Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013508

Physical Location & Seq

Genomic Coordinates Reverse (-)

7914842 .. 7918666

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G061900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCAGAAGGAAGAGGCGGCGCCAAATGATCAAGAAGAGAACGAAGCTGAAGCTCTGGAGCTTGTTCTCTTTCAAGTGCCTGAATGCTATGTCTACTTGATACCACCGAGGAAAAGTGCAGCTTCATACAGGGCTGATGAATGGGATGTAAACAATTGGGTATGGGAAGGGATATTGAAAGTAATCAGCAAAGGAGAAGAGTGCATTGTCAGACTTGAAGATAAGAACACCAGTGAACTATATGCTCGGGCTTTTTTGAGAAAAGGAGAGCCTCATCCAGTGGAACCTGTAATTGATAGCAGCAGATATTTTGTGCTACGTGTAGAGGAGAACATTGATGGTCGGCTTCGGCATGCTTTCATTGGCATAGGATTTCGAGAAAGAACAGAAGCATATGATTTCCAAGCAGCCTTGCATGATCACATGAAATATCTGGACAAAAAGAAAACTGCAGAAGAGATGGAGCAAAAGTTTCAGCAAACTTCCTTGGTTGATTACAGCTTAAAAGAAGGGGAGACTCTTGTACTACAATTAAAGAACAAAAGCGCTGAAATTGTCAAGTCCAAGGTTTCTGAGAACAATTCACCAGAGAAAAAGGCCAACCAAAAAGAGCCCTTGATTTGTATCAAACCACCACCACCTCCCCCAGGACCACTTTCACCGTCTACTGGTCAGAAGTCTCCCACAAACTTTCCCCCAAATCTCAATCTTCAGGGGGATTCTAACCACAAAGCCTCAGAATCAACAGAAGATGATTCAAAAGAATCAATTTCTTCTGGAAATGAAATCACTCAAGATATACCAGATGATGACTTTGGGGATTTTCAGACAGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

280

Amino Acids

31.58

Weight (kDa)

4.83

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58600
fragaria_vesca	FvH4_6g27130
malus_domestica	MD09G1239500.v1.1 MD17G1232600.v1.1
prunus_persica	Prupe.2G061900_v2.0.a1 Prupe.2G061900_v2.0.a1
pyrus_communis	pycom17g23530 pycom17g23550
rosa_chinensis	RchiOBHm_Chr2g0128491 RchiOBHm_Chr2g0129091
rosa_laevigata	RLG00000019054
rosa_roxburghii	Rroxscaffold_2G00114880
rosa_rugosa	Rorug02G0284600
rosa_samantha	Rh2AG336800 Rh2BG344800 Rh2CG324200 Rh2DG361700
rosa_wichuraiana	Rw2G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	2 cut(s)	93, 665
AciI	CCGC	1 cut(s)	17
AcuI	CTGAAG	2 cut(s)	69, 695
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	525
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	647, 668
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	74, 178, 218, 759
AjnI	CCWGG	1 cut(s)	646
AluBI	AGCT	6 cut(s)	47, 53, 61, 122, 501, 833
AluI	AGCT	6 cut(s)	47, 53, 61, 122, 501, 833
Alw26I	GTCTC	2 cut(s)	509, 684
Ama87I	CYCGRG	1 cut(s)	246
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	3 cut(s)	119, 300, 407
AspLEI	GCGC	2 cut(s)	22, 548
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	2 cut(s)	576, 651
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	131, 312, 419
BccI	CCATC	2 cut(s)	332, 454
BciT130I	CCWGG	1 cut(s)	648
BclI	TGATCA	2 cut(s)	28, 418
BcoDI	GTCTC	2 cut(s)	509, 684
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	2 cut(s)	23, 549
BisI	GCNGC	4 cut(s)	18, 120, 301, 408
BlsI	GCNGC	4 cut(s)	19, 121, 302, 409
Bme1390I	CCNGG	1 cut(s)	648
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	2 cut(s)	21, 285
BmrFI	CCNGG	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	777
BsaAI	YACGTR	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	623
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	4 cut(s)	107, 486, 564, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	647, 668
Bse1I	ACTGG	3 cut(s)	231, 278, 673
Bse8I	GATNNNNATC	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	648
BseDI	CCNNGG	4 cut(s)	107, 486, 564, 646
BseGI	GGATG	2 cut(s)	151, 274
BseJI	GATNNNNATC	1 cut(s)	623
BseLI	CCNNNNNNNGG	2 cut(s)	647, 668
BseMII	CTCAG	2 cut(s)	564, 750
BseNI	ACTGG	3 cut(s)	231, 278, 673
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	3 cut(s)	131, 312, 419
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	599
BshNI	GGYRCC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	647, 668
BsmAI	GTCTC	2 cut(s)	509, 684
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	599
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	28, 418
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	2 cut(s)	565, 749
BspLI	GGNNCC	2 cut(s)	21, 285
BspMAI	CTGCAG	1 cut(s)	454
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	231, 278, 673
BssECI	CCNNGG	4 cut(s)	107, 486, 564, 646
BssMI	GATC	2 cut(s)	28, 418
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	486, 564
Bst2UI	CCWGG	1 cut(s)	648
Bst4CI	ACNGT	1 cut(s)	663
Bst6I	CTCTTC	4 cut(s)	6, 30, 192, 450
BstACI	GRCGYC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	573, 736
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	151, 274
BstH2I	RGCGCY	2 cut(s)	23, 549
BstHHI	GCGC	2 cut(s)	22, 548
BstKTI	GATC	2 cut(s)	31, 421
BstMAI	GTCTC	2 cut(s)	509, 684
BstMBI	GATC	2 cut(s)	28, 418
BstNI	CCWGG	1 cut(s)	648
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	131, 312, 419
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	151, 274
BtsIMutI	CAGTG	2 cut(s)	238, 285
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	2 cut(s)	22, 548
Cfr13I	GGNCC	1 cut(s)	650
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	3 cut(s)	353, 416, 424
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	2 cut(s)	573, 736
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	2 cut(s)	30, 420
DpnII	GATC	2 cut(s)	28, 418
Eam1104I	CTCTTC	4 cut(s)	6, 30, 192, 450
EarI	CTCTTC	4 cut(s)	6, 30, 192, 450
Eco130I	CCWWGG	2 cut(s)	486, 564
Eco24I	GRGCYC	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	650
Eco47III	AGCGCT	1 cut(s)	547
Eco57I	CTGAAG	2 cut(s)	69, 695
Eco88I	CYCGRG	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	486, 564
EcoT38I	GRGCYC	1 cut(s)	615
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
ErhI	CCWWGG	2 cut(s)	486, 564
FaeI	CATG	3 cut(s)	356, 419, 427
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	3 cut(s)	352, 415, 423
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	2 cut(s)	28, 418
FblI	GTMKAC	2 cut(s)	93, 665
Fnu4HI	GCNGC	4 cut(s)	18, 120, 301, 408
FokI	GGATG	2 cut(s)	158, 261
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	4 cut(s)	18, 120, 301, 408
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	2 cut(s)	21, 547
GluI	GCNGC	4 cut(s)	18, 120, 301, 408
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	2 cut(s)	23, 549
HaeIII	GGCC	1 cut(s)	599
HhaI	GCGC	2 cut(s)	22, 548
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	356, 419, 427
Hin6I	GCGC	2 cut(s)	20, 546
HinP1I	GCGC	2 cut(s)	20, 546
HinfI	GANTC	5 cut(s)	517, 719, 740, 755, 764
HphI	GGTGA	2 cut(s)	576, 651
Hpy166II	GTNNAC	4 cut(s)	94, 151, 236, 666
Hpy188I	TCNGA	5 cut(s)	212, 574, 675, 739, 828
Hpy188III	TCNNGA	6 cut(s)	32, 56, 377, 434, 777, 794
Hpy8I	GTNNAC	4 cut(s)	94, 151, 236, 666
HpyAV	CCTTC	2 cut(s)	161, 503
HpyCH4III	ACNGT	1 cut(s)	663
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	5 cut(s)	4, 119, 204, 415, 452
HpyF3I	CTNAG	2 cut(s)	573, 736
HpySE526I	ACGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	356, 419, 427
HspAI	GCGC	2 cut(s)	20, 546
KasI	GGCGCC	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	28, 418
Kzo9I	GATC	2 cut(s)	28, 418
LmnI	GCTCC	2 cut(s)	58, 463
Lsp1109I	GCAGC	3 cut(s)	131, 312, 419
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	1 cut(s)	319
MalI	GATC	2 cut(s)	30, 420
MboI	GATC	2 cut(s)	28, 418
MboII	GAAGA	8 cut(s)	23, 47, 209, 230, 467, 701, 761, 765
MfeI	CAATTG	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	615
MluCI	AATT	6 cut(s)	154, 291, 530, 552, 580, 768
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	6 cut(s)	7, 102, 282, 319, 651, 745
MseI	TTAA	3 cut(s)	503, 533, 838
MspR9I	CCNGG	1 cut(s)	648
MunI	CAATTG	1 cut(s)	154
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	648
NarI	GGCGCC	1 cut(s)	20
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	2 cut(s)	28, 418
NlaIII	CATG	3 cut(s)	356, 419, 427
NlaIV	GGNNCC	2 cut(s)	21, 285
NspI	RCATGY	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	4 cut(s)	719, 740, 755, 764
PkrI	GCNGC	4 cut(s)	19, 121, 302, 409
PleI	GAGTC	1 cut(s)	511
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	511
Ppu21I	YACGTR	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	2 cut(s)	21, 285
PspPI	GGNCC	1 cut(s)	650
PstI	CTGCAG	1 cut(s)	454
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	503, 533, 838
SatI	GCNGC	4 cut(s)	18, 120, 301, 408
Sau3AI	GATC	2 cut(s)	28, 418
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	648
SduI	GDGCHC	1 cut(s)	615
SfcI	CTRYAG	1 cut(s)	450
SfoI	GGCGCC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	6 cut(s)	154, 291, 530, 552, 580, 768
SsiI	CCGC	1 cut(s)	17
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	1 cut(s)	646
StyI	CCWWGG	2 cut(s)	486, 564
TaaI	ACNGT	1 cut(s)	663
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	376
TasI	AATT	6 cut(s)	154, 291, 530, 552, 580, 768
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	4 cut(s)	719, 740, 755, 764
Tru1I	TTAA	3 cut(s)	503, 533, 838
Tru9I	TTAA	3 cut(s)	503, 533, 838
TscAI	CASTG	2 cut(s)	238, 285
TseI	GCWGC	3 cut(s)	119, 300, 407
TspDTI	ATGAA	5 cut(s)	114, 153, 349, 440, 798
TspRI	CASTG	2 cut(s)	238, 285
VpaK11BI	GGWCC	1 cut(s)	650
XagI	CCTNNNNNAGG	1 cut(s)	645
XceI	RCATGY	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	93, 665
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.