RchiOBHm_Chr2g0128491

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013508
Physical Location & Seq
Reverse (-)
43572871 .. 43576788
3918 bp
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UTR
Exon/CDS
Intron
PRQ50026

Sequence Viewer

Length: 810 bp
ATGGAGCAGGATCAGAAGATATTGAATGATCAAGACGACGCCGAAGTTGAGGCACTGGAGCTTGTGCTTTTCCAAGTCTCTGAATGCTACGTCTACTTGATACCACCCAGAAAAAGTGCAGCTTCGTACAGGGCTGATGAATGGGATGTAAACAAATGGGTTTGGGAAGGAATATTGAAAGTCATTAGCAAAGGAGAAGATTGCATTATCAGACTTGAAGAGAAGAGCACTGAGCCGCATCCAGTTGAACCTGTAATTGATAGCAGCAGATACTTTGTTCTTCGTGTAGAGGAGAATATTGATGGTCGACTTCGGCATGCTTTCATTGGCCTAGGATTTCGAGAAAGAACAGAAGCTTATGATTTCCAAGCAGCCCTGCATGATCACATGAAATATCTAAACAAGAAGAAAACTGCGGAAGAGATGGAACAGAAATTTCAGCAAACTTCATCAGTTGATTACAGCTTAAAAGAGGGGGAGACTCTTGTACTGCAGTTAAAAAGTAAAAGTTCTGAAGGTGTGAAGTCCAAGCTCTCAGAGCAGGGAGTGAGCAATTCGCCACCCGCGAAAAAGAGTAACCAAAAAGAGTCCTTGATCTGTATCAAACCACCACCACCTCCTCCAGGACCACTCTCTCCTTCTACGAATGTCCAGAAGTCTCCCTCAAACCCACCAAATCTGGCTCTGGAGGGTGCTTCTAAACTTCCAGAATCAATGGCAGATGATTCCAAAGAAATGAATACTTCTGCAAATCAAAGCACGCAAGAAATACCAGATGATGACTTTGGGGATTTTCAGGCTGCTGTTTAA

Protein Analysis

269

Amino Acids

30.19

Weight (kDa)

4.86

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 20 - 167 7.4e-45 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58600
fragaria_vesca FvH4_6g27130
malus_domestica MD09G1239500.v1.1 MD17G1232600.v1.1
prunus_persica Prupe.2G061900_v2.0.a1 Prupe.2G061900_v2.0.a1
pyrus_communis pycom17g23530 pycom17g23550
rosa_chinensis RchiOBHm_Chr2g0128491 RchiOBHm_Chr2g0129091
rosa_laevigata RLG00000019054
rosa_roxburghii Rroxscaffold_2G00114880
rosa_rugosa Rorug02G0284600
rosa_samantha Rh2AG336800 Rh2BG344800 Rh2CG324200 Rh2DG361700
rosa_wichuraiana Rw2G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 93, 307
AccII CGCG 1 cut(s) 566
AciI CCGC 3 cut(s) 236, 416, 564
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 534
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 2 cut(s) 128, 489
AfiI CCNNNNNNNGG 1 cut(s) 623
AgsI TTSAA 4 cut(s) 25, 178, 218, 248
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 5 cut(s) 61, 122, 356, 465, 532
AluI AGCT 5 cut(s) 61, 122, 356, 465, 532
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 3 cut(s) 82, 473, 663
AlwI GGATC 1 cut(s) 18
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 4 cut(s) 119, 264, 371, 800
ApoI RAATTY 1 cut(s) 434
AspA2I CCTAGG 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 626
AvaII GGWCC 1 cut(s) 626
AvrII CCTAGG 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 4 cut(s) 131, 276, 383, 787
BccI CCATC 2 cut(s) 296, 418
BciT130I CCWGG 1 cut(s) 624
BclI TGATCA 2 cut(s) 28, 382
BcoDI GTCTC 3 cut(s) 82, 473, 663
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 491
BisI GCNGC 5 cut(s) 120, 236, 265, 372, 801
BlnI CCTAGG 1 cut(s) 331
BlsI GCNGC 5 cut(s) 121, 237, 266, 373, 802
Bme1390I CCNGG 1 cut(s) 624
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 1 cut(s) 626
BmrFI CCNGG 1 cut(s) 624
BmsI GCATC 1 cut(s) 247
BpmI CTGGAG 3 cut(s) 77, 606, 707
BsaBI GATNNNNATC 1 cut(s) 599
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 623
Bse1I ACTGG 2 cut(s) 60, 242
Bse8I GATNNNNATC 1 cut(s) 599
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 2 cut(s) 151, 238
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 1 cut(s) 623
BseMII CTCAG 2 cut(s) 222, 549
BseNI ACTGG 2 cut(s) 60, 242
BseRI GAGGAG 2 cut(s) 305, 609
BseXI GCAGC 4 cut(s) 131, 276, 383, 787
BsgI GTGCAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 623
BsmAI GTCTC 3 cut(s) 82, 473, 663
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 4 cut(s) 10, 28, 382, 594
BspACI CCGC 3 cut(s) 236, 416, 564
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 223, 548
BspFNI CGCG 1 cut(s) 566
BspMAI CTGCAG 1 cut(s) 495
BspPI GGATC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 218
BsrI ACTGG 2 cut(s) 60, 242
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 4 cut(s) 10, 28, 382, 594
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 624
Bst6I CTCTTC 3 cut(s) 213, 218, 414
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 318, 761
BstDEI CTNAG 2 cut(s) 231, 535
BstENI CCTNNNNNAGG 1 cut(s) 621
BstF5I GGATG 2 cut(s) 151, 238
BstFNI CGCG 1 cut(s) 566
BstKTI GATC 4 cut(s) 13, 31, 385, 597
BstMAI GTCTC 3 cut(s) 82, 473, 663
BstMBI GATC 4 cut(s) 10, 28, 382, 594
BstMWI GCNNNNNNNGC 1 cut(s) 538
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 1 cut(s) 491
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 4 cut(s) 131, 276, 383, 787
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 2 cut(s) 151, 238
BtsIMutI CAGTG 2 cut(s) 53, 228
Cac8I GCNNGC 2 cut(s) 318, 761
Cfr13I GGNCC 1 cut(s) 626
CseI GACGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 127, 488
CviAII CATG 3 cut(s) 317, 380, 388
CviQI GTAC 2 cut(s) 127, 488
DdeI CTNAG 2 cut(s) 231, 535
DpnI GATC 4 cut(s) 12, 30, 384, 596
DpnII GATC 4 cut(s) 10, 28, 382, 594
Eam1104I CTCTTC 3 cut(s) 213, 218, 414
EarI CTCTTC 3 cut(s) 213, 218, 414
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 534
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 3 cut(s) 320, 383, 391
FaiI YATR 4 cut(s) 318, 360, 381, 389
FalI AAGNNNNNCTT 2 cut(s) 106, 138
FatI CATG 3 cut(s) 316, 379, 387
FauI CCCGC 1 cut(s) 571
FbaI TGATCA 2 cut(s) 28, 382
FblI GTMKAC 2 cut(s) 93, 307
Fnu4HI GCNGC 5 cut(s) 120, 236, 265, 372, 801
FokI GGATG 2 cut(s) 158, 225
Fsp4HI GCNGC 5 cut(s) 120, 236, 265, 372, 801
FspBI CTAG 1 cut(s) 332
GluI GCNGC 5 cut(s) 120, 236, 265, 372, 801
GsuI CTGGAG 3 cut(s) 77, 606, 707
HaeIII GGCC 1 cut(s) 330
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 3 cut(s) 320, 383, 391
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 4 cut(s) 481, 587, 710, 725
Hpy166II GTNNAC 3 cut(s) 94, 151, 308
Hpy188I TCNGA 5 cut(s) 15, 82, 212, 514, 538
Hpy188III TCNNGA 5 cut(s) 32, 341, 652, 686, 707
Hpy8I GTNNAC 3 cut(s) 94, 151, 308
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 161, 509, 648
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 5 cut(s) 119, 204, 379, 493, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 538
HpyF3I CTNAG 2 cut(s) 231, 535
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 3 cut(s) 320, 383, 391
Ksp22I TGATCA 2 cut(s) 28, 382
Kzo9I GATC 4 cut(s) 10, 28, 382, 594
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 2 cut(s) 4, 58
Lsp1109I GCAGC 4 cut(s) 131, 276, 383, 787
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 575
MalI GATC 4 cut(s) 12, 30, 384, 596
MboI GATC 4 cut(s) 10, 28, 382, 594
MboII GAAGA 7 cut(s) 28, 209, 230, 235, 272, 418, 431
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 3 cut(s) 255, 434, 553
MlyI GAGTC 2 cut(s) 475, 596
MnlI CCTC 7 cut(s) 43, 283, 466, 627, 630, 673, 682
MseI TTAA 3 cut(s) 467, 497, 808
MspR9I CCNGG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 624
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 538
NdeII GATC 4 cut(s) 10, 28, 382, 594
NlaIII CATG 3 cut(s) 320, 383, 391
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 563
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 710, 725
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 5 cut(s) 121, 237, 266, 373, 802
PleI GAGTC 2 cut(s) 475, 595
PpsI GAGTC 2 cut(s) 475, 595
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspPI GGNCC 1 cut(s) 626
PstI CTGCAG 1 cut(s) 495
RsaI GTAC 2 cut(s) 128, 489
RsaNI GTAC 2 cut(s) 127, 488
SalI GTCGAC 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 3 cut(s) 467, 497, 808
SatI GCNGC 5 cut(s) 120, 236, 265, 372, 801
Sau3AI GATC 4 cut(s) 10, 28, 382, 594
Sau96I GGNCC 1 cut(s) 626
SchI GAGTC 2 cut(s) 475, 596
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 1 cut(s) 230
SetI ASST 9 cut(s) 63, 93, 124, 253, 358, 467, 520, 534, 619
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 626
SphI GCATGC 1 cut(s) 320
Sse9I AATT 3 cut(s) 255, 434, 553
SsiI CCGC 3 cut(s) 236, 416, 564
SspI AATATT 2 cut(s) 174, 298
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 1 cut(s) 331
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 307, 340
TasI AATT 3 cut(s) 255, 434, 553
TatI WGTACW 1 cut(s) 487
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 2 cut(s) 710, 725
Tru1I TTAA 3 cut(s) 467, 497, 808
Tru9I TTAA 3 cut(s) 467, 497, 808
TscAI CASTG 2 cut(s) 60, 235
TseI GCWGC 4 cut(s) 119, 264, 371, 800
TspDTI ATGAA 5 cut(s) 153, 313, 404, 438, 752
TspRI CASTG 2 cut(s) 60, 235
VpaK11BI GGWCC 1 cut(s) 626
XagI CCTNNNNNAGG 1 cut(s) 621
XapI RAATTY 1 cut(s) 434
XceI RCATGY 1 cut(s) 320
XmaJI CCTAGG 1 cut(s) 331
XmiI GTMKAC 2 cut(s) 93, 307
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.