Rorug03G0164000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011034
Physical Location & Seq
Reverse (-)
13663495 .. 13664040
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0164000.1

Sequence Viewer

Length: 546 bp
ATGGATGCTCTTAATTGGTTGAATTTGTGTGTTGGGAAGTTATCAAAAACAGACTTTGATCAACTGTTGCATTTTATTTGGGGAATTTGGAAAGAAAGGAATGATAGGGTATGGGAAAACAAAATCACTTTAGCTCATGATATAGCTCTCATGTCTTCTGTCAGACTGAGTAACTTTATTTTTCACAATACAAAATTACATGGTTCTCAAGGAACTAGGAAAATTTTGAAGTGGCAGTGCCCTCCTGTGGGTTGGTTGAAGGTGAATTTTGATGGAGCTTTTACTCCGAGCTCTGGCAAAGCAGAAATTGGTTTCTTAGTCCGTGACTCTCAAGGGACTTTTTTGGGAGCAGTGGGGAAGGTAGTTACTCGAGTTCAGTCTGTTGAACATGTCGAGCTCTTGGCTTGTAAGGAAGCATTTGGTTATGTGATGGAACATGGTCTATGTCCAGTAATTTTGGAGACTGATTGTTTGGTTTTGAAGCAACAAGTGTGTCAGGAGGAGCTGCAAAATTATTATATTCACTACAAGAAAAAACCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.74

Weight (kDa)

8.51

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 89 - 169 4.8e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58480
fragaria_vesca FvH4_6g21330 FvH4_6g21330 FvH4_6g21330
malus_domestica MD12G1050400.v1.1 MD14G1048900.v1.1
prunus_persica Prupe.7G086400_v2.0.a1
pyrus_communis pycom12g04490 pycom14g04000
rosa_chinensis RchiOBHm_Chr3g0477941
rosa_laevigata RLG00000023678
rosa_multiflora Rmu_sc0005991.1_g000009 Rmu_sc0028100.1_g000001
rosa_roxburghii Rroxscaffold_6G00403580
rosa_rugosa Rorug03G0164000
rosa_samantha Rh3AG214800 Rh3BG248400 Rh3CG242400 Rh3DG241800
rosa_wichuraiana Rw3G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 22, 84, 222, 265
AfiI CCNNNNNNNGG 3 cut(s) 247, 248, 293
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 5 cut(s) 22, 229, 259, 386, 481
AluBI AGCT 6 cut(s) 134, 146, 278, 291, 397, 505
AluI AGCT 6 cut(s) 134, 146, 278, 291, 397, 505
Alw21I GWGCWC 2 cut(s) 293, 399
Alw26I GTCTC 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 4 cut(s) 22, 84, 222, 265
ArsI GACNNNNNNTTYG 2 cut(s) 454, 486
AsuHPI GGTGA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 242
BanII GRGCYC 2 cut(s) 293, 399
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 2 cut(s) 293, 399
BbvI GCAGC 1 cut(s) 492
BccI CCATC 2 cut(s) 266, 424
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 192, 315
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 248, 293
Bse1I ACTGG 1 cut(s) 449
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 247, 248, 293
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 515
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 293, 399
BsiHKCI CYCGRG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 3 cut(s) 247, 248, 293
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 3 cut(s) 242, 293, 399
Bsp143I GATC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 449
BssMI GATC 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 167, 316
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 392
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 242, 357
BtsIMutI CAGTG 2 cut(s) 242, 357
CciI TCATGA 1 cut(s) 136
CviAII CATG 5 cut(s) 137, 151, 200, 389, 437
CviJI RGCY 7 cut(s) 134, 146, 278, 291, 397, 404, 505
CviKI_1 RGCY 7 cut(s) 134, 146, 278, 291, 397, 404, 505
DdeI CTNAG 2 cut(s) 167, 316
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Ecl136II GAGCTC 2 cut(s) 291, 397
Eco24I GRGCYC 2 cut(s) 293, 399
Eco53kI GAGCTC 2 cut(s) 291, 397
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 2 cut(s) 291, 397
EcoT38I GRGCYC 2 cut(s) 293, 399
FaeI CATG 5 cut(s) 140, 154, 203, 392, 440
FaqI GGGAC 1 cut(s) 349
FatI CATG 5 cut(s) 136, 150, 199, 388, 436
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 506
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 293, 399
Fsp4HI GCNGC 1 cut(s) 506
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 506
Hin1II CATG 5 cut(s) 140, 154, 203, 392, 440
HinfI GANTC 1 cut(s) 326
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 164, 288
Hpy188III TCNNGA 2 cut(s) 137, 497
HpyAV CCTTC 2 cut(s) 253, 352
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 70, 508
HpyF3I CTNAG 2 cut(s) 167, 316
Hsp92II CATG 5 cut(s) 140, 154, 203, 392, 440
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 3 cut(s) 275, 347, 502
LpnPI CCDG 4 cut(s) 258, 279, 462, 482
Lsp1109I GCAGC 1 cut(s) 492
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 170, 323, 364
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 3 cut(s) 242, 293, 399
MluCI AATT 9 cut(s) 13, 22, 84, 194, 222, 265, 306, 453, 511
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 2 cut(s) 252, 493
MseI TTAA 1 cut(s) 12
NdeII GATC 1 cut(s) 58
NlaIII CATG 5 cut(s) 140, 154, 203, 392, 440
NmuCI GTSAC 1 cut(s) 323
NspI RCATGY 1 cut(s) 392
PaeR7I CTCGAG 1 cut(s) 369
PagI TCATGA 1 cut(s) 136
PciI ACATGT 1 cut(s) 388
PkrI GCNGC 1 cut(s) 507
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PscI ACATGT 1 cut(s) 388
Psp124BI GAGCTC 2 cut(s) 293, 399
PspXI VCTCGAGB 1 cut(s) 369
SacI GAGCTC 2 cut(s) 293, 399
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 506
Sau3AI GATC 1 cut(s) 58
SchI GAGTC 1 cut(s) 320
SduI GDGCHC 3 cut(s) 242, 293, 399
SetI ASST 8 cut(s) 136, 148, 264, 280, 293, 363, 399, 507
Sfr274I CTCGAG 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 369
SmlI CTYRAG 3 cut(s) 207, 330, 369
SmoI CTYRAG 3 cut(s) 207, 330, 369
Sse9I AATT 9 cut(s) 13, 22, 84, 194, 222, 265, 306, 453, 511
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 2 cut(s) 293, 399
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 370, 393
TasI AATT 9 cut(s) 13, 22, 84, 194, 222, 265, 306, 453, 511
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 242, 357
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 323
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 242, 357
XapI RAATTY 4 cut(s) 22, 84, 222, 265
XceI RCATGY 1 cut(s) 392
XhoI CTCGAG 1 cut(s) 369
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.