Rh3DG241800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011034
Physical Location & Seq
Forward (+)
23221186 .. 23226442
5257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG241800.1

Sequence Viewer

Length: 1320 bp
ATGATGGTTCTGAATTCATCCGTTGCACATCTTTTGAAGGTTGGAAAGGGTTTGTCTAAGGATAAAAAGGCTCGTAAACTTGCTTTGCAGCATTGGCTTGAGGCAATTGATCCCCGACATCGGTATGGACATAATCTTCACTTCTACTATGCCAAATGGCTCCACTGTGAGAGTAAACAGCCCTTCTTTTATTGGCTTGATATAGGGGAGGGAAGAGAAATCACGCATGAAGCATGTCCTCGGTCAAAGCTTCAAGCACAATGCATCAAGTATCTTGGCCCGGTAGAAAGGAAGGATTACGAAGTTGTAGTGGAGGGTGGGAAGTTTGTTTACAAGGAGAGTGGAGTGCTTCTTGATACAACAAAAGGCCCCAAAGAAACAAAGTGGATATTTGTCCTAAGTGTGTCCAAGAACTTATATGTTGGACAGAAGAGCAAGGGTACTTTTCAGCATTCAAGTTTCTTGGCAGGAGGAGCCACATTGTCTGCTGGAAGATTGGTAGTTGAAAATGGAATTCTAAAGTCAGTTTGGCCTCACAGTGGGCATTATCTCCCAACAGAAGAAAACTTTCAGGAACTCATGTCATTCCTTATGGAAAACAATGTGGATCTCACTAATGTAAAGAAAACTGCAGTTGACGATGAAGAAGGAGGCGTTTTAAGCAAAAAGAGCAGTAACATAGGAGTCCGAAACAGCCCACGAAAAACAGATTCATCTAAAGATACTATAACAACAAATGCAGAAGGCACAGTGGAAGAGAGTACTTCGAGAAATGAACAGTCTGATTGTGTAGAAAATCCTCCTCTTTTGTCAAGATTACCAGAACGATTCTGCTCAAAGATAGCTAAACTTGAAATACCAGAAAAAGAAGACGTGTTTGACGTTTTCAAGGAACAACCTCCAATAACTTGTCGCGAGTATTTTCTAGACTCTGATTCTGATTCTGAGGATGGTTATGAAACAGCTGAAGAATCAGTCTTGACAGAGGAAGATTTTATGGTCTCGAAACTGAACTTGTTTGATGAAGATGCACATGAAGAAGATGAAAAGCCAATATCAAAAGAAAGAATTATGCAAAGGATTGATTCACATAAAGGAATGAATTCATACCAGTTGGGTCAGCATTTGACCTCAAGATGGAGCACAGGAGCTGGCCCTCGGATCGGTTGCATGAGGGACTATCCTCCAGAGCTTCAATTCCGGGTTCTACAGCAAGCCTACTTGTCTCCAAGGCCAGTAGAAAGAAGTCCGCCGATACCTTTACATAAAGAAACAATGCACCCCCTATCTCAAAGACCACCAAAAGACAGTACACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

49.92

Weight (kDa)

6.05

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58480
fragaria_vesca FvH4_6g21330 FvH4_6g21330 FvH4_6g21330
malus_domestica MD12G1050400.v1.1 MD14G1048900.v1.1
prunus_persica Prupe.7G086400_v2.0.a1
pyrus_communis pycom12g04490 pycom14g04000
rosa_chinensis RchiOBHm_Chr3g0477941
rosa_laevigata RLG00000023678
rosa_multiflora Rmu_sc0005991.1_g000009 Rmu_sc0028100.1_g000001
rosa_roxburghii Rroxscaffold_6G00403580
rosa_rugosa Rorug03G0164000
rosa_samantha Rh3AG214800 Rh3BG248400 Rh3CG242400 Rh3DG241800
rosa_wichuraiana Rw3G019360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 915
AciI CCGC 1 cut(s) 1250
AclWI GGATC 3 cut(s) 104, 615, 1169
AcsI RAATTY 3 cut(s) 13, 513, 1102
AcuI CTGAAG 1 cut(s) 987
AfaI GTAC 3 cut(s) 442, 763, 1312
AfiI CCNNNNNNNGG 4 cut(s) 120, 539, 1137, 1163
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 7 cut(s) 37, 254, 456, 506, 854, 889, 1196
AjiI CACGTC 1 cut(s) 874
AluBI AGCT 5 cut(s) 250, 845, 965, 1151, 1192
AluI AGCT 5 cut(s) 250, 845, 965, 1151, 1192
Alw21I GWGCWC 1 cut(s) 1145
Alw26I GTCTC 2 cut(s) 1006, 1230
AlwI GGATC 3 cut(s) 104, 615, 1169
AlwNI CAGNNNCTG 1 cut(s) 1151
AoxI GGCC 5 cut(s) 277, 367, 530, 1153, 1232
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 3 cut(s) 13, 513, 1102
Asp700I GAANNNNTTC 2 cut(s) 567, 1102
AspS9I GGNCC 3 cut(s) 278, 368, 1154
AsuC2I CCSGG 2 cut(s) 281, 1202
BarI GAAGNNNNNNTAC 2 cut(s) 314, 346
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 1 cut(s) 1145
BbvI GCAGC 1 cut(s) 100
BccI CCATC 2 cut(s) 944, 1131
BcnI CCSGG 2 cut(s) 281, 1202
BcoDI GTCTC 2 cut(s) 1006, 1230
BfaI CTAG 1 cut(s) 926
BfmI CTRYAG 2 cut(s) 630, 1208
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmcAI AGTACT 1 cut(s) 763
Bme1390I CCNGG 2 cut(s) 281, 1202
BmgBI CACGTC 1 cut(s) 874
BmgT120I GGNCC 3 cut(s) 278, 368, 1154
BmiI GGNNCC 3 cut(s) 161, 370, 475
BmrFI CCNGG 2 cut(s) 281, 1202
BmsI GCATC 2 cut(s) 273, 1018
BpiI GAAGAC 1 cut(s) 876
BpmI CTGGAG 1 cut(s) 1170
BpuEI CTTGAG 2 cut(s) 119, 1117
BpuMI CCSGG 2 cut(s) 281, 1202
BsaI GGTCTC 1 cut(s) 1006
BsaJI CCNNGG 3 cut(s) 239, 1157, 1229
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 539, 1137, 1163
Bse1I ACTGG 2 cut(s) 1111, 1235
BseDI CCNNGG 3 cut(s) 239, 1157, 1229
BseGI GGATG 2 cut(s) 17, 955
BseLI CCNNNNNNNGG 4 cut(s) 120, 539, 1137, 1163
BseMII CTCAG 1 cut(s) 936
BseNI ACTGG 2 cut(s) 1111, 1235
BseRI GAGGAG 2 cut(s) 486, 792
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 915
BshFI GGCC 5 cut(s) 279, 369, 532, 1155, 1234
BsiHKAI GWGCWC 1 cut(s) 1145
BsiSI CCGG 2 cut(s) 281, 1201
BslFI GGGAC 1 cut(s) 1190
BslI CCNNNNNNNGG 4 cut(s) 120, 539, 1137, 1163
BsmAI GTCTC 2 cut(s) 1006, 1230
BsmFI GGGAC 1 cut(s) 1190
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 5 cut(s) 279, 369, 532, 1155, 1234
Bso31I GGTCTC 1 cut(s) 1006
Bsp1286I GDGCHC 1 cut(s) 1145
Bsp143I GATC 3 cut(s) 109, 607, 1161
Bsp68I TCGCGA 1 cut(s) 915
BspACI CCGC 1 cut(s) 1250
BspANI GGCC 5 cut(s) 279, 369, 532, 1155, 1234
BspCNI CTCAG 1 cut(s) 937
BspFNI CGCG 1 cut(s) 915
BspLI GGNNCC 3 cut(s) 161, 370, 475
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 3 cut(s) 104, 615, 1169
BspQI GCTCTTC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 1006
BsrI ACTGG 2 cut(s) 1111, 1235
BssECI CCNNGG 3 cut(s) 239, 1157, 1229
BssMI GATC 3 cut(s) 109, 607, 1161
BssT1I CCWWGG 1 cut(s) 1229
Bst4CI ACNGT 5 cut(s) 167, 539, 751, 780, 1310
Bst6I CTCTTC 3 cut(s) 208, 425, 750
BstC8I GCNNGC 2 cut(s) 1153, 1215
BstDEI CTNAG 3 cut(s) 57, 398, 945
BstF5I GGATG 2 cut(s) 17, 955
BstFNI CGCG 1 cut(s) 915
BstKTI GATC 3 cut(s) 112, 610, 1164
BstMAI GTCTC 2 cut(s) 1006, 1230
BstMBI GATC 3 cut(s) 109, 607, 1161
BstMWI GCNNNNNNNGC 4 cut(s) 94, 473, 660, 669
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 279, 1200
BstSFI CTRYAG 2 cut(s) 630, 1208
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 5 cut(s) 279, 369, 532, 1155, 1234
BtrI CACGTC 1 cut(s) 874
BtsCI GGATG 2 cut(s) 17, 955
BtsIMutI CAGTG 3 cut(s) 163, 544, 756
BtuMI TCGCGA 1 cut(s) 915
Cac8I GCNNGC 2 cut(s) 1153, 1215
CaiI CAGNNNCTG 1 cut(s) 1151
Cfr13I GGNCC 3 cut(s) 278, 368, 1154
Csp6I GTAC 3 cut(s) 441, 762, 1311
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 5 cut(s) 227, 234, 580, 1034, 1171
CviQI GTAC 3 cut(s) 441, 762, 1311
DdeI CTNAG 3 cut(s) 57, 398, 945
DpnI GATC 3 cut(s) 111, 609, 1163
DpnII GATC 3 cut(s) 109, 607, 1161
Eam1104I CTCTTC 3 cut(s) 208, 425, 750
EarI CTCTTC 3 cut(s) 208, 425, 750
EciI GGCGGA 1 cut(s) 1239
Eco130I CCWWGG 1 cut(s) 1229
Eco31I GGTCTC 1 cut(s) 1006
Eco57I CTGAAG 1 cut(s) 987
EcoO109I RGGNCCY 1 cut(s) 368
EcoRI GAATTC 3 cut(s) 13, 513, 1102
EcoT14I CCWWGG 1 cut(s) 1229
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 1229
FaeI CATG 5 cut(s) 230, 237, 583, 1037, 1174
FaqI GGGAC 1 cut(s) 1190
FatI CATG 5 cut(s) 226, 233, 579, 1033, 1170
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 2 cut(s) 4, 962
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 926
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 1170
HaeIII GGCC 5 cut(s) 279, 369, 532, 1155, 1234
HapII CCGG 2 cut(s) 281, 1201
Hin1II CATG 5 cut(s) 230, 237, 583, 1037, 1174
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 8 cut(s) 684, 710, 828, 929, 935, 941, 971, 1085
HpaII CCGG 2 cut(s) 281, 1201
Hpy166II GTNNAC 5 cut(s) 77, 176, 331, 637, 1313
Hpy188I TCNGA 7 cut(s) 12, 689, 784, 934, 940, 946, 1161
Hpy8I GTNNAC 5 cut(s) 77, 176, 331, 637, 1313
HpyAV CCTTC 5 cut(s) 31, 193, 286, 641, 737
HpyCH4III ACNGT 5 cut(s) 167, 539, 751, 780, 1310
HpyCH4IV ACGT 2 cut(s) 873, 882
HpyCH4V TGCA 9 cut(s) 26, 88, 264, 632, 740, 1031, 1075, 1170, 1279
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 473, 660, 669
HpyF3I CTNAG 3 cut(s) 57, 398, 945
HpySE526I ACGT 2 cut(s) 873, 882
Hsp92II CATG 5 cut(s) 230, 237, 583, 1037, 1174
Kzo9I GATC 3 cut(s) 109, 607, 1161
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 4 cut(s) 165, 473, 1140, 1148
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 273, 1018
MaeI CTAG 1 cut(s) 926
MaeII ACGT 2 cut(s) 873, 882
MaeIII GTNAC 1 cut(s) 674
MalI GATC 3 cut(s) 111, 609, 1163
MboI GATC 3 cut(s) 109, 607, 1161
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 1145
MluCI AATT 6 cut(s) 13, 105, 513, 1068, 1102, 1196
MlyI GAGTC 2 cut(s) 693, 923
MmeI TCCRAC 2 cut(s) 22, 403
Mph1103I ATGCAT 1 cut(s) 266
MroXI GAANNNNTTC 2 cut(s) 567, 1102
MseI TTAA 1 cut(s) 659
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 2 cut(s) 281, 1201
MspR9I CCNGG 2 cut(s) 281, 1202
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 451
MvnI CGCG 1 cut(s) 915
MwoI GCNNNNNNNGC 4 cut(s) 94, 473, 660, 669
NciI CCSGG 2 cut(s) 281, 1202
NdeII GATC 3 cut(s) 109, 607, 1161
NlaIII CATG 5 cut(s) 230, 237, 583, 1037, 1174
NlaIV GGNNCC 3 cut(s) 161, 370, 475
NruI TCGCGA 1 cut(s) 915
NsiI ATGCAT 1 cut(s) 266
NspI RCATGY 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 879
PctI GAATGC 1 cut(s) 451
PdmI GAANNNNTTC 2 cut(s) 567, 1102
PfeI GAWTC 6 cut(s) 710, 828, 935, 941, 971, 1085
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 2 cut(s) 692, 923
PpsI GAGTC 2 cut(s) 692, 923
PspN4I GGNNCC 3 cut(s) 161, 370, 475
PspPI GGNCC 3 cut(s) 278, 368, 1154
PstI CTGCAG 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 1151
PsuI RGATCY 1 cut(s) 607
PvuII CAGCTG 1 cut(s) 965
RruI TCGCGA 1 cut(s) 915
RsaI GTAC 3 cut(s) 442, 763, 1312
RsaNI GTAC 3 cut(s) 441, 762, 1311
RseI CAYNNNNRTG 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 659
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 3 cut(s) 109, 607, 1161
Sau96I GGNCC 3 cut(s) 278, 368, 1154
ScaI AGTACT 1 cut(s) 763
SchI GAGTC 2 cut(s) 693, 923
ScrFI CCNGG 2 cut(s) 281, 1202
SduI GDGCHC 1 cut(s) 1145
SfaNI GCATC 2 cut(s) 273, 1018
SfcI CTRYAG 2 cut(s) 630, 1208
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 98, 1132
SmoI CTYRAG 2 cut(s) 98, 1132
Sse9I AATT 6 cut(s) 13, 105, 513, 1068, 1102, 1196
SsiI CCGC 1 cut(s) 1250
SspMI CTAG 1 cut(s) 926
StyD4I CCNGG 2 cut(s) 279, 1200
StyI CCWWGG 1 cut(s) 1229
TaaI ACNGT 5 cut(s) 167, 539, 751, 780, 1310
TaiI ACGT 2 cut(s) 876, 885
TaqI TCGA 2 cut(s) 767, 1004
TaqII GACCGA 1 cut(s) 231
TasI AATT 6 cut(s) 13, 105, 513, 1068, 1102, 1196
TatI WGTACW 2 cut(s) 761, 1310
TfiI GAWTC 6 cut(s) 710, 828, 935, 941, 971, 1085
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TscAI CASTG 3 cut(s) 170, 544, 756
TseI GCWGC 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 3 cut(s) 170, 544, 756
XapI RAATTY 3 cut(s) 13, 513, 1102
XbaI TCTAGA 1 cut(s) 925
XceI RCATGY 1 cut(s) 237
XmnI GAANNNNTTC 2 cut(s) 567, 1102
XspI CTAG 1 cut(s) 926
ZrmI AGTACT 1 cut(s) 763
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.