Rw3G019360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011034
Physical Location & Seq
Forward (+)
21969571 .. 21972187
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019360.1

Sequence Viewer

Length: 1638 bp
ATGGTTTCAGAAAAGATGATATATGACGAATCGCTTAGCATGAAAGCGAAGGAATTAGACACCAAGTTGGTTTGTCAAACACCTTCACCAGAAGATATGGAAAACAATGTGTCTGCCAGAGCAACAAGTGATGGTAAAGACCGATTGGAGACATCACATCAAAATGGTAACTCCTCCAGTGGGAAAGGAACTACACATAGGTACCAGGCGGCATTAAAGTTACAGAAAGTGTACAAGAGTTTCCGGATAAGAAGACAGCTTGCAGATTGTGCAATTCTTGCGGAGCAGAGATGGTGGAAGGTGTTAGATTTTGCTGAACTCAAAAGGAGCTCTATATCATTTTTCGACATTGAGAAGCCTGAAACAGCTGTTTCTCGCTGGGCAAGAGCAAGAACCAGAGCTGCCAAGGTTGGAAAGGGTTTGTCTAAGGATAAAAAGGCTCGTAAACTTGCTTTGCAGCATTGGCTTGAGGCAATTGATCCCCGACATCGGTATGGACATAATCTTCACTTCTACTATGCCAAATGGCTCCACTGTGAGAGTAAACAGCCCTTCTTTTATTGGCTTGATATAGGGGAGGGAAGAGAAATCACGCATGAAGCATGTCCTCGGTCAAAGCTTCAAGCACAATGCATCAAGTATCTTGGCCCGGTAGAAAGGAAGGATTACGAAGTTGTAGTGGAGGGTGGGAAGTTTGTTTACAAGGAGAGTGGAGTGCTTCTTGATACAACAAAAGGCCCCAAAGAAACAAAGTGGATATTTGTCCTAAGTGTGTCCAAGAACTTATATGTTGGACAGAAGAGCAAGGGAAGATTGGTAGTTGAAAATGGAATTCTAAAGTCAGTTTGGCCTCACAGTGGGCATTATCTCCCAACAGAAGAAAACTTTCAGGAACTCATGTCATTCCTTATGGAAAACAATGTGGATCTCACTAATGTAAAGAAAACTGCAGTTGACGATGAAGAAGGAGGCGTTTTAAGCAAAAAGAGCAGTAACATAGGAGTCCGAAACAGCCCACGAAAAGCAGATTCATCTAAAGATACTATAACAACAAATGCTGAAGGCACAGTGGAAGAGAGTACTTCGAGAAATGAACAGTCTGATTGTGCAGAAAATCCTCCTCTTTTGTCAAGATTACCAGAACGATTCTGCTCAAAGATAGCTAAACTTGAAATACCAGAAAAAGAAGACGTGTTTGACGTTTTCAAGGAACAACCTCCAATAACTTGTCGAGAGTATTTTCTAGACTCTGATTCTGATTCTGAGGATGGTTATGAAACAGCTGAAGAATCAGTCTTGACAGAGGAAGATTTTATGGTCTCGAAACTGAACTTGTTTGATGAAGATGCACATGAAGAAGATGAAAAGCCAATATCAAAAGAAAGAATTATGCAAAGGATTGATTCACATAAAGGAATGAATTCATACCAGTTGGGTCAGCATTTGACCTCAAGATGGAGCACAGGAGCTGGCCCTCGGATCGGTTGCATGAGGGACTATCCTCCAGAGCTTCAATTCCGGGTTCTACAGCAAGCCTACTTGTCTCCAAGGCCAGTAGAAAGAAGTCCGCCGATACCTTTACATAAAGAAACAATGCACCCCCTATCTCAAAGACCACCAAAAGACAGTACACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

545

Amino Acids

62.35

Weight (kDa)

6.76

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58480
fragaria_vesca FvH4_6g21330 FvH4_6g21330 FvH4_6g21330
malus_domestica MD12G1050400.v1.1 MD14G1048900.v1.1
prunus_persica Prupe.7G086400_v2.0.a1
pyrus_communis pycom12g04490 pycom14g04000
rosa_chinensis RchiOBHm_Chr3g0477941
rosa_laevigata RLG00000023678
rosa_multiflora Rmu_sc0005991.1_g000009 Rmu_sc0028100.1_g000001
rosa_roxburghii Rroxscaffold_6G00403580
rosa_rugosa Rorug03G0164000
rosa_samantha Rh3AG214800 Rh3BG248400 Rh3CG242400 Rh3DG241800
rosa_wichuraiana Rw3G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 3 cut(s) 209, 281, 1568
AclWI GGATC 3 cut(s) 473, 933, 1487
AcsI RAATTY 2 cut(s) 831, 1420
AcuI CTGAAG 2 cut(s) 1080, 1305
AfaI GTAC 4 cut(s) 203, 233, 1081, 1630
AfiI CCNNNNNNNGG 5 cut(s) 180, 489, 857, 1455, 1481
AflIII ACRYGT 1 cut(s) 1191
AgsI TTSAA 5 cut(s) 623, 824, 1172, 1207, 1514
AjiI CACGTC 1 cut(s) 1192
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 9 cut(s) 259, 330, 368, 401, 619, 1163, 1283, 1469, 1510
AluI AGCT 9 cut(s) 259, 330, 368, 401, 619, 1163, 1283, 1469, 1510
Alw21I GWGCWC 2 cut(s) 332, 1463
Alw26I GTCTC 3 cut(s) 143, 1324, 1548
AlwI GGATC 3 cut(s) 473, 933, 1487
AlwNI CAGNNNCTG 1 cut(s) 1469
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 5 cut(s) 646, 736, 848, 1471, 1550
ApeKI GCWGC 2 cut(s) 401, 457
ApoI RAATTY 2 cut(s) 831, 1420
Asp700I GAANNNNTTC 2 cut(s) 885, 1420
Asp718I GGTACC 1 cut(s) 201
AspS9I GGNCC 3 cut(s) 647, 737, 1472
AsuC2I CCSGG 2 cut(s) 650, 1520
AsuHPI GGTGA 1 cut(s) 78
BaeI ACNNNNGTAYC 2 cut(s) 185, 218
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 683, 715
BbsI GAAGAC 2 cut(s) 259, 1194
Bbv12I GWGCWC 2 cut(s) 332, 1463
BbvI GCAGC 2 cut(s) 388, 469
BccI CCATC 4 cut(s) 125, 285, 1262, 1449
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 2 cut(s) 650, 1520
BcoDI GTCTC 3 cut(s) 143, 1324, 1548
BfaI CTAG 1 cut(s) 1244
BfmI CTRYAG 2 cut(s) 948, 1526
BisI GCNGC 3 cut(s) 210, 402, 458
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 3 cut(s) 211, 403, 459
BmcAI AGTACT 1 cut(s) 1081
Bme1390I CCNGG 3 cut(s) 206, 650, 1520
BmgBI CACGTC 1 cut(s) 1192
BmgT120I GGNCC 3 cut(s) 647, 737, 1472
BmiI GGNNCC 3 cut(s) 203, 530, 739
BmrFI CCNGG 3 cut(s) 206, 650, 1520
BmsI GCATC 2 cut(s) 642, 1336
BpiI GAAGAC 2 cut(s) 259, 1194
BpmI CTGGAG 2 cut(s) 160, 1488
Bpu1102I GCTNAGC 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 488, 1435
BpuMI CCSGG 2 cut(s) 650, 1520
BsaI GGTCTC 1 cut(s) 1324
BsaJI CCNNGG 4 cut(s) 405, 608, 1475, 1547
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 5 cut(s) 180, 489, 857, 1455, 1481
Bse1I ACTGG 3 cut(s) 177, 1429, 1553
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 4 cut(s) 405, 608, 1475, 1547
BseGI GGATG 1 cut(s) 1273
BseLI CCNNNNNNNGG 5 cut(s) 180, 489, 857, 1455, 1481
BseMII CTCAG 1 cut(s) 1254
BseNI ACTGG 3 cut(s) 177, 1429, 1553
BseRI GAGGAG 2 cut(s) 163, 1110
BseXI GCAGC 2 cut(s) 388, 469
BseYI CCCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 1128
BshFI GGCC 5 cut(s) 648, 738, 850, 1473, 1552
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 332, 1463
BsiSI CCGG 3 cut(s) 244, 650, 1519
BslFI GGGAC 1 cut(s) 1508
BslI CCNNNNNNNGG 5 cut(s) 180, 489, 857, 1455, 1481
BsmAI GTCTC 3 cut(s) 143, 1324, 1548
BsmFI GGGAC 1 cut(s) 1508
BsnI GGCC 5 cut(s) 648, 738, 850, 1473, 1552
Bso31I GGTCTC 1 cut(s) 1324
Bsp1286I GDGCHC 2 cut(s) 332, 1463
Bsp13I TCCGGA 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 3 cut(s) 478, 925, 1479
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 3 cut(s) 209, 281, 1568
BspANI GGCC 5 cut(s) 648, 738, 850, 1473, 1552
BspCNI CTCAG 1 cut(s) 1255
BspEI TCCGGA 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 203, 530, 739
BspMAI CTGCAG 1 cut(s) 952
BspPI GGATC 3 cut(s) 473, 933, 1487
BspQI GCTCTTC 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 1324
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 3 cut(s) 177, 1429, 1553
BssECI CCNNGG 4 cut(s) 405, 608, 1475, 1547
BssMI GATC 3 cut(s) 478, 925, 1479
BssT1I CCWWGG 2 cut(s) 405, 1547
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 5 cut(s) 536, 857, 1069, 1098, 1628
Bst6I CTCTTC 3 cut(s) 577, 794, 1068
BstAPI GCANNNNNTGC 2 cut(s) 269, 278
BstAUI TGTACA 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 261, 1471, 1533
BstDEI CTNAG 4 cut(s) 35, 426, 767, 1263
BstF5I GGATG 1 cut(s) 1273
BstKTI GATC 3 cut(s) 481, 928, 1482
BstMAI GTCTC 3 cut(s) 143, 1324, 1548
BstMBI GATC 3 cut(s) 478, 925, 1479
BstMWI GCNNNNNNNGC 5 cut(s) 269, 278, 463, 978, 987
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 204, 648, 1518
BstSFI CTRYAG 2 cut(s) 948, 1526
BstV1I GCAGC 2 cut(s) 388, 469
BstV2I GAAGAC 2 cut(s) 259, 1194
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
BsuRI GGCC 5 cut(s) 648, 738, 850, 1473, 1552
BtrI CACGTC 1 cut(s) 1192
BtsCI GGATG 1 cut(s) 1273
BtsIMutI CAGTG 4 cut(s) 184, 532, 862, 1074
Cac8I GCNNGC 3 cut(s) 261, 1471, 1533
CaiI CAGNNNCTG 1 cut(s) 1469
Cfr13I GGNCC 3 cut(s) 647, 737, 1472
Csp6I GTAC 4 cut(s) 202, 232, 1080, 1629
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 6 cut(s) 40, 596, 603, 898, 1352, 1489
CviQI GTAC 4 cut(s) 202, 232, 1080, 1629
DdeI CTNAG 4 cut(s) 35, 426, 767, 1263
DpnI GATC 3 cut(s) 480, 927, 1481
DpnII GATC 3 cut(s) 478, 925, 1479
Eam1104I CTCTTC 3 cut(s) 577, 794, 1068
EarI CTCTTC 3 cut(s) 577, 794, 1068
EciI GGCGGA 1 cut(s) 1557
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 405, 1547
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 1324
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 1080, 1305
EcoICRI GAGCTC 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 737
EcoRI GAATTC 2 cut(s) 831, 1420
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 405, 1547
EcoT22I ATGCAT 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 2 cut(s) 405, 1547
FaeI CATG 6 cut(s) 43, 599, 606, 901, 1355, 1492
FaqI GGGAC 1 cut(s) 1508
FatI CATG 6 cut(s) 39, 595, 602, 897, 1351, 1488
Fnu4HI GCNGC 3 cut(s) 210, 402, 458
FokI GGATG 1 cut(s) 1280
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 210, 402, 458
FspBI CTAG 1 cut(s) 1244
GluI GCNGC 3 cut(s) 210, 402, 458
GsaI CCCAGC 1 cut(s) 382
GsuI CTGGAG 2 cut(s) 160, 1488
HaeIII GGCC 5 cut(s) 648, 738, 850, 1473, 1552
HapII CCGG 3 cut(s) 244, 650, 1519
Hin1II CATG 6 cut(s) 43, 599, 606, 901, 1355, 1492
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 9 cut(s) 29, 1002, 1028, 1146, 1247, 1253, 1259, 1289, 1403
HpaII CCGG 3 cut(s) 244, 650, 1519
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 6 cut(s) 232, 446, 545, 700, 955, 1631
Hpy188I TCNGA 7 cut(s) 10, 1007, 1102, 1252, 1258, 1264, 1479
Hpy8I GTNNAC 6 cut(s) 232, 446, 545, 700, 955, 1631
HpyAV CCTTC 7 cut(s) 43, 93, 292, 562, 655, 959, 1055
HpyCH4III ACNGT 5 cut(s) 536, 857, 1069, 1098, 1628
HpyCH4IV ACGT 2 cut(s) 1191, 1200
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 278, 463, 978, 987
HpyF3I CTNAG 4 cut(s) 35, 426, 767, 1263
HpySE526I ACGT 2 cut(s) 1191, 1200
Hsp92II CATG 6 cut(s) 43, 599, 606, 901, 1355, 1492
Kpn2I TCCGGA 1 cut(s) 243
KpnI GGTACC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 478, 925, 1479
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 5 cut(s) 283, 327, 534, 1458, 1466
Lsp1109I GCAGC 2 cut(s) 388, 469
LweI GCATC 2 cut(s) 642, 1336
MaeI CTAG 1 cut(s) 1244
MaeII ACGT 2 cut(s) 1191, 1200
MaeIII GTNAC 3 cut(s) 167, 219, 992
MalI GATC 3 cut(s) 480, 927, 1481
MboI GATC 3 cut(s) 478, 925, 1479
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 2 cut(s) 332, 1463
MluCI AATT 7 cut(s) 53, 273, 474, 831, 1386, 1420, 1514
MlyI GAGTC 2 cut(s) 1011, 1241
MmeI TCCRAC 2 cut(s) 391, 772
Mph1103I ATGCAT 1 cut(s) 635
MroI TCCGGA 1 cut(s) 243
MroXI GAANNNNTTC 2 cut(s) 885, 1420
MseI TTAA 2 cut(s) 215, 977
MslI CAYNNNNRTG 2 cut(s) 162, 492
MspA1I CMGCKG 2 cut(s) 368, 1283
MspI CCGG 3 cut(s) 244, 650, 1519
MspR9I CCNGG 3 cut(s) 206, 650, 1520
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 5 cut(s) 269, 278, 463, 978, 987
NciI CCSGG 2 cut(s) 650, 1520
NdeII GATC 3 cut(s) 478, 925, 1479
NlaIII CATG 6 cut(s) 43, 599, 606, 901, 1355, 1492
NlaIV GGNNCC 3 cut(s) 203, 530, 739
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 794
PcsI WCGNNNNNNNCGW 1 cut(s) 1197
PdmI GAANNNNTTC 2 cut(s) 885, 1420
PfeI GAWTC 7 cut(s) 29, 1028, 1146, 1253, 1259, 1289, 1403
PkrI GCNGC 3 cut(s) 211, 403, 459
PleI GAGTC 2 cut(s) 1010, 1241
PpsI GAGTC 2 cut(s) 1010, 1241
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 203, 530, 739
PspPI GGNCC 3 cut(s) 647, 737, 1472
PstI CTGCAG 1 cut(s) 952
PstNI CAGNNNCTG 1 cut(s) 1469
PsuI RGATCY 1 cut(s) 925
PvuII CAGCTG 2 cut(s) 368, 1283
RsaI GTAC 4 cut(s) 203, 233, 1081, 1630
RsaNI GTAC 4 cut(s) 202, 232, 1080, 1629
RseI CAYNNNNRTG 2 cut(s) 162, 492
SacI GAGCTC 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 2 cut(s) 215, 977
SatI GCNGC 3 cut(s) 210, 402, 458
Sau3AI GATC 3 cut(s) 478, 925, 1479
Sau96I GGNCC 3 cut(s) 647, 737, 1472
ScaI AGTACT 1 cut(s) 1081
SchI GAGTC 2 cut(s) 1011, 1241
ScrFI CCNGG 3 cut(s) 206, 650, 1520
SduI GDGCHC 2 cut(s) 332, 1463
SfaNI GCATC 2 cut(s) 642, 1336
SfcI CTRYAG 2 cut(s) 948, 1526
SmiMI CAYNNNNRTG 2 cut(s) 162, 492
SmlI CTYRAG 2 cut(s) 467, 1450
SmoI CTYRAG 2 cut(s) 467, 1450
Sse9I AATT 7 cut(s) 53, 273, 474, 831, 1386, 1420, 1514
SsiI CCGC 3 cut(s) 209, 281, 1568
SspMI CTAG 1 cut(s) 1244
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 3 cut(s) 204, 648, 1518
StyI CCWWGG 2 cut(s) 405, 1547
TaaI ACNGT 5 cut(s) 536, 857, 1069, 1098, 1628
TaiI ACGT 2 cut(s) 1194, 1203
TaqI TCGA 4 cut(s) 345, 1085, 1231, 1322
TaqII GACCGA 2 cut(s) 156, 600
TasI AATT 7 cut(s) 53, 273, 474, 831, 1386, 1420, 1514
TatI WGTACW 3 cut(s) 231, 1079, 1628
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 7 cut(s) 29, 1028, 1146, 1253, 1259, 1289, 1403
Tru1I TTAA 2 cut(s) 215, 977
Tru9I TTAA 2 cut(s) 215, 977
TscAI CASTG 4 cut(s) 184, 539, 862, 1074
TseI GCWGC 2 cut(s) 401, 457
TspRI CASTG 4 cut(s) 184, 539, 862, 1074
XapI RAATTY 2 cut(s) 831, 1420
XbaI TCTAGA 1 cut(s) 1243
XceI RCATGY 1 cut(s) 606
XmnI GAANNNNTTC 2 cut(s) 885, 1420
XspI CTAG 1 cut(s) 1244
ZrmI AGTACT 1 cut(s) 1081
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.