Rroxscaffold_6G00403580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011034
Physical Location & Seq
Reverse (-)
26077038 .. 26079634
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403580.1

Sequence Viewer

Length: 1641 bp
ATGATATATGACGAATCGCTTAGCATGAAAGCAAAGGAATTAGACACCAAGTTGGTTTGTCAAACACCTTCACCAGAAGATATGGAAAACAATGTGTCTGCCAGAGCAACAAGTGATAGTAAAGACCGATTGGAGACATCACATCAAAATGGTAAGTCCTCCAGTGGGAAAGGAACTACACATAGGTACCAGGCTGCATTAAAGTTACAGAAAGTGTACAAGAGTTTCCGGATAAGAAGACAGCTTGCAGATTGTGCAATTCTTGCGGAGCAGAGATGGTATGTAACTATTGAACATTCATCCTGCAAGTTTCAGCTTTTGGACAACAAAATAATCATGCATGGTACCAGAGCAAACAGTTTATACATGTGGAAGGTGTTAGATTTTGCTGAACTCAAAAGGAGCTCTATATCATTTTTCGACATTGAGAAGCCTGAAACAGCTGTTTCTCGCTGGGCAAGAGCAAGAACCAGAGCTGCCAAGGTAAGTGTTATACTTGAGGTAAAATTCTTTGACCTGTACTGCTCTATGATGGTTCTGAATTCATCCGTTGCACATCTTTTGAAGGTTGGAAAGGGTTTGTCTAAGGATAAAAAGGCTCGTAAACTTGCTTTGCAGCATTGGCTTGAGGCAATTGATCCCCGACATCGGTATGGACATAATCTTCACTTCTACTATGCCAAATGGCTCCACTGTGAGAGTAAACAGCCCTTCTTTTATTGGCTTGATATAGGGGAGGGAAGAGAAATCACCCATGAAGCATGTCCTCGGTCAAAGCTTCAAGCACAATGCATCAAGTATCTTGGCCCGGTAGAAAGGAAGGATTACGAAGTTGTAGTGGAGGGTGGGAAGTTTGTTTACAAGGAGAGTGGAGTGCTTCTTGATACAACAAAAGGCCCCAAAGAAACAAAGTGGATATTTGTCCTAAGTGTGTCCAAGAACTTATATGTTGGACAGAAGAGCAAGGGTACTTTTCAGCATTCAAGTTTCTTGGCAGGAGGAGCCACATTGTCTGCTGGAAGATTGGTAGTTGAAAATGGAATTCTAAAGTCAGTTTGGCCTCACAGTGGGCATTATCTCCCAACAGAAGAAAACTTTCAGGAACTCATGTCATTCCTTATGGAAAACAATGTGGATCTCACTAATGTAAAGATAGCTAAACTTGAAATACCAGAAAAAGAAGACGTGTTTGACGTTTTCAAGGAACAACCTCCAATAACTTGTCGCGAGTATTTTCTAGACTCTGATTCTGATTCTGAGGATGGTTATGAAACAGCGGAAGAATCAGTCTTGACAGAGGAAGATTTTATGGTCTCGAAACTGAACTTGTTTGATGAAGATGCACATGAAGAAGATGAAAAGCCAATATCAAAAGAAAGAATTATGCAAAGGATTGATTCACATAAAGGAATGAATTCATACCAGTTGGGTCAGCATTTGACCTCAAGATGGAGCACAGGAGCTGGCCCTCGGATCGGTTGCATGAGGGACTATCCTCCAGAGCTTCAATTCCGGGTTCTACAGCAAGCCTACTTGTCTCCAAGGCCAGTAGAAAGAAGTCCGCCGATACCTTTACATAAAGAAACAAGGGTTGCACCCCCTATCTCAAAGACCACCAAAAGACAGTACACCATAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

546

Amino Acids

62.69

Weight (kDa)

8.48

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58480
fragaria_vesca FvH4_6g21330 FvH4_6g21330 FvH4_6g21330
malus_domestica MD12G1050400.v1.1 MD14G1048900.v1.1
prunus_persica Prupe.7G086400_v2.0.a1
pyrus_communis pycom12g04490 pycom14g04000
rosa_chinensis RchiOBHm_Chr3g0477941
rosa_laevigata RLG00000023678
rosa_multiflora Rmu_sc0005991.1_g000009 Rmu_sc0028100.1_g000001
rosa_roxburghii Rroxscaffold_6G00403580
rosa_rugosa Rorug03G0164000
rosa_samantha Rh3AG214800 Rh3BG248400 Rh3CG242400 Rh3DG241800
rosa_wichuraiana Rw3G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 186, 344
AccB1I GGYRCC 2 cut(s) 186, 344
AccII CGCG 1 cut(s) 1227
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 3 cut(s) 266, 1277, 1562
AclWI GGATC 3 cut(s) 632, 1143, 1481
AcsI RAATTY 4 cut(s) 506, 541, 1041, 1414
AfaI GTAC 6 cut(s) 188, 218, 346, 521, 970, 1628
AfiI CCNNNNNNNGG 5 cut(s) 165, 648, 1067, 1449, 1475
AflIII ACRYGT 2 cut(s) 366, 1185
AgsI TTSAA 8 cut(s) 293, 565, 782, 984, 1034, 1166, 1201, 1508
AjiI CACGTC 1 cut(s) 1186
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 9 cut(s) 244, 316, 405, 443, 476, 778, 1157, 1463, 1504
AluI AGCT 9 cut(s) 244, 316, 405, 443, 476, 778, 1157, 1463, 1504
Alw21I GWGCWC 2 cut(s) 407, 1457
Alw26I GTCTC 3 cut(s) 128, 1318, 1542
AlwI GGATC 3 cut(s) 632, 1143, 1481
AlwNI CAGNNNCTG 1 cut(s) 1463
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 5 cut(s) 805, 895, 1058, 1465, 1544
ApeKI GCWGC 3 cut(s) 194, 476, 616
ApoI RAATTY 4 cut(s) 506, 541, 1041, 1414
Asp700I GAANNNNTTC 2 cut(s) 1095, 1414
Asp718I GGTACC 2 cut(s) 186, 344
AspS9I GGNCC 3 cut(s) 806, 896, 1466
AsuC2I CCSGG 2 cut(s) 809, 1514
AsuHPI GGTGA 2 cut(s) 63, 742
BaeI ACNNNNGTAYC 2 cut(s) 170, 203
BanI GGYRCC 2 cut(s) 186, 344
BanII GRGCYC 1 cut(s) 407
BarI GAAGNNNNNNTAC 2 cut(s) 842, 874
BbsI GAAGAC 2 cut(s) 244, 1188
Bbv12I GWGCWC 2 cut(s) 407, 1457
BbvI GCAGC 3 cut(s) 181, 463, 628
BccI CCATC 4 cut(s) 270, 526, 1256, 1443
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 2 cut(s) 809, 1514
BcoDI GTCTC 3 cut(s) 128, 1318, 1542
BfaI CTAG 1 cut(s) 1238
BfmI CTRYAG 1 cut(s) 1520
BisI GCNGC 3 cut(s) 195, 477, 617
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 3 cut(s) 196, 478, 618
Bme1390I CCNGG 3 cut(s) 191, 809, 1514
BmgBI CACGTC 1 cut(s) 1186
BmgT120I GGNCC 3 cut(s) 806, 896, 1466
BmiI GGNNCC 5 cut(s) 188, 346, 689, 898, 1003
BmrFI CCNGG 3 cut(s) 191, 809, 1514
BmsI GCATC 2 cut(s) 801, 1330
BpiI GAAGAC 2 cut(s) 244, 1188
BpmI CTGGAG 2 cut(s) 145, 1482
Bpu1102I GCTNAGC 1 cut(s) 20
BpuEI CTTGAG 3 cut(s) 518, 647, 1429
BpuMI CCSGG 2 cut(s) 809, 1514
BsaI GGTCTC 1 cut(s) 1318
BsaJI CCNNGG 4 cut(s) 480, 767, 1469, 1541
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 648, 1067, 1449, 1475
Bse1I ACTGG 3 cut(s) 162, 1423, 1547
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 4 cut(s) 480, 767, 1469, 1541
BseGI GGATG 3 cut(s) 299, 545, 1267
BseLI CCNNNNNNNGG 5 cut(s) 165, 648, 1067, 1449, 1475
BseMII CTCAG 1 cut(s) 1248
BseNI ACTGG 3 cut(s) 162, 1423, 1547
BseRI GAGGAG 1 cut(s) 1014
BseXI GCAGC 3 cut(s) 181, 463, 628
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 1227
BshFI GGCC 5 cut(s) 807, 897, 1060, 1467, 1546
BshNI GGYRCC 2 cut(s) 186, 344
BsiHKAI GWGCWC 2 cut(s) 407, 1457
BsiSI CCGG 3 cut(s) 229, 809, 1513
BslFI GGGAC 1 cut(s) 1502
BslI CCNNNNNNNGG 5 cut(s) 165, 648, 1067, 1449, 1475
BsmAI GTCTC 3 cut(s) 128, 1318, 1542
BsmFI GGGAC 1 cut(s) 1502
BsmI GAATGC 1 cut(s) 979
BsnI GGCC 5 cut(s) 807, 897, 1060, 1467, 1546
Bso31I GGTCTC 1 cut(s) 1318
Bsp1286I GDGCHC 2 cut(s) 407, 1457
Bsp13I TCCGGA 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 3 cut(s) 637, 1135, 1473
Bsp1720I GCTNAGC 1 cut(s) 20
Bsp68I TCGCGA 1 cut(s) 1227
BspACI CCGC 3 cut(s) 266, 1277, 1562
BspANI GGCC 5 cut(s) 807, 897, 1060, 1467, 1546
BspCNI CTCAG 1 cut(s) 1249
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 1 cut(s) 1227
BspLI GGNNCC 5 cut(s) 188, 346, 689, 898, 1003
BspPI GGATC 3 cut(s) 632, 1143, 1481
BspQI GCTCTTC 1 cut(s) 953
BspT107I GGYRCC 2 cut(s) 186, 344
BspTNI GGTCTC 1 cut(s) 1318
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 3 cut(s) 162, 1423, 1547
BssECI CCNNGG 4 cut(s) 480, 767, 1469, 1541
BssMI GATC 3 cut(s) 637, 1135, 1473
BssT1I CCWWGG 2 cut(s) 480, 1541
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 4 cut(s) 359, 695, 1067, 1626
Bst6I CTCTTC 2 cut(s) 736, 953
BstAPI GCANNNNNTGC 2 cut(s) 254, 263
BstAUI TGTACA 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 246, 1465, 1527
BstDEI CTNAG 4 cut(s) 20, 585, 926, 1257
BstF5I GGATG 3 cut(s) 299, 545, 1267
BstFNI CGCG 1 cut(s) 1227
BstKTI GATC 3 cut(s) 640, 1138, 1476
BstMAI GTCTC 3 cut(s) 128, 1318, 1542
BstMBI GATC 3 cut(s) 637, 1135, 1473
BstMWI GCNNNNNNNGC 4 cut(s) 254, 263, 622, 1001
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 370, 765
BstSCI CCNGG 3 cut(s) 189, 807, 1512
BstSFI CTRYAG 1 cut(s) 1520
BstUI CGCG 1 cut(s) 1227
BstV1I GCAGC 3 cut(s) 181, 463, 628
BstV2I GAAGAC 2 cut(s) 244, 1188
BstX2I RGATCY 1 cut(s) 1135
BstYI RGATCY 1 cut(s) 1135
BsuRI GGCC 5 cut(s) 807, 897, 1060, 1467, 1546
BtrI CACGTC 1 cut(s) 1186
BtsCI GGATG 3 cut(s) 299, 545, 1267
BtsIMutI CAGTG 3 cut(s) 169, 691, 1072
BtuMI TCGCGA 1 cut(s) 1227
Cac8I GCNNGC 3 cut(s) 246, 1465, 1527
CaiI CAGNNNCTG 1 cut(s) 1463
Cfr13I GGNCC 3 cut(s) 806, 896, 1466
Csp6I GTAC 6 cut(s) 187, 217, 345, 520, 969, 1627
CspCI CAANNNNNGTGG 2 cut(s) 850, 885
CviAII CATG 9 cut(s) 25, 337, 341, 367, 755, 762, 1108, 1346, 1483
CviQI GTAC 6 cut(s) 187, 217, 345, 520, 969, 1627
DdeI CTNAG 4 cut(s) 20, 585, 926, 1257
DpnI GATC 3 cut(s) 639, 1137, 1475
DpnII GATC 3 cut(s) 637, 1135, 1473
Eam1104I CTCTTC 2 cut(s) 736, 953
EarI CTCTTC 2 cut(s) 736, 953
EciI GGCGGA 1 cut(s) 1551
Ecl136II GAGCTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 480, 1541
Eco24I GRGCYC 1 cut(s) 407
Eco31I GGTCTC 1 cut(s) 1318
Eco53kI GAGCTC 1 cut(s) 405
EcoICRI GAGCTC 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 896
EcoRI GAATTC 3 cut(s) 541, 1041, 1414
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 480, 1541
EcoT22I ATGCAT 2 cut(s) 342, 794
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 2 cut(s) 480, 1541
FaeI CATG 9 cut(s) 28, 340, 344, 370, 758, 765, 1111, 1349, 1486
FaqI GGGAC 1 cut(s) 1502
FatI CATG 9 cut(s) 24, 336, 340, 366, 754, 761, 1107, 1345, 1482
Fnu4HI GCNGC 3 cut(s) 195, 477, 617
FokI GGATG 3 cut(s) 286, 532, 1274
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 3 cut(s) 195, 477, 617
FspBI CTAG 1 cut(s) 1238
GluI GCNGC 3 cut(s) 195, 477, 617
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 2 cut(s) 145, 1482
HaeIII GGCC 5 cut(s) 807, 897, 1060, 1467, 1546
HapII CCGG 3 cut(s) 229, 809, 1513
Hin1II CATG 9 cut(s) 28, 340, 344, 370, 758, 765, 1111, 1349, 1486
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 6 cut(s) 14, 1241, 1247, 1253, 1283, 1397
HpaII CCGG 3 cut(s) 229, 809, 1513
HphI GGTGA 2 cut(s) 63, 742
Hpy166II GTNNAC 5 cut(s) 217, 605, 704, 859, 1629
Hpy188I TCNGA 5 cut(s) 540, 1246, 1252, 1258, 1473
Hpy188III TCNNGA 9 cut(s) 229, 881, 1100, 1226, 1238, 1291, 1315, 1446, 1499
Hpy8I GTNNAC 5 cut(s) 217, 605, 704, 859, 1629
HpyAV CCTTC 5 cut(s) 78, 367, 559, 721, 814
HpyCH4III ACNGT 4 cut(s) 359, 695, 1067, 1626
HpyCH4IV ACGT 2 cut(s) 1185, 1194
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 263, 622, 1001
HpyF3I CTNAG 4 cut(s) 20, 585, 926, 1257
HpySE526I ACGT 2 cut(s) 1185, 1194
Hsp92II CATG 9 cut(s) 28, 340, 344, 370, 758, 765, 1111, 1349, 1486
Kpn2I TCCGGA 1 cut(s) 228
KpnI GGTACC 2 cut(s) 190, 348
Kzo9I GATC 3 cut(s) 637, 1135, 1473
LguI GCTCTTC 1 cut(s) 953
LmnI GCTCC 6 cut(s) 268, 402, 693, 1001, 1452, 1460
Lsp1109I GCAGC 3 cut(s) 181, 463, 628
LweI GCATC 2 cut(s) 801, 1330
MaeI CTAG 1 cut(s) 1238
MaeII ACGT 2 cut(s) 1185, 1194
MaeIII GTNAC 2 cut(s) 204, 283
MalI GATC 3 cut(s) 639, 1137, 1475
MboI GATC 3 cut(s) 637, 1135, 1473
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 1135
MhlI GDGCHC 2 cut(s) 407, 1457
MluCI AATT 9 cut(s) 38, 258, 506, 541, 633, 1041, 1380, 1414, 1508
MlyI GAGTC 1 cut(s) 1235
MmeI TCCRAC 2 cut(s) 550, 931
Mph1103I ATGCAT 2 cut(s) 342, 794
MroI TCCGGA 1 cut(s) 228
MroXI GAANNNNTTC 2 cut(s) 1095, 1414
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 147, 651
MspA1I CMGCKG 2 cut(s) 443, 1277
MspI CCGG 3 cut(s) 229, 809, 1513
MspR9I CCNGG 3 cut(s) 191, 809, 1514
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 979
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 1227
MwoI GCNNNNNNNGC 4 cut(s) 254, 263, 622, 1001
NciI CCSGG 2 cut(s) 809, 1514
NdeII GATC 3 cut(s) 637, 1135, 1473
NlaIII CATG 9 cut(s) 28, 340, 344, 370, 758, 765, 1111, 1349, 1486
NlaIV GGNNCC 5 cut(s) 188, 346, 689, 898, 1003
NruI TCGCGA 1 cut(s) 1227
NsiI ATGCAT 2 cut(s) 342, 794
NspI RCATGY 2 cut(s) 370, 765
PciI ACATGT 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 953
PcsI WCGNNNNNNNCGW 1 cut(s) 1191
PctI GAATGC 1 cut(s) 979
PdmI GAANNNNTTC 2 cut(s) 1095, 1414
PfeI GAWTC 5 cut(s) 14, 1247, 1253, 1283, 1397
PkrI GCNGC 3 cut(s) 196, 478, 618
PleI GAGTC 1 cut(s) 1235
PpsI GAGTC 1 cut(s) 1235
PscI ACATGT 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 5 cut(s) 188, 346, 689, 898, 1003
PspPI GGNCC 3 cut(s) 806, 896, 1466
PstNI CAGNNNCTG 1 cut(s) 1463
PsuI RGATCY 1 cut(s) 1135
PvuII CAGCTG 1 cut(s) 443
RruI TCGCGA 1 cut(s) 1227
RsaI GTAC 6 cut(s) 188, 218, 346, 521, 970, 1628
RsaNI GTAC 6 cut(s) 187, 217, 345, 520, 969, 1627
RseI CAYNNNNRTG 2 cut(s) 147, 651
SacI GAGCTC 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 953
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 3 cut(s) 195, 477, 617
Sau3AI GATC 3 cut(s) 637, 1135, 1473
Sau96I GGNCC 3 cut(s) 806, 896, 1466
SchI GAGTC 1 cut(s) 1235
ScrFI CCNGG 3 cut(s) 191, 809, 1514
SduI GDGCHC 2 cut(s) 407, 1457
SfaNI GCATC 2 cut(s) 801, 1330
SfcI CTRYAG 1 cut(s) 1520
SmiMI CAYNNNNRTG 2 cut(s) 147, 651
SmlI CTYRAG 3 cut(s) 497, 626, 1444
SmoI CTYRAG 3 cut(s) 497, 626, 1444
Sse9I AATT 9 cut(s) 38, 258, 506, 541, 633, 1041, 1380, 1414, 1508
SsiI CCGC 3 cut(s) 266, 1277, 1562
SspMI CTAG 1 cut(s) 1238
SstI GAGCTC 1 cut(s) 407
StyD4I CCNGG 3 cut(s) 189, 807, 1512
StyI CCWWGG 2 cut(s) 480, 1541
TaaI ACNGT 4 cut(s) 359, 695, 1067, 1626
TaiI ACGT 2 cut(s) 1188, 1197
TaqI TCGA 2 cut(s) 420, 1316
TaqII GACCGA 2 cut(s) 141, 759
TasI AATT 9 cut(s) 38, 258, 506, 541, 633, 1041, 1380, 1414, 1508
TatI WGTACW 3 cut(s) 216, 519, 1626
TfiI GAWTC 5 cut(s) 14, 1247, 1253, 1283, 1397
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 3 cut(s) 169, 698, 1072
TseI GCWGC 3 cut(s) 194, 476, 616
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 3 cut(s) 169, 698, 1072
XapI RAATTY 4 cut(s) 506, 541, 1041, 1414
XbaI TCTAGA 1 cut(s) 1237
XceI RCATGY 2 cut(s) 370, 765
XmnI GAANNNNTTC 2 cut(s) 1095, 1414
XspI CTAG 1 cut(s) 1238
Zsp2I ATGCAT 2 cut(s) 342, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.