Rorug02G0284600

Protein of unknown function (DUF1681)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
30981537 .. 30981728
192 bp
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UTR
Exon/CDS
Intron
Rorug02G0284600.1

Sequence Viewer

Length: 192 bp
ATGCCCATCGTCGCCTCCGACTCCGCCAGCTCCCTGCCTGTCCTGAAACGCCGCATCGACGACACCAGTGATGTGGAGGTGCAGTCCAAGCTGAGTCGGAGCCAGCTGTTGCAGGTGGCGGTGAACTCGCCGGTGGTGCAGATGAGGATGTCAGATCTCGGTGGAGCAGCTGGCTTTGCTGAACATGAATAG

Protein Analysis

63

Amino Acids

6.73

Weight (kDa)

5.15

Isoelectric Point (pI)

76.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013508)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 103
AciI CCGC 3 cut(s) 24, 52, 119
AluBI AGCT 4 cut(s) 30, 91, 106, 170
AluI AGCT 4 cut(s) 30, 91, 106, 170
ApeKI GCWGC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 133
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 103
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 52, 168
BlsI GCNGC 2 cut(s) 53, 169
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 2 cut(s) 101, 158
BsiSI CCGG 1 cut(s) 131
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 3 cut(s) 24, 52, 119
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 101
BspMI ACCTGC 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 130
BssMI GATC 1 cut(s) 154
BstC8I GCNNGC 3 cut(s) 28, 104, 172
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 88, 136, 176
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 154
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 3 cut(s) 28, 104, 172
Cfr10I RCCGGY 1 cut(s) 130
CviAII CATG 1 cut(s) 185
CviJI RGCY 6 cut(s) 30, 91, 102, 106, 170, 174
CviKI_1 RGCY 6 cut(s) 30, 91, 102, 106, 170, 174
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EciI GGCGGA 1 cut(s) 13
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 52, 168
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 52, 168
GluI GCNGC 2 cut(s) 52, 168
HapII CCGG 1 cut(s) 131
Hin1II CATG 1 cut(s) 188
HinfI GANTC 2 cut(s) 20, 94
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 19, 99, 154
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 2 cut(s) 14, 62
HpyCH4V TGCA 3 cut(s) 82, 112, 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 136, 176
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 3 cut(s) 35, 99, 164
LpnPI CCDG 9 cut(s) 40, 47, 51, 56, 79, 98, 116, 144, 156
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 63
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MflI RGATCY 1 cut(s) 154
MlyI GAGTC 2 cut(s) 14, 103
MmeI TCCRAC 2 cut(s) 42, 77
MnlI CCTC 3 cut(s) 25, 70, 138
MspA1I CMGCKG 2 cut(s) 106, 170
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 88, 136, 176
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 101
PaqCI CACCTGC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PkrI GCNGC 2 cut(s) 53, 169
PleI GAGTC 2 cut(s) 14, 102
PpsI GAGTC 2 cut(s) 14, 102
PspN4I GGNNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 154
PvuII CAGCTG 2 cut(s) 106, 170
SatI GCNGC 2 cut(s) 52, 168
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 2 cut(s) 14, 103
SetI ASST 6 cut(s) 32, 81, 93, 108, 117, 172
SfaNI GCATC 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 130
SsiI CCGC 3 cut(s) 24, 52, 119
TaqI TCGA 1 cut(s) 57
TauI GCSGC 1 cut(s) 54
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 167
TspRI CASTG 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.