, 281, 476, 494
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 118
Mox20I TGGCCA 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 164
MslI CAYNNNNRTG 3 cut(s) 131, 248, 516
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 2 cut(s) 44, 359
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 5 cut(s) 35, 44, 47, 356, 407
NdeII GATC 2 cut(s) 86, 324
NlaIII CATG 2 cut(s) 212, 539
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 2 cut(s) 212, 539
PaeI GCATGC 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 427, 521
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 9 cut(s) 40, 43, 46, 49, 193, 214, 238, 358, 361
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 1 cut(s) 253
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 47
PvuII CAGCTG 2 cut(s) 44, 359
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 3 cut(s) 131, 248, 516
SacI GAGCTC 1 cut(s) 59
SatI GCNGC 9 cut(s) 39, 42, 45, 48, 192, 213, 237, 357, 360
Sau3AI GATC 2 cut(s) 86, 324
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 3 cut(s) 59, 125, 222
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 3 cut(s) 131, 248, 516
SphI GCATGC 1 cut(s) 539
Sse9I AATT 5 cut(s) 20, 174, 281, 476, 494
SsiI CCGC 4 cut(s) 79, 237, 328, 594
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 397, 568
TaiI ACGT 2 cut(s) 295, 310
TaqI TCGA 5 cut(s) 67, 107, 336, 492, 602
TasI AATT 5 cut(s) 20, 174, 281, 476, 494
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 2 cut(s) 427, 521
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 8 cut(s) 38, 41, 44, 47, 191, 212, 356, 359
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 161, 354
TspGWI ACGGA 2 cut(s) 99, 380
TspRI CASTG 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 246
VneI GTGCAC 1 cut(s) 218
XapI RAATTY 2 cut(s) 20, 494
XceI RCATGY 2 cut(s) 212, 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.