Rh3CG242400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0011034
Physical Location & Seq
Forward (+)
23187794 .. 23190411
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG242400.1

Sequence Viewer

Length: 1689 bp
ATGGTTTCAGAAAAGATGATATATGACGAATCGCTTAGCATGAAAGCGAAGGAATTAGACACCAAGTTGGTTTGTCAAACACCTTCACCAGAAGATATGGAAAACAATGTGTCTGCCAGAGCAACAAGTGATGGTAAAGACCGATTGGAGACATCACATCAAAATGGTAACTCCTCCAGTGGGAAAGGAACTACACATAGGTACCAGGCGGCATTAAAGTTACAGAAAGTGTACAAGAGTTTCCGGATAAGAAGACAGCTTGCAGATTGTGCAATTCTTGCGGAGCAGAGATGGTGGAAGGTGTTAGATTTTGCTGAACTCAAAAGGAGCTCTATATCATTTTTCGACATTGAGAAGCCTGAAACAGCTGTTTCTCGCTGGGCAAGAGCAAGAACCAGAGCTGCCAAGGTTGGAAAGGGTTTGTCTAAGGATAAAAAGGCTCGTAAACTTGCTTTGCAGCATTGGCTTGAGGCAATTGATCCCCGACATCGGTATGGACATAATCTTCACTTCTACTATGCCAAATGGCTCCACTGTGAGAGTAAACAGCCCTTCTTTTATTGGCTTGATATAGGGGAGGGAAGAGAAATCACGCATGAAGCATGTCCTCGGTCAAAGCTTCAAGCACAATGCATCAAGTATCTTGGCCCGGTAGAAAGGAAGGATTACGAAGTTGTAGTGGAGGGTGGGAAGTTTGTTTACAAGGAGAGTGGAGTGCTTCTTGATACAACAAAAGGCCCCAAAGAAACAAAGTGGATATTTGTCCTAAGTGTGTCCAAGAACTTATATGTTGGACAGAAGAGCAAGGGTACTTTTCAGCATTCAAGTTTCTTGGCAGGAGGAGCCACACTGTCTGCTGGAAGATTGGTAGTTGAAAATGGAATTCTAAAGTCAGTTTGGCCTCACAGTGGGCATTATCTCCCAACAGAAGAAAACTTTCAGGAACTCATGTCATTCCTTATGGAAAACAATGTGGATCTCACTAATGTAAAGAAAACTGCAGTTGACGATGAAGAAGGAGGCGTTTTAAGCAAAAAGAGCAGTAACATAGGAGTCCGAAACAGCCCACGAAAAGCAGATTCATCTAAAGATACTATAACAACAAATGCTGAAGGCACAGTGGAAGAGAGTACTTCGAGAAATGAACAGTCTGATTGTGCAGAAAATCCTCCTCTTTTGTCAAGATTACCAGAACGATTCTGCTCAAAGATAGCTAAACTTGAAATACCAGAAAAAGAAGACGTGTTTGACGTTTTCAAGGAACAACCTCCAATAACTTGTCGAGAGTATTTTCTAGACTCTGATTCTGATTCTGAGGATGGTTATGAAACAGCTGAAGAATCAGTCTTGACAGAGGAAGATTTTATGGTCTCGAAACTGAACTTGTTTGATGAAGATGCACATGAAGAAGATGAAAAGCCAATATCAAAAGAAAGAATTATGCAAAGGATTGATTCACATAAAGGAATGAATTCATACCAGTTGGGTCAGCATTTGACCTCAAGATGGAGCACAGGAGCTGGCCCTCGGATCGGTTGCATGAGGGACTATCCTCCAGAGCTTCAATTCCGGGTTCTACAGCAAGCCTACTTGTCTCCAAGGCCAGTAGAAAGAAGTCCGCCGATACCTTTACATAAAGAAACAATGCACCCCCTATCTCAAAGACCACCAAAAGACAGTACACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

562

Amino Acids

63.98

Weight (kDa)

6.78

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58480
fragaria_vesca FvH4_6g21330 FvH4_6g21330 FvH4_6g21330
malus_domestica MD12G1050400.v1.1 MD14G1048900.v1.1
prunus_persica Prupe.7G086400_v2.0.a1
pyrus_communis pycom12g04490 pycom14g04000
rosa_chinensis RchiOBHm_Chr3g0477941
rosa_laevigata RLG00000023678
rosa_multiflora Rmu_sc0005991.1_g000009 Rmu_sc0028100.1_g000001
rosa_roxburghii Rroxscaffold_6G00403580
rosa_rugosa Rorug03G0164000
rosa_samantha Rh3AG214800 Rh3BG248400 Rh3CG242400 Rh3DG241800
rosa_wichuraiana Rw3G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 3 cut(s) 209, 281, 1619
AclWI GGATC 3 cut(s) 473, 984, 1538
AcsI RAATTY 2 cut(s) 882, 1471
AcuI CTGAAG 2 cut(s) 1131, 1356
AfaI GTAC 5 cut(s) 203, 233, 811, 1132, 1681
AfiI CCNNNNNNNGG 5 cut(s) 180, 489, 908, 1506, 1532
AflIII ACRYGT 1 cut(s) 1242
AgsI TTSAA 6 cut(s) 623, 825, 875, 1223, 1258, 1565
AjiI CACGTC 1 cut(s) 1243
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 9 cut(s) 259, 330, 368, 401, 619, 1214, 1334, 1520, 1561
AluI AGCT 9 cut(s) 259, 330, 368, 401, 619, 1214, 1334, 1520, 1561
Alw21I GWGCWC 2 cut(s) 332, 1514
Alw26I GTCTC 3 cut(s) 143, 1375, 1599
AlwI GGATC 3 cut(s) 473, 984, 1538
AlwNI CAGNNNCTG 1 cut(s) 1520
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 5 cut(s) 646, 736, 899, 1522, 1601
ApeKI GCWGC 2 cut(s) 401, 457
ApoI RAATTY 2 cut(s) 882, 1471
Asp700I GAANNNNTTC 2 cut(s) 936, 1471
Asp718I GGTACC 1 cut(s) 201
AspS9I GGNCC 3 cut(s) 647, 737, 1523
AsuC2I CCSGG 2 cut(s) 650, 1571
AsuHPI GGTGA 1 cut(s) 78
BaeI ACNNNNGTAYC 2 cut(s) 185, 218
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 683, 715
BbsI GAAGAC 2 cut(s) 259, 1245
Bbv12I GWGCWC 2 cut(s) 332, 1514
BbvI GCAGC 2 cut(s) 388, 469
BccI CCATC 4 cut(s) 125, 285, 1313, 1500
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 2 cut(s) 650, 1571
BcoDI GTCTC 3 cut(s) 143, 1375, 1599
BfaI CTAG 1 cut(s) 1295
BfmI CTRYAG 2 cut(s) 999, 1577
BisI GCNGC 3 cut(s) 210, 402, 458
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 3 cut(s) 211, 403, 459
BmcAI AGTACT 1 cut(s) 1132
Bme1390I CCNGG 3 cut(s) 206, 650, 1571
BmgBI CACGTC 1 cut(s) 1243
BmgT120I GGNCC 3 cut(s) 647, 737, 1523
BmiI GGNNCC 4 cut(s) 203, 530, 739, 844
BmrFI CCNGG 3 cut(s) 206, 650, 1571
BmsI GCATC 2 cut(s) 642, 1387
BpiI GAAGAC 2 cut(s) 259, 1245
BpmI CTGGAG 2 cut(s) 160, 1539
Bpu1102I GCTNAGC 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 488, 1486
BpuMI CCSGG 2 cut(s) 650, 1571
BsaI GGTCTC 1 cut(s) 1375
BsaJI CCNNGG 4 cut(s) 405, 608, 1526, 1598
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 5 cut(s) 180, 489, 908, 1506, 1532
Bse1I ACTGG 3 cut(s) 177, 1480, 1604
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 4 cut(s) 405, 608, 1526, 1598
BseGI GGATG 1 cut(s) 1324
BseLI CCNNNNNNNGG 5 cut(s) 180, 489, 908, 1506, 1532
BseMII CTCAG 1 cut(s) 1305
BseNI ACTGG 3 cut(s) 177, 1480, 1604
BseRI GAGGAG 3 cut(s) 163, 855, 1161
BseXI GCAGC 2 cut(s) 388, 469
BseYI CCCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 1179
BshFI GGCC 5 cut(s) 648, 738, 901, 1524, 1603
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 332, 1514
BsiSI CCGG 3 cut(s) 244, 650, 1570
BslFI GGGAC 1 cut(s) 1559
BslI CCNNNNNNNGG 5 cut(s) 180, 489, 908, 1506, 1532
BsmAI GTCTC 3 cut(s) 143, 1375, 1599
BsmFI GGGAC 1 cut(s) 1559
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 5 cut(s) 648, 738, 901, 1524, 1603
Bso31I GGTCTC 1 cut(s) 1375
Bsp1286I GDGCHC 2 cut(s) 332, 1514
Bsp13I TCCGGA 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 3 cut(s) 478, 976, 1530
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 3 cut(s) 209, 281, 1619
BspANI GGCC 5 cut(s) 648, 738, 901, 1524, 1603
BspCNI CTCAG 1 cut(s) 1306
BspEI TCCGGA 1 cut(s) 243
BspLI GGNNCC 4 cut(s) 203, 530, 739, 844
BspMAI CTGCAG 1 cut(s) 1003
BspPI GGATC 3 cut(s) 473, 984, 1538
BspQI GCTCTTC 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 1375
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 3 cut(s) 177, 1480, 1604
BssECI CCNNGG 4 cut(s) 405, 608, 1526, 1598
BssMI GATC 3 cut(s) 478, 976, 1530
BssT1I CCWWGG 2 cut(s) 405, 1598
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 6 cut(s) 536, 852, 908, 1120, 1149, 1679
Bst6I CTCTTC 3 cut(s) 577, 794, 1119
BstAPI GCANNNNNTGC 2 cut(s) 269, 278
BstAUI TGTACA 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 261, 1522, 1584
BstDEI CTNAG 4 cut(s) 35, 426, 767, 1314
BstF5I GGATG 1 cut(s) 1324
BstKTI GATC 3 cut(s) 481, 979, 1533
BstMAI GTCTC 3 cut(s) 143, 1375, 1599
BstMBI GATC 3 cut(s) 478, 976, 1530
BstMWI GCNNNNNNNGC 6 cut(s) 269, 278, 463, 842, 1029, 1038
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 204, 648, 1569
BstSFI CTRYAG 2 cut(s) 999, 1577
BstV1I GCAGC 2 cut(s) 388, 469
BstV2I GAAGAC 2 cut(s) 259, 1245
BstX2I RGATCY 1 cut(s) 976
BstYI RGATCY 1 cut(s) 976
BsuRI GGCC 5 cut(s) 648, 738, 901, 1524, 1603
BtrI CACGTC 1 cut(s) 1243
BtsCI GGATG 1 cut(s) 1324
BtsIMutI CAGTG 5 cut(s) 184, 532, 848, 913, 1125
Cac8I GCNNGC 3 cut(s) 261, 1522, 1584
CaiI CAGNNNCTG 1 cut(s) 1520
Cfr13I GGNCC 3 cut(s) 647, 737, 1523
Csp6I GTAC 5 cut(s) 202, 232, 810, 1131, 1680
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 6 cut(s) 40, 596, 603, 949, 1403, 1540
CviQI GTAC 5 cut(s) 202, 232, 810, 1131, 1680
DdeI CTNAG 4 cut(s) 35, 426, 767, 1314
DpnI GATC 3 cut(s) 480, 978, 1532
DpnII GATC 3 cut(s) 478, 976, 1530
Eam1104I CTCTTC 3 cut(s) 577, 794, 1119
EarI CTCTTC 3 cut(s) 577, 794, 1119
EciI GGCGGA 1 cut(s) 1608
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 405, 1598
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 1375
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 1131, 1356
EcoICRI GAGCTC 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 737
EcoRI GAATTC 2 cut(s) 882, 1471
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 405, 1598
EcoT22I ATGCAT 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 2 cut(s) 405, 1598
FaeI CATG 6 cut(s) 43, 599, 606, 952, 1406, 1543
FaqI GGGAC 1 cut(s) 1559
FatI CATG 6 cut(s) 39, 595, 602, 948, 1402, 1539
Fnu4HI GCNGC 3 cut(s) 210, 402, 458
FokI GGATG 1 cut(s) 1331
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 210, 402, 458
FspBI CTAG 1 cut(s) 1295
GluI GCNGC 3 cut(s) 210, 402, 458
GsaI CCCAGC 1 cut(s) 382
GsuI CTGGAG 2 cut(s) 160, 1539
HaeIII GGCC 5 cut(s) 648, 738, 901, 1524, 1603
HapII CCGG 3 cut(s) 244, 650, 1570
Hin1II CATG 6 cut(s) 43, 599, 606, 952, 1406, 1543
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 9 cut(s) 29, 1053, 1079, 1197, 1298, 1304, 1310, 1340, 1454
HpaII CCGG 3 cut(s) 244, 650, 1570
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 6 cut(s) 232, 446, 545, 700, 1006, 1682
Hpy188I TCNGA 7 cut(s) 10, 1058, 1153, 1303, 1309, 1315, 1530
Hpy8I GTNNAC 6 cut(s) 232, 446, 545, 700, 1006, 1682
HpyAV CCTTC 7 cut(s) 43, 93, 292, 562, 655, 1010, 1106
HpyCH4III ACNGT 6 cut(s) 536, 852, 908, 1120, 1149, 1679
HpyCH4IV ACGT 2 cut(s) 1242, 1251
HpyF10VI GCNNNNNNNGC 6 cut(s) 269, 278, 463, 842, 1029, 1038
HpyF3I CTNAG 4 cut(s) 35, 426, 767, 1314
HpySE526I ACGT 2 cut(s) 1242, 1251
Hsp92II CATG 6 cut(s) 43, 599, 606, 952, 1406, 1543
Kpn2I TCCGGA 1 cut(s) 243
KpnI GGTACC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 478, 976, 1530
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 6 cut(s) 283, 327, 534, 842, 1509, 1517
Lsp1109I GCAGC 2 cut(s) 388, 469
LweI GCATC 2 cut(s) 642, 1387
MaeI CTAG 1 cut(s) 1295
MaeII ACGT 2 cut(s) 1242, 1251
MaeIII GTNAC 3 cut(s) 167, 219, 1043
MalI GATC 3 cut(s) 480, 978, 1532
MboI GATC 3 cut(s) 478, 976, 1530
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 976
MhlI GDGCHC 2 cut(s) 332, 1514
MluCI AATT 7 cut(s) 53, 273, 474, 882, 1437, 1471, 1565
MlyI GAGTC 2 cut(s) 1062, 1292
MmeI TCCRAC 2 cut(s) 391, 772
Mph1103I ATGCAT 1 cut(s) 635
MroI TCCGGA 1 cut(s) 243
MroXI GAANNNNTTC 2 cut(s) 936, 1471
MseI TTAA 2 cut(s) 215, 1028
MslI CAYNNNNRTG 2 cut(s) 162, 492
MspA1I CMGCKG 2 cut(s) 368, 1334
MspI CCGG 3 cut(s) 244, 650, 1570
MspR9I CCNGG 3 cut(s) 206, 650, 1571
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 6 cut(s) 269, 278, 463, 842, 1029, 1038
NciI CCSGG 2 cut(s) 650, 1571
NdeII GATC 3 cut(s) 478, 976, 1530
NlaIII CATG 6 cut(s) 43, 599, 606, 952, 1406, 1543
NlaIV GGNNCC 4 cut(s) 203, 530, 739, 844
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 794
PcsI WCGNNNNNNNCGW 1 cut(s) 1248
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 2 cut(s) 936, 1471
PfeI GAWTC 7 cut(s) 29, 1079, 1197, 1304, 1310, 1340, 1454
PkrI GCNGC 3 cut(s) 211, 403, 459
PleI GAGTC 2 cut(s) 1061, 1292
PpsI GAGTC 2 cut(s) 1061, 1292
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 4 cut(s) 203, 530, 739, 844
PspPI GGNCC 3 cut(s) 647, 737, 1523
PstI CTGCAG 1 cut(s) 1003
PstNI CAGNNNCTG 1 cut(s) 1520
PsuI RGATCY 1 cut(s) 976
PvuII CAGCTG 2 cut(s) 368, 1334
RsaI GTAC 5 cut(s) 203, 233, 811, 1132, 1681
RsaNI GTAC 5 cut(s) 202, 232, 810, 1131, 1680
RseI CAYNNNNRTG 2 cut(s) 162, 492
SacI GAGCTC 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 2 cut(s) 215, 1028
SatI GCNGC 3 cut(s) 210, 402, 458
Sau3AI GATC 3 cut(s) 478, 976, 1530
Sau96I GGNCC 3 cut(s) 647, 737, 1523
ScaI AGTACT 1 cut(s) 1132
SchI GAGTC 2 cut(s) 1062, 1292
ScrFI CCNGG 3 cut(s) 206, 650, 1571
SduI GDGCHC 2 cut(s) 332, 1514
SfaNI GCATC 2 cut(s) 642, 1387
SfcI CTRYAG 2 cut(s) 999, 1577
SmiMI CAYNNNNRTG 2 cut(s) 162, 492
SmlI CTYRAG 2 cut(s) 467, 1501
SmoI CTYRAG 2 cut(s) 467, 1501
Sse9I AATT 7 cut(s) 53, 273, 474, 882, 1437, 1471, 1565
SsiI CCGC 3 cut(s) 209, 281, 1619
SspMI CTAG 1 cut(s) 1295
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 3 cut(s) 204, 648, 1569
StyI CCWWGG 2 cut(s) 405, 1598
TaaI ACNGT 6 cut(s) 536, 852, 908, 1120, 1149, 1679
TaiI ACGT 2 cut(s) 1245, 1254
TaqI TCGA 4 cut(s) 345, 1136, 1282, 1373
TaqII GACCGA 2 cut(s) 156, 600
TasI AATT 7 cut(s) 53, 273, 474, 882, 1437, 1471, 1565
TatI WGTACW 3 cut(s) 231, 1130, 1679
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 7 cut(s) 29, 1079, 1197, 1304, 1310, 1340, 1454
Tru1I TTAA 2 cut(s) 215, 1028
Tru9I TTAA 2 cut(s) 215, 1028
TscAI CASTG 5 cut(s) 184, 539, 855, 913, 1125
TseI GCWGC 2 cut(s) 401, 457
TspRI CASTG 5 cut(s) 184, 539, 855, 913, 1125
XapI RAATTY 2 cut(s) 882, 1471
XbaI TCTAGA 1 cut(s) 1294
XceI RCATGY 1 cut(s) 606
XmnI GAANNNNTTC 2 cut(s) 936, 1471
XspI CTAG 1 cut(s) 1295
ZrmI AGTACT 1 cut(s) 1132
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.