Rh2CG324200

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013508
Physical Location & Seq
Reverse (-)
41736569 .. 41740224
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG324200.1

Sequence Viewer

Length: 753 bp
ATGTTGGAGGTGATTTTTAAGTCTGAAGGTTATTTCAGGGCTGATGAATGGGATGTAAACAAATGGGTTTGGGAAGGAATATTGAAAGTCATTAGCAAAGGAGAAGATTGCATTATCAGACTTGAAGAGAAGAACACTGGTGAACTATATGCTCGGGCATTTTTACGAAAAGGAGAGCCGCATCCAGTTGAACCTGTAATTGATAGCAGCAGATACTTTGTTCTTCGTGTAGAGGAGAATATTGATGGTCGACTTCGGCATGCTTTCATTGGCCTAGGATTTCGAGAAAGAACAGAAGCTTATGATTTCCAAGCAGCCCTGCATGATCACATGAAATATCTAAACAAGAAGAAAACTGCGGAAGAGATGGAACAGAAATTTCAGCAAACTTCATCAGTTGATTACAGCTTAAAAGAGGGGGAGACTCTTGTACTGCAGTTAAAAAGTAAAAGTTCTGAAGGTGTGAAGTCCAAGCTCTCAGAGCAGGGAGTGAGCAATTCGCCACCCGCGAAAAAGAGTAACCAAAAAGAGTCCTTGATCTGTATCAAACCACCCCCACCTCCTCCAGGACCACTCTCTCCTTCTACGAATGTCCAGAAGTCTCCCTCAAACCCACCAAATCTGGCTCTTGGGGGAGCTTCTAAACTTCCAGAATCAGTGGCAGATGATTCCAAAGAAATGAATACTTCTGCAAATCAAAGCACGCAAGAAATACCAGATGATGACTTTGGGGATTTTCAGGCTGCTGTTTAA

Protein Analysis

250

Amino Acids

27.97

Weight (kDa)

5.43

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 9 - 148 5.9e-44 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58600
fragaria_vesca FvH4_6g27130
malus_domestica MD09G1239500.v1.1 MD17G1232600.v1.1
prunus_persica Prupe.2G061900_v2.0.a1 Prupe.2G061900_v2.0.a1
pyrus_communis pycom17g23530 pycom17g23550
rosa_chinensis RchiOBHm_Chr2g0128491 RchiOBHm_Chr2g0129091
rosa_laevigata RLG00000019054
rosa_roxburghii Rroxscaffold_2G00114880
rosa_rugosa Rorug02G0284600
rosa_samantha Rh2AG336800 Rh2BG344800 Rh2CG324200 Rh2DG361700
rosa_wichuraiana Rw2G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 250
AccII CGCG 1 cut(s) 509
AciI CCGC 3 cut(s) 179, 359, 507
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 2 cut(s) 45, 477
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 3 cut(s) 85, 125, 191
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 4 cut(s) 299, 408, 475, 638
AluI AGCT 4 cut(s) 299, 408, 475, 638
Alw26I GTCTC 2 cut(s) 416, 606
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 207, 314, 743
ApoI RAATTY 1 cut(s) 377
AspA2I CCTAGG 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 22, 152
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 569
AvrII CCTAGG 1 cut(s) 274
BbvI GCAGC 3 cut(s) 219, 326, 730
BccI CCATC 2 cut(s) 239, 361
BciT130I CCWGG 1 cut(s) 567
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 416, 606
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 434
BisI GCNGC 4 cut(s) 179, 208, 315, 744
BlnI CCTAGG 1 cut(s) 274
BlsI GCNGC 4 cut(s) 180, 209, 316, 745
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 569
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse1I ACTGG 2 cut(s) 142, 185
Bse8I GATNNNNATC 1 cut(s) 542
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 2 cut(s) 58, 181
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 2 cut(s) 142, 185
BseRI GAGGAG 2 cut(s) 248, 552
BseXI GCAGC 3 cut(s) 219, 326, 730
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 2 cut(s) 416, 606
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 2 cut(s) 325, 537
BspACI CCGC 3 cut(s) 179, 359, 507
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 491
BspFNI CGCG 1 cut(s) 509
BspMAI CTGCAG 1 cut(s) 438
BsrI ACTGG 2 cut(s) 142, 185
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 2 cut(s) 325, 537
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 567
Bst6I CTCTTC 2 cut(s) 120, 357
BstC8I GCNNGC 2 cut(s) 261, 704
BstDEI CTNAG 1 cut(s) 478
BstENI CCTNNNNNAGG 1 cut(s) 564
BstF5I GGATG 2 cut(s) 58, 181
BstFNI CGCG 1 cut(s) 509
BstKTI GATC 2 cut(s) 328, 540
BstMAI GTCTC 2 cut(s) 416, 606
BstMBI GATC 2 cut(s) 325, 537
BstMWI GCNNNNNNNGC 1 cut(s) 481
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 434
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 3 cut(s) 219, 326, 730
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 58, 181
BtsIMutI CAGTG 2 cut(s) 135, 663
Cac8I GCNNGC 2 cut(s) 261, 704
Cfr13I GGNCC 1 cut(s) 569
Csp6I GTAC 1 cut(s) 431
CviAII CATG 3 cut(s) 260, 323, 331
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 1 cut(s) 478
DpnI GATC 2 cut(s) 327, 539
DpnII GATC 2 cut(s) 325, 537
Eam1104I CTCTTC 2 cut(s) 120, 357
EarI CTCTTC 2 cut(s) 120, 357
Eco130I CCWWGG 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 2 cut(s) 45, 477
Eco88I CYCGRG 1 cut(s) 153
EcoNI CCTNNNNNAGG 1 cut(s) 564
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 263, 326, 334
FaiI YATR 6 cut(s) 148, 150, 261, 303, 324, 332
FatI CATG 3 cut(s) 259, 322, 330
FauI CCCGC 1 cut(s) 514
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 179, 208, 315, 744
FokI GGATG 2 cut(s) 65, 168
Fsp4HI GCNGC 4 cut(s) 179, 208, 315, 744
FspBI CTAG 1 cut(s) 275
GluI GCNGC 4 cut(s) 179, 208, 315, 744
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 1 cut(s) 273
Hin1II CATG 3 cut(s) 263, 326, 334
HincII GTYRAC 1 cut(s) 251
HindII GTYRAC 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 4 cut(s) 424, 530, 653, 668
HphI GGTGA 2 cut(s) 22, 152
Hpy166II GTNNAC 3 cut(s) 58, 143, 251
Hpy188I TCNGA 4 cut(s) 25, 119, 457, 481
Hpy188III TCNNGA 3 cut(s) 284, 595, 650
Hpy8I GTNNAC 3 cut(s) 58, 143, 251
HpyAV CCTTC 4 cut(s) 20, 68, 452, 591
HpyCH4V TGCA 4 cut(s) 111, 322, 436, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 481
HpyF3I CTNAG 1 cut(s) 478
Hsp92II CATG 3 cut(s) 263, 326, 334
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 325, 537
LmnI GCTCC 1 cut(s) 635
Lsp1109I GCAGC 3 cut(s) 219, 326, 730
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 518
MalI GATC 2 cut(s) 327, 539
MboI GATC 2 cut(s) 325, 537
MboII GAAGA 6 cut(s) 116, 137, 142, 215, 361, 374
MluCI AATT 3 cut(s) 198, 377, 496
MlyI GAGTC 2 cut(s) 418, 539
MnlI CCTC 5 cut(s) 226, 409, 570, 573, 616
MseI TTAA 4 cut(s) 18, 410, 440, 751
MspR9I CCNGG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 567
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 481
NdeII GATC 2 cut(s) 325, 537
NlaIII CATG 3 cut(s) 263, 326, 334
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PfeI GAWTC 2 cut(s) 653, 668
PfoI TCCNGGA 1 cut(s) 565
PkrI GCNGC 4 cut(s) 180, 209, 316, 745
PleI GAGTC 2 cut(s) 418, 538
PpsI GAGTC 2 cut(s) 418, 538
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspPI GGNCC 1 cut(s) 569
PstI CTGCAG 1 cut(s) 438
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SalI GTCGAC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 18, 410, 440, 751
SatI GCNGC 4 cut(s) 179, 208, 315, 744
Sau3AI GATC 2 cut(s) 325, 537
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 2 cut(s) 418, 539
ScrFI CCNGG 1 cut(s) 567
SetI ASST 9 cut(s) 12, 31, 196, 301, 410, 463, 477, 562, 640
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 434
SinI GGWCC 1 cut(s) 569
SphI GCATGC 1 cut(s) 263
Sse9I AATT 3 cut(s) 198, 377, 496
SsiI CCGC 3 cut(s) 179, 359, 507
SspI AATATT 2 cut(s) 81, 241
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 1 cut(s) 274
TaqI TCGA 2 cut(s) 250, 283
TasI AATT 3 cut(s) 198, 377, 496
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 2 cut(s) 653, 668
Tru1I TTAA 4 cut(s) 18, 410, 440, 751
Tru9I TTAA 4 cut(s) 18, 410, 440, 751
TscAI CASTG 2 cut(s) 142, 663
TseI GCWGC 3 cut(s) 207, 314, 743
TspDTI ATGAA 5 cut(s) 60, 256, 347, 381, 695
TspRI CASTG 2 cut(s) 142, 663
VpaK11BI GGWCC 1 cut(s) 569
XagI CCTNNNNNAGG 1 cut(s) 564
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 263
XmaJI CCTAGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.