AT3G58600

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013508
Physical Location & Seq
Reverse (-)
21668515 .. 21671292
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58600.1

Sequence Viewer

Length: 909 bp
ATGGATCAAGCTTCGTCTTCTTCGACTATGGAGGAAGACAAGAAGTCTTCCACTGATCCTGTGAATGTCGATGATAACGAGGAGAGAGAAGCTATAGAGATTGCTCTGTTCCAAGTGCCTGAATGCTATGTTTATTTGATACCTCCAAGGAAAACCGCAGCTTCGTACAGAGCAGATGAGTGGGACGTGAACAAATGGGCATGGGAAGGAGCTTTGAAAGTGGTGAGCAAAGGAGAAGAATGCATTATAAAACTAGTAGATAAAACCACAGGGGAACTTTACGCTCAGGCATTTCTAAGAGAGGGGGAACTTCATCCTGTAGAAGCAGTAATCGACAGTAGCAGATATTTTGTTCTCCGTGTTGAAGAAAAGATAGATGGTCGTGTTCGACATGCTTTTATCGGACTCGGATTCCGGGAAAGAACAGAAGCATATGATTTCCAAGCAGCACTACATGACCATATGAAGTATTTGAACAAGAAGAAAACAGCAGAAGAAATGGAACAACACTATCAGAACACTTCATCCGTTGATTACAGCTTAAAGGAAGGAGAAACCATTGTTCTCCAACTCAAAAATAGAAGCGATAAAGACAGCAAGTCAAAAACGGTAGAGAAGAGTCTGGGCAATCTCTCGTTGGAGGATAAAGGCAAGTCAATAGAAACCACCATTCCTTCAATCATCCTGCCACCTCCACCTCCGGGACCGCTTTCCCCTGTCACAACTGCTCAGAAGTCCCCGTCAAGTCTGCCGCCAAGCCTCAGCCTCCAAAGATCGTCTGAACAACAAGATTTAGATACAAAGCGAGAAGAAGAAGAAGAAGAGAAGAAAGAAGACCTAAAAGCCAAAGATGGAGGGGTTGAAGATGCACCAGATGATGACTTTGGAGATTTCCAAGCTGCGGGTTGA

Protein Analysis

302

Amino Acids

33.92

Weight (kDa)

4.75

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 32 - 192 2e-52 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58600
fragaria_vesca FvH4_6g27130
malus_domestica MD09G1239500.v1.1 MD17G1232600.v1.1
prunus_persica Prupe.2G061900_v2.0.a1 Prupe.2G061900_v2.0.a1
pyrus_communis pycom17g23530 pycom17g23550
rosa_chinensis RchiOBHm_Chr2g0128491 RchiOBHm_Chr2g0129091
rosa_laevigata RLG00000019054
rosa_roxburghii Rroxscaffold_2G00114880
rosa_rugosa Rorug02G0284600
rosa_samantha Rh2AG336800 Rh2BG344800 Rh2CG324200 Rh2DG361700
rosa_wichuraiana Rw2G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AciI CCGC 4 cut(s) 156, 707, 752, 902
AclWI GGATC 2 cut(s) 12, 50
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 701, 901
AgsI TTSAA 5 cut(s) 217, 365, 475, 678, 863
AhdI GACNNNNNGTC 2 cut(s) 43, 598
AhlI ACTAGT 1 cut(s) 253
AjiI CACGTC 1 cut(s) 187
AloI GAACNNNNNNTCC 2 cut(s) 509, 541
AluBI AGCT 6 cut(s) 11, 92, 161, 212, 540, 899
AluI AGCT 6 cut(s) 11, 92, 161, 212, 540, 899
AlwI GGATC 2 cut(s) 12, 50
ApeKI GCWGC 3 cut(s) 158, 446, 899
AspS9I GGNCC 1 cut(s) 704
AsuC2I CCSGG 2 cut(s) 416, 702
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 704
BbsI GAAGAC 4 cut(s) 9, 39, 42, 840
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 3 cut(s) 170, 458, 886
BccI CCATC 2 cut(s) 371, 845
BcnI CCSGG 2 cut(s) 416, 702
BcuI ACTAGT 1 cut(s) 253
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 2 cut(s) 93, 318
BisI GCNGC 4 cut(s) 159, 447, 752, 900
BlsI GCNGC 4 cut(s) 160, 448, 753, 901
Bme1390I CCNGG 2 cut(s) 416, 702
Bme18I GGWCC 1 cut(s) 704
BmeRI GACNNNNNGTC 2 cut(s) 43, 598
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 1 cut(s) 705
BmrFI CCNGG 2 cut(s) 416, 702
BmsI GCATC 1 cut(s) 856
BpiI GAAGAC 4 cut(s) 9, 39, 42, 840
Bpu10I CCTNAGC 2 cut(s) 285, 761
BpuMI CCSGG 2 cut(s) 416, 702
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 901
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 3 cut(s) 313, 524, 681
BseLI CCNNNNNNNGG 2 cut(s) 701, 901
BseMII CTCAG 3 cut(s) 299, 743, 775
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 170, 458, 886
BsiSI CCGG 2 cut(s) 415, 701
BslFI GGGAC 3 cut(s) 197, 717, 721
BslI CCNNNNNNNGG 2 cut(s) 701, 901
BsmFI GGGAC 3 cut(s) 197, 717, 721
BsmI GAATGC 2 cut(s) 128, 245
Bsp143I GATC 3 cut(s) 4, 55, 773
BspACI CCGC 4 cut(s) 156, 707, 752, 902
BspCNI CTCAG 3 cut(s) 298, 742, 774
BspLI GGNNCC 1 cut(s) 705
BspPI GGATC 2 cut(s) 12, 50
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 3 cut(s) 4, 55, 773
BssT1I CCWWGG 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 338, 610
Bst6I CTCTTC 2 cut(s) 611, 816
BstDEI CTNAG 4 cut(s) 285, 296, 729, 761
BstF5I GGATG 3 cut(s) 313, 524, 681
BstKTI GATC 3 cut(s) 7, 58, 776
BstMBI GATC 3 cut(s) 4, 55, 773
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 414, 700
BstSFI CTRYAG 2 cut(s) 93, 318
BstV1I GCAGC 3 cut(s) 170, 458, 886
BstV2I GAAGAC 4 cut(s) 9, 39, 42, 840
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 3 cut(s) 313, 524, 681
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 704
Csp6I GTAC 1 cut(s) 166
CviAII CATG 3 cut(s) 201, 392, 455
CviJI RGCY 9 cut(s) 11, 92, 161, 212, 540, 759, 765, 845, 899
CviKI_1 RGCY 9 cut(s) 11, 92, 161, 212, 540, 759, 765, 845, 899
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 4 cut(s) 285, 296, 729, 761
DpnI GATC 3 cut(s) 6, 57, 775
DpnII GATC 3 cut(s) 4, 55, 773
DriI GACNNNNNGTC 2 cut(s) 43, 598
Eam1104I CTCTTC 2 cut(s) 611, 816
Eam1105I GACNNNNNGTC 2 cut(s) 43, 598
EarI CTCTTC 2 cut(s) 611, 816
Eco130I CCWWGG 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 3 cut(s) 204, 395, 458
FaqI GGGAC 3 cut(s) 197, 717, 721
FatI CATG 3 cut(s) 200, 391, 454
FauI CCCGC 1 cut(s) 895
FauNDI CATATG 2 cut(s) 433, 462
Fnu4HI GCNGC 4 cut(s) 159, 447, 752, 900
FokI GGATG 3 cut(s) 300, 511, 668
Fsp4HI GCNGC 4 cut(s) 159, 447, 752, 900
FspBI CTAG 1 cut(s) 254
GluI GCNGC 4 cut(s) 159, 447, 752, 900
HapII CCGG 2 cut(s) 415, 701
Hin1II CATG 3 cut(s) 204, 395, 458
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 3 cut(s) 405, 411, 619
HpaII CCGG 2 cut(s) 415, 701
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 5 cut(s) 404, 410, 516, 732, 781
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 200, 542, 684
HpyCH4III ACNGT 2 cut(s) 338, 610
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 243, 869
HpyF3I CTNAG 4 cut(s) 285, 296, 729, 761
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 3 cut(s) 204, 395, 458
Kzo9I GATC 3 cut(s) 4, 55, 773
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 3 cut(s) 170, 458, 886
LweI GCATC 1 cut(s) 856
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 718
MalI GATC 3 cut(s) 6, 57, 775
MboI GATC 3 cut(s) 4, 55, 773
MlyI GAGTC 2 cut(s) 399, 628
MmeI TCCRAC 2 cut(s) 592, 618
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 1 cut(s) 542
MspI CCGG 2 cut(s) 415, 701
MspR9I CCNGG 2 cut(s) 416, 702
Mva1269I GAATGC 2 cut(s) 128, 245
NciI CCSGG 2 cut(s) 416, 702
NdeI CATATG 2 cut(s) 433, 462
NdeII GATC 3 cut(s) 4, 55, 773
NlaIII CATG 3 cut(s) 204, 395, 458
NlaIV GGNNCC 1 cut(s) 705
NmuCI GTSAC 1 cut(s) 718
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 1 cut(s) 395
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 75
PctI GAATGC 2 cut(s) 128, 245
PfeI GAWTC 1 cut(s) 411
PfoI TCCNGGA 2 cut(s) 414, 700
PkrI GCNGC 4 cut(s) 160, 448, 753, 901
PleI GAGTC 2 cut(s) 399, 627
PpsI GAGTC 2 cut(s) 399, 627
PsiI TTATAA 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 705
PspPI GGNCC 1 cut(s) 704
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 4 cut(s) 159, 447, 752, 900
Sau3AI GATC 3 cut(s) 4, 55, 773
Sau96I GGNCC 1 cut(s) 704
SchI GAGTC 2 cut(s) 399, 628
ScrFI CCNGG 2 cut(s) 416, 702
SfaNI GCATC 1 cut(s) 856
SfcI CTRYAG 2 cut(s) 93, 318
SinI GGWCC 1 cut(s) 704
SpeI ACTAGT 1 cut(s) 253
SsiI CCGC 4 cut(s) 156, 707, 752, 902
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 414, 700
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 2 cut(s) 338, 610
TaiI ACGT 1 cut(s) 189
TaqI TCGA 4 cut(s) 23, 69, 333, 388
TauI GCSGC 1 cut(s) 754
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 3 cut(s) 158, 446, 899
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 3 cut(s) 302, 479, 513
TspGWI ACGGA 2 cut(s) 347, 517
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 704
XceI RCATGY 1 cut(s) 395
XspI CTAG 1 cut(s) 254
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.