AT3G58480

calmodulin-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011034
Physical Location & Seq
Forward (+)
21629072 .. 21632116
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58480.1

Sequence Viewer

Length: 1728 bp
ATGGAGACAAAGACCATTCTTCGATCAATCAGTTTTAATGACATTGACTCGGATTCAACCATAACTGAATCACCTGAAGCTAGAAAGACGCTATACAACAGATCCCTTAGCGGTAAAGGGACACAACGATCAAGAATTTCTCCAGGAGATGTGGAGAACAATTTCTCTATTAAACCTTTAACTTTTATGAAAGAAGATGATAGATATAAAATGCGGATATGGAAACCTGTTTGCGAAAACGAACATGCAAAAGAATTTTTAGCCTTGTTATTAGGTGATGGAACATATCAAGCTGCATTAAAGTTACAGAAAGTTTATAGAAGTTTTCGAACCAGAAGAAGGCTAGCTGATTGTGCTGTAGTCGTTGAGCAAAGATGGTGGAAGGTACTTGACTTTGCTGAACTTAAAAGAAGTTCTATATCGTTTTTTGAAATTGAGAAGCAAGAGACTGCAGTTTCACGCTGGTCTAGAGCAAGAACAAGAGCTGCTAAGGTTGGTAAAGGCTTATCAAAGGACGAGAAAGCTAGGAAGTTGGCTTTGCAGCACTGGCTTGAGGCAATTGATCCTCGACATCGATATGGCCACAATCTGCAATTCTATTATCATGCTTGGCTCCACTGTGACAGTAAACAACCCTTTTTCTACTGGCTTGACATAGGACAAGGAAAAGAATTGAACCACGAAAGATGTCCAAGATCAAAACTTTACCAACAAAGCATCAAGTATCTTGGTCCGACAGAAAGGGAGGCATATGAAGTTATAATCGAGGATGGGAAACTAATGTATAAGCAAAGTGGGATAGTTCTCGACACAAAAGAAGGTCCTCCTGACGCAAAGTGGATCTTTGTCCTAAGCGTATCTAAGATATTGTATGTTGGAATGAAGAAAAAGGGTAACTTTCAACACTCGAGTTTTCTAGCCGGGGGAGCTACATTATCTGCTGGAAGAATTGTGGTTGACGATGGTGTTCTTAAGGCAGTTTGGCCTCACAGTGGACATTATCTTCCAACAGAAGAGAATTTTCAGGCGTTCATGTCGTTTCTTAGGGAGAACAATGTAGACCTCGCCAATGTAAAGAAGAATCCAGATGAAGAAGATGGAGAAGCTCCTGCTAAGGTCAAGAGGATGCCTTCAAGAATCAAAGAGACCGAAGAAGAACATTGTGACTTTGTGGATGCTGAGACCGGTTTTAGTCCCAACACTAAGCCCAACAATCATGCAGAGCTACAAACATTATCAAGGTTCCATTCAAAACTTTCAAGACTGGATGAGATTCCAGACGAAGACGACAACATGATCGAGGAGGAACAGGATGATGAAGAAGAACCTGAAACCCCTTCAGAACAAGGGTATGAGACAGCAGAGGAGACATTCATAGCTGAGGAAGAGTTCACATATCCAAAATCAAACCTGTTCGATGAAGACATTGAAGATTACGAGAAGCCTGTCCTGAAGGAGAAGATAATGAGACGGATAGATTCACACAAAGGAATTAAATCTTACCAGTTAGCTGAGCGGCTACATTCGAGATGGAGTACAGGTGCAGGGCCTAGAATCAGTTGTATGAGAGATTACCCTTCAGAGCTACAATTTAGGGTTCTTGAGCAAGCTCATTTATCTCCAAGAGCTTCTTCAAATTCTTCTAAGATATCTCCTTTTGCCCCGGTTAGAACACGAGGAACAAGTCTTGGGAGAAGTCCTTTGGCCGAAGAACTTGAAAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

575

Amino Acids

66.37

Weight (kDa)

6.13

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58480
fragaria_vesca FvH4_6g21330 FvH4_6g21330 FvH4_6g21330
malus_domestica MD12G1050400.v1.1 MD14G1048900.v1.1
prunus_persica Prupe.7G086400_v2.0.a1
pyrus_communis pycom12g04490 pycom14g04000
rosa_chinensis RchiOBHm_Chr3g0477941
rosa_laevigata RLG00000023678
rosa_multiflora Rmu_sc0005991.1_g000009 Rmu_sc0028100.1_g000001
rosa_roxburghii Rroxscaffold_6G00403580
rosa_rugosa Rorug03G0164000
rosa_samantha Rh3AG214800 Rh3BG248400 Rh3CG242400 Rh3DG241800
rosa_wichuraiana Rw3G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 761
AccBSI CCGCTC 1 cut(s) 1516
AccI GTMKAC 1 cut(s) 1059
AciI CCGC 3 cut(s) 111, 214, 1516
AclWI GGATC 3 cut(s) 96, 557, 848
AcoI YGGCCR 2 cut(s) 580, 1704
AcsI RAATTY 4 cut(s) 135, 254, 1018, 1636
AcuI CTGAAG 4 cut(s) 96, 1323, 1472, 1563
AfaI GTAC 2 cut(s) 387, 1537
AfiI CCNNNNNNNGG 2 cut(s) 339, 992
AflII CTTAAG 1 cut(s) 971
AgeI ACCGGT 1 cut(s) 1184
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 1615, 1647
Alw26I GTCTC 6 cut(s) 440, 1139, 1175, 1349, 1361, 1462
AlwI GGATC 3 cut(s) 96, 557, 848
Ama87I CYCGRG 1 cut(s) 907
AoxI GGCC 4 cut(s) 580, 983, 1547, 1704
ApeKI GCWGC 3 cut(s) 293, 485, 541
ApoI RAATTY 4 cut(s) 135, 254, 1018, 1636
AsiGI ACCGGT 1 cut(s) 1184
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 3 cut(s) 731, 821, 1547
AsuC2I CCSGG 2 cut(s) 922, 1664
AsuHPI GGTGA 2 cut(s) 63, 287
AsuII TTCGAA 1 cut(s) 328
AsuNHI GCTAGC 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 907
AvaII GGWCC 2 cut(s) 731, 821
BalI TGGCCA 1 cut(s) 582
BauI CACGAG 1 cut(s) 1674
BbsI GAAGAC 2 cut(s) 1290, 1428
BbvCI CCTCAGC 1 cut(s) 1380
BbvI GCAGC 3 cut(s) 280, 472, 553
BccI CCATC 6 cut(s) 272, 369, 764, 956, 1091, 1524
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 2 cut(s) 922, 1664
BcoDI GTCTC 6 cut(s) 440, 1139, 1175, 1349, 1361, 1462
BfaI CTAG 6 cut(s) 81, 344, 468, 525, 917, 1551
BfmI CTRYAG 2 cut(s) 357, 450
BfrI CTTAAG 1 cut(s) 971
BisI GCNGC 4 cut(s) 294, 486, 542, 1517
BlpI GCTNAGC 1 cut(s) 1512
BlsI GCNGC 4 cut(s) 295, 487, 543, 1518
Bme1390I CCNGG 3 cut(s) 144, 922, 1664
Bme18I GGWCC 2 cut(s) 731, 821
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 3 cut(s) 731, 821, 1547
BmiI GGNNCC 2 cut(s) 614, 1244
BmrFI CCNGG 3 cut(s) 144, 922, 1664
BmsI GCATC 3 cut(s) 726, 1116, 1165
BmtI GCTAGC 1 cut(s) 347
BpiI GAAGAC 2 cut(s) 1290, 1428
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 5 cut(s) 107, 489, 851, 1113, 1380
Bpu1102I GCTNAGC 1 cut(s) 1512
Bpu14I TTCGAA 1 cut(s) 328
BpuEI CTTGAG 2 cut(s) 572, 1622
BpuMI CCSGG 2 cut(s) 922, 1664
Bsa29I ATCGAT 1 cut(s) 574
BsaI GGTCTC 2 cut(s) 1139, 1175
BsaJI CCNNGG 2 cut(s) 921, 1662
BsaWI WCCGGW 1 cut(s) 1184
BsaXI ACNNNNNCTCC 2 cut(s) 1525, 1555
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 992
Bse118I RCCGGY 1 cut(s) 1184
Bse1I ACTGG 4 cut(s) 551, 650, 1269, 1504
BseBI CCWGG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 574
BseDI CCNNGG 2 cut(s) 921, 1662
BseGI GGATG 5 cut(s) 775, 1131, 1180, 1273, 1318
BseLI CCNNNNNNNGG 2 cut(s) 339, 992
BseMII CTCAG 3 cut(s) 1170, 1371, 1503
BseNI ACTGG 4 cut(s) 551, 650, 1269, 1504
BseRI GAGGAG 2 cut(s) 1316, 1379
BseXI GCAGC 3 cut(s) 280, 472, 553
BsgI GTGCAG 1 cut(s) 1563
BshFI GGCC 4 cut(s) 582, 985, 1549, 1706
BshTI ACCGGT 1 cut(s) 1184
BshVI ATCGAT 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 3 cut(s) 921, 1185, 1664
BslFI GGGAC 2 cut(s) 133, 1179
BslI CCNNNNNNNGG 2 cut(s) 339, 992
BsmAI GTCTC 6 cut(s) 440, 1139, 1175, 1349, 1361, 1462
BsmBI CGTCTC 1 cut(s) 1462
BsmFI GGGAC 2 cut(s) 133, 1179
BsnI GGCC 4 cut(s) 582, 985, 1549, 1706
Bso31I GGTCTC 2 cut(s) 1139, 1175
BsoBI CYCGRG 1 cut(s) 907
Bsp119I TTCGAA 1 cut(s) 328
Bsp143I GATC 7 cut(s) 23, 101, 128, 562, 695, 840, 1296
Bsp1720I GCTNAGC 1 cut(s) 1512
BspACI CCGC 3 cut(s) 111, 214, 1516
BspANI GGCC 4 cut(s) 582, 985, 1549, 1706
BspCNI CTCAG 3 cut(s) 1171, 1372, 1504
BspDI ATCGAT 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 614, 1244
BspMAI CTGCAG 1 cut(s) 454
BspOI GCTAGC 1 cut(s) 347
BspPI GGATC 3 cut(s) 96, 557, 848
BspT104I TTCGAA 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 971
BspTNI GGTCTC 2 cut(s) 1139, 1175
BsrBI CCGCTC 1 cut(s) 1516
BsrFI RCCGGY 1 cut(s) 1184
BsrI ACTGG 4 cut(s) 551, 650, 1269, 1504
BssAI RCCGGY 1 cut(s) 1184
BssECI CCNNGG 2 cut(s) 921, 1662
BssMI GATC 7 cut(s) 23, 101, 128, 562, 695, 840, 1296
BssSI CACGAG 1 cut(s) 1674
Bst2BI CACGAG 1 cut(s) 1674
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 620, 626, 992
Bst6I CTCTTC 2 cut(s) 1008, 1380
BstAFI CTTAAG 1 cut(s) 971
BstBI TTCGAA 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 345, 1608
BstF5I GGATG 5 cut(s) 775, 1131, 1180, 1273, 1318
BstKTI GATC 7 cut(s) 26, 104, 131, 565, 698, 843, 1299
BstMAI GTCTC 6 cut(s) 440, 1139, 1175, 1349, 1361, 1462
BstMBI GATC 7 cut(s) 23, 101, 128, 562, 695, 840, 1296
BstMWI GCNNNNNNNGC 3 cut(s) 353, 547, 926
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 142, 920, 1662
BstSFI CTRYAG 2 cut(s) 357, 450
BstV1I GCAGC 3 cut(s) 280, 472, 553
BstV2I GAAGAC 2 cut(s) 1290, 1428
BstX2I RGATCY 2 cut(s) 101, 840
BstYI RGATCY 2 cut(s) 101, 840
Bsu15I ATCGAT 1 cut(s) 574
BsuRI GGCC 4 cut(s) 582, 985, 1549, 1706
BsuTUI ATCGAT 1 cut(s) 574
BtsCI GGATG 5 cut(s) 775, 1131, 1180, 1273, 1318
BtsIMutI CAGTG 3 cut(s) 544, 616, 997
Cac8I GCNNGC 2 cut(s) 345, 1608
Cfr10I RCCGGY 1 cut(s) 1184
Cfr13I GGNCC 3 cut(s) 731, 821, 1547
ClaI ATCGAT 1 cut(s) 574
CseI GACGC 2 cut(s) 97, 839
Csp6I GTAC 2 cut(s) 386, 1536
CspAI ACCGGT 1 cut(s) 1184
CspCI CAANNNNNGTGG 2 cut(s) 359, 394
CviAII CATG 5 cut(s) 245, 605, 1033, 1217, 1294
CviQI GTAC 2 cut(s) 386, 1536
DpnI GATC 7 cut(s) 25, 103, 130, 564, 697, 842, 1298
DpnII GATC 7 cut(s) 23, 101, 128, 562, 695, 840, 1296
EaeI YGGCCR 2 cut(s) 580, 1704
Eam1104I CTCTTC 2 cut(s) 1008, 1380
EarI CTCTTC 2 cut(s) 1008, 1380
Eco31I GGTCTC 2 cut(s) 1139, 1175
Eco32I GATATC 1 cut(s) 1650
Eco47I GGWCC 2 cut(s) 731, 821
Eco57I CTGAAG 4 cut(s) 96, 1323, 1472, 1563
Eco88I CYCGRG 1 cut(s) 907
EcoO109I RGGNCCY 2 cut(s) 821, 1547
EcoRII CCWGG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 1650
Esp3I CGTCTC 1 cut(s) 1462
FaeI CATG 5 cut(s) 248, 608, 1036, 1220, 1297
FalI AAGNNNNNCTT 6 cut(s) 827, 859, 881, 913, 1615, 1647
FaqI GGGAC 2 cut(s) 133, 1179
FatI CATG 5 cut(s) 244, 604, 1032, 1216, 1293
FauNDI CATATG 1 cut(s) 751
FblI GTMKAC 1 cut(s) 1059
Fnu4HI GCNGC 4 cut(s) 294, 486, 542, 1517
FokI GGATG 5 cut(s) 782, 1138, 1187, 1280, 1325
Fsp4HI GCNGC 4 cut(s) 294, 486, 542, 1517
FspBI CTAG 6 cut(s) 81, 344, 468, 525, 917, 1551
GluI GCNGC 4 cut(s) 294, 486, 542, 1517
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 4 cut(s) 582, 985, 1549, 1706
HapII CCGG 3 cut(s) 921, 1185, 1664
HgaI GACGC 2 cut(s) 97, 839
Hin1II CATG 5 cut(s) 248, 608, 1036, 1220, 1297
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HinfI GANTC 8 cut(s) 47, 53, 68, 1081, 1137, 1273, 1478, 1554
HpaII CCGG 3 cut(s) 921, 1185, 1664
HphI GGTGA 2 cut(s) 63, 287
Hpy166II GTNNAC 5 cut(s) 629, 958, 995, 1060, 1392
Hpy188I TCNGA 4 cut(s) 52, 735, 1342, 1582
Hpy8I GTNNAC 5 cut(s) 629, 958, 995, 1060, 1392
HpyAV CCTTC 7 cut(s) 333, 376, 812, 1140, 1347, 1447, 1587
HpyCH4III ACNGT 3 cut(s) 620, 626, 992
HpyCH4V TGCA 7 cut(s) 248, 296, 452, 541, 592, 1220, 1544
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 547, 926
Hsp92II CATG 5 cut(s) 248, 608, 1036, 1220, 1297
Kzo9I GATC 7 cut(s) 23, 101, 128, 562, 695, 840, 1296
LmnI GCTCC 3 cut(s) 618, 926, 1111
Lsp1109I GCAGC 3 cut(s) 280, 472, 553
LweI GCATC 3 cut(s) 726, 1116, 1165
MaeI CTAG 6 cut(s) 81, 344, 468, 525, 917, 1551
MaeIII GTNAC 4 cut(s) 303, 620, 893, 1163
MalI GATC 7 cut(s) 25, 103, 130, 564, 697, 842, 1298
MbiI CCGCTC 1 cut(s) 1516
MboI GATC 7 cut(s) 23, 101, 128, 562, 695, 840, 1296
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 2 cut(s) 101, 840
MlsI TGGCCA 1 cut(s) 582
MluNI TGGCCA 1 cut(s) 582
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 3 cut(s) 758, 856, 1031
Mox20I TGGCCA 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 582
MseI TTAA 7 cut(s) 36, 171, 179, 299, 405, 972, 1494
MslI CAYNNNNRTG 1 cut(s) 576
Msp20I TGGCCA 1 cut(s) 582
MspCI CTTAAG 1 cut(s) 971
MspI CCGG 3 cut(s) 921, 1185, 1664
MspR9I CCNGG 3 cut(s) 144, 922, 1664
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 353, 547, 926
NciI CCSGG 2 cut(s) 922, 1664
NdeI CATATG 1 cut(s) 751
NdeII GATC 7 cut(s) 23, 101, 128, 562, 695, 840, 1296
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 5 cut(s) 248, 608, 1036, 1220, 1297
NlaIV GGNNCC 2 cut(s) 614, 1244
NmuCI GTSAC 2 cut(s) 620, 1163
NspI RCATGY 1 cut(s) 248
NspV TTCGAA 1 cut(s) 328
PaeR7I CTCGAG 1 cut(s) 907
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 7 cut(s) 53, 68, 1081, 1137, 1273, 1478, 1554
PfoI TCCNGGA 1 cut(s) 142
PinAI ACCGGT 1 cut(s) 1184
PkrI GCNGC 4 cut(s) 295, 487, 543, 1518
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PpuMI RGGWCCY 1 cut(s) 821
PsiI TTATAA 1 cut(s) 761
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 614, 1244
PspPI GGNCC 3 cut(s) 731, 821, 1547
PspPPI RGGWCCY 1 cut(s) 821
PspXI VCTCGAGB 1 cut(s) 907
PstI CTGCAG 1 cut(s) 454
PsuI RGATCY 2 cut(s) 101, 840
RsaI GTAC 2 cut(s) 387, 1537
RsaNI GTAC 2 cut(s) 386, 1536
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 7 cut(s) 36, 171, 179, 299, 405, 972, 1494
SatI GCNGC 4 cut(s) 294, 486, 542, 1517
Sau3AI GATC 7 cut(s) 23, 101, 128, 562, 695, 840, 1296
Sau96I GGNCC 3 cut(s) 731, 821, 1547
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 3 cut(s) 144, 922, 1664
SfaNI GCATC 3 cut(s) 726, 1116, 1165
SfcI CTRYAG 2 cut(s) 357, 450
Sfr274I CTCGAG 1 cut(s) 907
SfuI TTCGAA 1 cut(s) 328
SinI GGWCC 2 cut(s) 731, 821
SlaI CTCGAG 1 cut(s) 907
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 4 cut(s) 551, 907, 971, 1601
SmoI CTYRAG 4 cut(s) 551, 907, 971, 1601
SsiI CCGC 3 cut(s) 111, 214, 1516
SspMI CTAG 6 cut(s) 81, 344, 468, 525, 917, 1551
StyD4I CCNGG 3 cut(s) 142, 920, 1662
TaaI ACNGT 3 cut(s) 620, 626, 992
TaqII GACCGA 1 cut(s) 1163
TatI WGTACW 1 cut(s) 1535
TauI GCSGC 1 cut(s) 1519
TfiI GAWTC 7 cut(s) 53, 68, 1081, 1137, 1273, 1478, 1554
Tru1I TTAA 7 cut(s) 36, 171, 179, 299, 405, 972, 1494
Tru9I TTAA 7 cut(s) 36, 171, 179, 299, 405, 972, 1494
TscAI CASTG 3 cut(s) 551, 623, 997
TseFI GTSAC 2 cut(s) 620, 1163
TseI GCWGC 3 cut(s) 293, 485, 541
Tsp45I GTSAC 2 cut(s) 620, 1163
TspDTI ATGAA 8 cut(s) 203, 768, 896, 1021, 1104, 1332, 1363, 1434
TspGWI ACGGA 1 cut(s) 1486
TspRI CASTG 3 cut(s) 551, 623, 997
Vha464I CTTAAG 1 cut(s) 971
VpaK11BI GGWCC 2 cut(s) 731, 821
XapI RAATTY 4 cut(s) 135, 254, 1018, 1636
XbaI TCTAGA 1 cut(s) 467
XceI RCATGY 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 1059
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 6 cut(s) 81, 344, 468, 525, 917, 1551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.