Rmu_sc0028100.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028100.1
OG0011034
Physical Location & Seq
Forward (+)
1738 .. 4340
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028100.1_g000001.1.cds

Sequence Viewer

Length: 1674 bp
atgatatatgacgaatcgcttagcatgaaagcgaaggaattagacaccaagttggtttgtcaaacaccttcaccagaagatatggaaaacaatgtgtctgccagagcaacaagtgatggtaaagaccgattggagacatcacatcaaaatggtaactcctccagtgggaaaggaactacacataggtaccaggcggcattaaagttacagaaagtgtacaagagtttccggataagaagacagcttgcagattgtgcaattcttgcggagcagagatggtggaaggtgttagattttgctgaactcaaaaggagctctatatcatttttcgacattgagaagcctgaaacagctgtttctcgctgggcaagagcaagaaccagagctgccaaggttggaaagggtttgtctaaggataaaaaggctcgtaaacttgctttgcagcattggcttgaggcaattgatccccgacatcggtatggacataatcttcacttctactatgccaaatggctccactgtgagagtaaacagcccttcttttattggcttgatataggggagggaagagaaatcacgcatgaagcatgtcctcggtcaaagcttcaagcacaatgcatcaagtatcttggcccggtagaaaggaaggattacgaagttgtagtggagggtgggaagtttgtttacaaggagagtggagtgcttcttgatacaacaaaaggccccaaagaaacaaagtggatatttgtcctaagtgtgtccaagaacttatatgttggacagaagagcaagggtacttttcagcattcaagtttcttggcaggaggagccacattgtctgctggaagattggtagttgaaaatggaattctaaagtcagtttggcctcacagtgggcattatctcccaacagaagaaaactttcaggaactcatgtcattccttatggaaaacaatgtggatctcactaatgtaaagaaaactgcagttgacgatgaagaaggaggcgttttaagcaaaaagagcagtaacataggagtccgaaacagcccacgaaaagcagattcatctaaagatactataacaacaaatgctgaaggcacagtggaagagagtacttcgagaaatgaacagtctgattgtgcagaaaatcctcctcttttgtcaagattaccagaacgattctgctcaaagatagctaaacttgaaataccagaaaaagaagacgtgtttgacgttttcaaggaacaacctccaataacttgtcgcgagtattttctagactctgattctgattctgaggatggttatgaaacagctgaagaatcagtcttgacagaggaagattttatggtctcgaaactgaacttgtttgatgaagatgcacatgaagaagatgaaaagccaatatcaaaagaaagaattatgcaaaggattgattcacataaaggaatgaattcataccagttgggtcagcatttgacctcaagatggagcacaggagctggccctcggatcggttgcatgagggactatcctccagagcttcaattccgggttctacagcaagcctacttgtctccaaggccagtagaaagaagtccgccgatacctttacataaagaaacaatgcaccccctatctcaaagaccaccaaaagacagtacaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

557

Amino Acids

63.41

Weight (kDa)

6.78

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58480
fragaria_vesca FvH4_6g21330 FvH4_6g21330 FvH4_6g21330
malus_domestica MD12G1050400.v1.1 MD14G1048900.v1.1
prunus_persica Prupe.7G086400_v2.0.a1
pyrus_communis pycom12g04490 pycom14g04000
rosa_chinensis RchiOBHm_Chr3g0477941
rosa_laevigata RLG00000023678
rosa_multiflora Rmu_sc0005991.1_g000009 Rmu_sc0028100.1_g000001
rosa_roxburghii Rroxscaffold_6G00403580
rosa_rugosa Rorug03G0164000
rosa_samantha Rh3AG214800 Rh3BG248400 Rh3CG242400 Rh3DG241800
rosa_wichuraiana Rw3G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 186
AccII CGCG 1 cut(s) 1269
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 3 cut(s) 194, 266, 1604
AclWI GGATC 3 cut(s) 458, 969, 1523
AcsI RAATTY 2 cut(s) 867, 1456
AcuI CTGAAG 2 cut(s) 1116, 1341
AfaI GTAC 5 cut(s) 188, 218, 796, 1117, 1666
AfiI CCNNNNNNNGG 5 cut(s) 165, 474, 893, 1491, 1517
AflIII ACRYGT 1 cut(s) 1227
AgsI TTSAA 6 cut(s) 608, 810, 860, 1208, 1243, 1550
AjiI CACGTC 1 cut(s) 1228
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 9 cut(s) 244, 315, 353, 386, 604, 1199, 1319, 1505, 1546
AluI AGCT 9 cut(s) 244, 315, 353, 386, 604, 1199, 1319, 1505, 1546
Alw21I GWGCWC 2 cut(s) 317, 1499
Alw26I GTCTC 3 cut(s) 128, 1360, 1584
AlwI GGATC 3 cut(s) 458, 969, 1523
AlwNI CAGNNNCTG 1 cut(s) 1505
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 5 cut(s) 631, 721, 884, 1507, 1586
ApeKI GCWGC 2 cut(s) 386, 442
ApoI RAATTY 2 cut(s) 867, 1456
Asp700I GAANNNNTTC 2 cut(s) 921, 1456
Asp718I GGTACC 1 cut(s) 186
AspS9I GGNCC 3 cut(s) 632, 722, 1508
AsuC2I CCSGG 2 cut(s) 635, 1556
AsuHPI GGTGA 1 cut(s) 63
BaeI ACNNNNGTAYC 2 cut(s) 170, 203
BanI GGYRCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 668, 700
BbsI GAAGAC 2 cut(s) 244, 1230
Bbv12I GWGCWC 2 cut(s) 317, 1499
BbvI GCAGC 2 cut(s) 373, 454
BccI CCATC 4 cut(s) 110, 270, 1298, 1485
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 2 cut(s) 635, 1556
BcoDI GTCTC 3 cut(s) 128, 1360, 1584
BfaI CTAG 1 cut(s) 1280
BfmI CTRYAG 2 cut(s) 984, 1562
BisI GCNGC 3 cut(s) 195, 387, 443
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 3 cut(s) 196, 388, 444
BmcAI AGTACT 1 cut(s) 1117
Bme1390I CCNGG 3 cut(s) 191, 635, 1556
BmgBI CACGTC 1 cut(s) 1228
BmgT120I GGNCC 3 cut(s) 632, 722, 1508
BmiI GGNNCC 4 cut(s) 188, 515, 724, 829
BmrFI CCNGG 3 cut(s) 191, 635, 1556
BmsI GCATC 2 cut(s) 627, 1372
BpiI GAAGAC 2 cut(s) 244, 1230
BpmI CTGGAG 2 cut(s) 145, 1524
Bpu1102I GCTNAGC 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 473, 1471
BpuMI CCSGG 2 cut(s) 635, 1556
BsaI GGTCTC 1 cut(s) 1360
BsaJI CCNNGG 4 cut(s) 390, 593, 1511, 1583
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 474, 893, 1491, 1517
Bse1I ACTGG 3 cut(s) 162, 1465, 1589
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 4 cut(s) 390, 593, 1511, 1583
BseGI GGATG 1 cut(s) 1309
BseLI CCNNNNNNNGG 5 cut(s) 165, 474, 893, 1491, 1517
BseMII CTCAG 1 cut(s) 1290
BseNI ACTGG 3 cut(s) 162, 1465, 1589
BseRI GAGGAG 3 cut(s) 148, 840, 1146
BseXI GCAGC 2 cut(s) 373, 454
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 1164
Bsh1236I CGCG 1 cut(s) 1269
BshFI GGCC 5 cut(s) 633, 723, 886, 1509, 1588
BshNI GGYRCC 1 cut(s) 186
BsiHKAI GWGCWC 2 cut(s) 317, 1499
BsiSI CCGG 3 cut(s) 229, 635, 1555
BslFI GGGAC 1 cut(s) 1544
BslI CCNNNNNNNGG 5 cut(s) 165, 474, 893, 1491, 1517
BsmAI GTCTC 3 cut(s) 128, 1360, 1584
BsmFI GGGAC 1 cut(s) 1544
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 5 cut(s) 633, 723, 886, 1509, 1588
Bso31I GGTCTC 1 cut(s) 1360
Bsp1286I GDGCHC 2 cut(s) 317, 1499
Bsp13I TCCGGA 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 3 cut(s) 463, 961, 1515
Bsp1720I GCTNAGC 1 cut(s) 20
Bsp68I TCGCGA 1 cut(s) 1269
BspACI CCGC 3 cut(s) 194, 266, 1604
BspANI GGCC 5 cut(s) 633, 723, 886, 1509, 1588
BspCNI CTCAG 1 cut(s) 1291
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 1 cut(s) 1269
BspLI GGNNCC 4 cut(s) 188, 515, 724, 829
BspMAI CTGCAG 1 cut(s) 988
BspPI GGATC 3 cut(s) 458, 969, 1523
BspQI GCTCTTC 1 cut(s) 779
BspT107I GGYRCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 1360
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 3 cut(s) 162, 1465, 1589
BssECI CCNNGG 4 cut(s) 390, 593, 1511, 1583
BssMI GATC 3 cut(s) 463, 961, 1515
BssT1I CCWWGG 2 cut(s) 390, 1583
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 5 cut(s) 521, 893, 1105, 1134, 1664
Bst6I CTCTTC 3 cut(s) 562, 779, 1104
BstAPI GCANNNNNTGC 2 cut(s) 254, 263
BstAUI TGTACA 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 246, 1507, 1569
BstDEI CTNAG 4 cut(s) 20, 411, 752, 1299
BstF5I GGATG 1 cut(s) 1309
BstFNI CGCG 1 cut(s) 1269
BstKTI GATC 3 cut(s) 466, 964, 1518
BstMAI GTCTC 3 cut(s) 128, 1360, 1584
BstMBI GATC 3 cut(s) 463, 961, 1515
BstMWI GCNNNNNNNGC 6 cut(s) 254, 263, 448, 827, 1014, 1023
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 591
BstSCI CCNGG 3 cut(s) 189, 633, 1554
BstSFI CTRYAG 2 cut(s) 984, 1562
BstUI CGCG 1 cut(s) 1269
BstV1I GCAGC 2 cut(s) 373, 454
BstV2I GAAGAC 2 cut(s) 244, 1230
BstX2I RGATCY 1 cut(s) 961
BstYI RGATCY 1 cut(s) 961
BsuRI GGCC 5 cut(s) 633, 723, 886, 1509, 1588
BtrI CACGTC 1 cut(s) 1228
BtsCI GGATG 1 cut(s) 1309
BtsIMutI CAGTG 4 cut(s) 169, 517, 898, 1110
BtuMI TCGCGA 1 cut(s) 1269
Cac8I GCNNGC 3 cut(s) 246, 1507, 1569
CaiI CAGNNNCTG 1 cut(s) 1505
Cfr13I GGNCC 3 cut(s) 632, 722, 1508
Csp6I GTAC 5 cut(s) 187, 217, 795, 1116, 1665
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 6 cut(s) 25, 581, 588, 934, 1388, 1525
CviQI GTAC 5 cut(s) 187, 217, 795, 1116, 1665
DdeI CTNAG 4 cut(s) 20, 411, 752, 1299
DpnI GATC 3 cut(s) 465, 963, 1517
DpnII GATC 3 cut(s) 463, 961, 1515
Eam1104I CTCTTC 3 cut(s) 562, 779, 1104
EarI CTCTTC 3 cut(s) 562, 779, 1104
EciI GGCGGA 1 cut(s) 1593
Ecl136II GAGCTC 1 cut(s) 315
Eco130I CCWWGG 2 cut(s) 390, 1583
Eco24I GRGCYC 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 1360
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 1116, 1341
EcoICRI GAGCTC 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 722
EcoRI GAATTC 2 cut(s) 867, 1456
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 390, 1583
EcoT22I ATGCAT 1 cut(s) 620
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 2 cut(s) 390, 1583
FaeI CATG 6 cut(s) 28, 584, 591, 937, 1391, 1528
FaqI GGGAC 1 cut(s) 1544
FatI CATG 6 cut(s) 24, 580, 587, 933, 1387, 1524
Fnu4HI GCNGC 3 cut(s) 195, 387, 443
FokI GGATG 1 cut(s) 1316
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 195, 387, 443
FspBI CTAG 1 cut(s) 1280
GluI GCNGC 3 cut(s) 195, 387, 443
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 2 cut(s) 145, 1524
HaeIII GGCC 5 cut(s) 633, 723, 886, 1509, 1588
HapII CCGG 3 cut(s) 229, 635, 1555
Hin1II CATG 6 cut(s) 28, 584, 591, 937, 1391, 1528
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 9 cut(s) 14, 1038, 1064, 1182, 1283, 1289, 1295, 1325, 1439
HpaII CCGG 3 cut(s) 229, 635, 1555
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 6 cut(s) 217, 431, 530, 685, 991, 1667
Hpy188I TCNGA 6 cut(s) 1043, 1138, 1288, 1294, 1300, 1515
Hpy8I GTNNAC 6 cut(s) 217, 431, 530, 685, 991, 1667
HpyAV CCTTC 7 cut(s) 28, 78, 277, 547, 640, 995, 1091
HpyCH4III ACNGT 5 cut(s) 521, 893, 1105, 1134, 1664
HpyCH4IV ACGT 2 cut(s) 1227, 1236
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 263, 448, 827, 1014, 1023
HpyF3I CTNAG 4 cut(s) 20, 411, 752, 1299
HpySE526I ACGT 2 cut(s) 1227, 1236
Hsp92II CATG 6 cut(s) 28, 584, 591, 937, 1391, 1528
Kpn2I TCCGGA 1 cut(s) 228
KpnI GGTACC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 463, 961, 1515
LguI GCTCTTC 1 cut(s) 779
LmnI GCTCC 6 cut(s) 268, 312, 519, 827, 1494, 1502
Lsp1109I GCAGC 2 cut(s) 373, 454
LweI GCATC 2 cut(s) 627, 1372
MaeI CTAG 1 cut(s) 1280
MaeII ACGT 2 cut(s) 1227, 1236
MaeIII GTNAC 3 cut(s) 152, 204, 1028
MalI GATC 3 cut(s) 465, 963, 1517
MboI GATC 3 cut(s) 463, 961, 1515
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 2 cut(s) 317, 1499
MluCI AATT 7 cut(s) 38, 258, 459, 867, 1422, 1456, 1550
MlyI GAGTC 2 cut(s) 1047, 1277
MmeI TCCRAC 2 cut(s) 376, 757
Mph1103I ATGCAT 1 cut(s) 620
MroI TCCGGA 1 cut(s) 228
MroXI GAANNNNTTC 2 cut(s) 921, 1456
MseI TTAA 2 cut(s) 200, 1013
MslI CAYNNNNRTG 2 cut(s) 147, 477
MspA1I CMGCKG 2 cut(s) 353, 1319
MspI CCGG 3 cut(s) 229, 635, 1555
MspR9I CCNGG 3 cut(s) 191, 635, 1556
MunI CAATTG 1 cut(s) 459
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 1269
MwoI GCNNNNNNNGC 6 cut(s) 254, 263, 448, 827, 1014, 1023
NciI CCSGG 2 cut(s) 635, 1556
NdeII GATC 3 cut(s) 463, 961, 1515
NlaIII CATG 6 cut(s) 28, 584, 591, 937, 1391, 1528
NlaIV GGNNCC 4 cut(s) 188, 515, 724, 829
NruI TCGCGA 1 cut(s) 1269
NsiI ATGCAT 1 cut(s) 620
NspI RCATGY 1 cut(s) 591
PciSI GCTCTTC 1 cut(s) 779
PcsI WCGNNNNNNNCGW 1 cut(s) 1233
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 2 cut(s) 921, 1456
PfeI GAWTC 7 cut(s) 14, 1064, 1182, 1289, 1295, 1325, 1439
PkrI GCNGC 3 cut(s) 196, 388, 444
PleI GAGTC 2 cut(s) 1046, 1277
PpsI GAGTC 2 cut(s) 1046, 1277
Psp124BI GAGCTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 4 cut(s) 188, 515, 724, 829
PspPI GGNCC 3 cut(s) 632, 722, 1508
PstI CTGCAG 1 cut(s) 988
PstNI CAGNNNCTG 1 cut(s) 1505
PsuI RGATCY 1 cut(s) 961
PvuII CAGCTG 2 cut(s) 353, 1319
RruI TCGCGA 1 cut(s) 1269
RsaI GTAC 5 cut(s) 188, 218, 796, 1117, 1666
RsaNI GTAC 5 cut(s) 187, 217, 795, 1116, 1665
RseI CAYNNNNRTG 2 cut(s) 147, 477
SacI GAGCTC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 779
SaqAI TTAA 2 cut(s) 200, 1013
SatI GCNGC 3 cut(s) 195, 387, 443
Sau3AI GATC 3 cut(s) 463, 961, 1515
Sau96I GGNCC 3 cut(s) 632, 722, 1508
ScaI AGTACT 1 cut(s) 1117
SchI GAGTC 2 cut(s) 1047, 1277
ScrFI CCNGG 3 cut(s) 191, 635, 1556
SduI GDGCHC 2 cut(s) 317, 1499
SfaNI GCATC 2 cut(s) 627, 1372
SfcI CTRYAG 2 cut(s) 984, 1562
SmiMI CAYNNNNRTG 2 cut(s) 147, 477
SmlI CTYRAG 2 cut(s) 452, 1486
SmoI CTYRAG 2 cut(s) 452, 1486
Sse9I AATT 7 cut(s) 38, 258, 459, 867, 1422, 1456, 1550
SsiI CCGC 3 cut(s) 194, 266, 1604
SspMI CTAG 1 cut(s) 1280
SstI GAGCTC 1 cut(s) 317
StyD4I CCNGG 3 cut(s) 189, 633, 1554
StyI CCWWGG 2 cut(s) 390, 1583
TaaI ACNGT 5 cut(s) 521, 893, 1105, 1134, 1664
TaiI ACGT 2 cut(s) 1230, 1239
TaqI TCGA 3 cut(s) 330, 1121, 1358
TaqII GACCGA 2 cut(s) 141, 585
TasI AATT 7 cut(s) 38, 258, 459, 867, 1422, 1456, 1550
TatI WGTACW 3 cut(s) 216, 1115, 1664
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 7 cut(s) 14, 1064, 1182, 1289, 1295, 1325, 1439
Tru1I TTAA 2 cut(s) 200, 1013
Tru9I TTAA 2 cut(s) 200, 1013
TscAI CASTG 4 cut(s) 169, 524, 898, 1110
TseI GCWGC 2 cut(s) 386, 442
TspRI CASTG 4 cut(s) 169, 524, 898, 1110
XapI RAATTY 2 cut(s) 867, 1456
XbaI TCTAGA 1 cut(s) 1279
XceI RCATGY 1 cut(s) 591
XmnI GAANNNNTTC 2 cut(s) 921, 1456
XspI CTAG 1 cut(s) 1280
ZrmI AGTACT 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.