AT3G59490

Domain of unknown function (DUF4504)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012507
Physical Location & Seq
Reverse (-)
21984596 .. 21986351
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59490.4

Sequence Viewer

Length: 732 bp
ATGGAGGTTCCAAGCTCTGAGGAACTACTTCAGTTTCTGAGTTCTTGCCTCTCTCAGATCAAATGGAGACTCAAGAGCAATTCCAAACGCCGTCTCGAAATAGATGTTCTGGCATTATGCACAGGAATGAGACCAGTTGTGATGATTGACTATGGTGGAAAGATGCCTGAGCTACAGAATCGTTTGCTGTCACTTCTTGAGCTCATCCGAGAGGGTTTACCAGTTTTTAAAGATCTGAAGGTTATGGTTATAGAGGATATGATATACCTCATAAATGTAAGAAGCCTGCCCAAGTTTGTAAGCTCCAGCTTAGATTCAGAACCCGAGTTGTTCTTCATTGACTTGGAACAAGATCCTCCAAAGATGGTAACACAAAGCAAGGAAAGCAATCTGGGGATGCAGCTTAGATCGATTCAGAAGCTATTCTCTTCGACATTTCCTTTAGATGACAGCAATACTGATACCACTACGGTACTTGATGAGGCCAACTCTTCTCAGACTTCTTTATGCATTGATCTTAGCTGTTGTTTACAAGACACTAAAGTTACAATCCCAACCTTAAACGGATGGCTGCTGGACTATCCAGTTGTGTATCTATTTGGCACAGATCACATAGAAGAAGCAATCTACAACCTATCCACCAAATCCCTCCGCCTATTCAAAGTTCTAGTATGCAGGAATGGTACCACCGAGAAGGACTCTCATTTAGAAGAGCTAACAAGTGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4504

Protein Analysis

243

Amino Acids

27.54

Weight (kDa)

4.79

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4504 PF14953 15 - 239 2.2e-71 Domain of unknown function (DUF4504)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59490 AT3G59490 AT3G59490 AT3G59490
fragaria_vesca FvH4_4g10850 FvH4_4g10850
malus_domestica MD04G1042500.v1.1
prunus_persica Prupe.1G196900_v2.0.a1
pyrus_communis pycom04g03740
rosa_chinensis RchiOBHm_Chr4g0406631
rosa_multiflora Rmu_sc0002774.1_g000005
rosa_roxburghii Rroxscaffold_5G00351470
rosa_rugosa Rorug04G0072400 Rorug04G0072500
rosa_samantha Rh4AG139700 Rh4BG136700 Rh4CG146900 Rh4DG133900
rosa_wichuraiana Rw4G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 683
AciI CCGC 1 cut(s) 652
AclWI GGATC 1 cut(s) 347
AcuI CTGAAG 2 cut(s) 14, 257
AfaI GTAC 2 cut(s) 474, 685
AgsI TTSAA 1 cut(s) 661
AluBI AGCT 9 cut(s) 15, 172, 202, 303, 309, 403, 421, 522, 715
AluI AGCT 9 cut(s) 15, 172, 202, 303, 309, 403, 421, 522, 715
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 3 cut(s) 61, 98, 124
AlwI GGATC 1 cut(s) 347
AlwNI CAGNNNCTG 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 2 cut(s) 400, 571
Asp700I GAANNNNTTC 2 cut(s) 27, 422
Asp718I GGTACC 1 cut(s) 683
AvaI CYCGRG 1 cut(s) 323
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 412, 558
BccI CCATC 2 cut(s) 358, 561
BceAI ACGGC 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 61, 98, 124
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 173
BglII AGATCT 1 cut(s) 232
BisI GCNGC 2 cut(s) 401, 572
BlsI GCNGC 2 cut(s) 402, 573
BmeT110I CYCGRG 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 9, 685
BmsI GCATC 2 cut(s) 153, 387
BplI GAGNNNNNCTC 4 cut(s) 473, 505, 683, 715
BpmI CTGGAG 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 56, 218
Bsa29I ATCGAT 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 124
Bse1I ACTGG 3 cut(s) 134, 221, 584
BseCI ATCGAT 1 cut(s) 410
BseGI GGATG 3 cut(s) 204, 402, 572
BseMII CTCAG 5 cut(s) 9, 29, 68, 159, 509
BseNI ACTGG 3 cut(s) 134, 221, 584
BseXI GCAGC 2 cut(s) 412, 558
BshFI GGCC 1 cut(s) 485
BshNI GGYRCC 1 cut(s) 683
BshVI ATCGAT 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 323
BsmAI GTCTC 3 cut(s) 61, 98, 124
BsmBI CGTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 485
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 6 cut(s) 57, 232, 352, 407, 514, 607
BspACI CCGC 1 cut(s) 652
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 5 cut(s) 10, 30, 67, 160, 508
BspDI ATCGAT 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 9, 685
BspPI GGATC 1 cut(s) 347
BspQI GCTCTTC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 124
BsrI ACTGG 3 cut(s) 134, 221, 584
BssMI GATC 6 cut(s) 57, 232, 352, 407, 514, 607
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 3 cut(s) 433, 496, 705
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 8 cut(s) 18, 38, 54, 168, 310, 404, 495, 518
BstF5I GGATG 3 cut(s) 204, 402, 572
BstKTI GATC 6 cut(s) 60, 235, 355, 410, 517, 610
BstMAI GTCTC 3 cut(s) 61, 98, 124
BstMBI GATC 6 cut(s) 57, 232, 352, 407, 514, 607
BstMWI GCNNNNNNNGC 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 412, 558
BstX2I RGATCY 2 cut(s) 232, 352
BstYI RGATCY 2 cut(s) 232, 352
Bsu15I ATCGAT 1 cut(s) 410
BsuRI GGCC 1 cut(s) 485
BsuTUI ATCGAT 1 cut(s) 410
BtsCI GGATG 3 cut(s) 204, 402, 572
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 410
Csp6I GTAC 2 cut(s) 473, 684
CviQI GTAC 2 cut(s) 473, 684
DdeI CTNAG 8 cut(s) 18, 38, 54, 168, 310, 404, 495, 518
DpnI GATC 6 cut(s) 59, 234, 354, 409, 516, 609
DpnII GATC 6 cut(s) 57, 232, 352, 407, 514, 607
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 3 cut(s) 433, 496, 705
EarI CTCTTC 3 cut(s) 433, 496, 705
EciI GGCGGA 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 14, 257
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 98
FauNDI CATATG 1 cut(s) 728
Fnu4HI GCNGC 2 cut(s) 401, 572
FokI GGATG 3 cut(s) 191, 409, 579
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 401, 572
FspBI CTAG 1 cut(s) 668
GluI GCNGC 2 cut(s) 401, 572
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 1 cut(s) 485
HinfI GANTC 5 cut(s) 69, 178, 314, 412, 698
Hpy166II GTNNAC 2 cut(s) 218, 530
Hpy188I TCNGA 8 cut(s) 19, 39, 57, 209, 237, 319, 417, 498
Hpy188III TCNNGA 3 cut(s) 73, 95, 197
Hpy8I GTNNAC 2 cut(s) 218, 530
HpyAV CCTTC 2 cut(s) 232, 688
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4V TGCA 4 cut(s) 120, 400, 510, 675
HpyF10VI GCNNNNNNNGC 1 cut(s) 384
HpyF3I CTNAG 8 cut(s) 18, 38, 54, 168, 310, 404, 495, 518
KpnI GGTACC 1 cut(s) 687
Kzo9I GATC 6 cut(s) 57, 232, 352, 407, 514, 607
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 2 cut(s) 412, 558
LweI GCATC 2 cut(s) 153, 387
MaeI CTAG 1 cut(s) 668
MaeIII GTNAC 3 cut(s) 189, 367, 544
MalI GATC 6 cut(s) 59, 234, 354, 409, 516, 609
MboI GATC 6 cut(s) 57, 232, 352, 407, 514, 607
MboII GAAGA 5 cut(s) 325, 420, 483, 629, 722
MflI RGATCY 2 cut(s) 232, 352
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 63, 692
MnlI CCTC 8 cut(s) 13, 59, 205, 247, 278, 366, 475, 659
Mph1103I ATGCAT 1 cut(s) 512
MroXI GAANNNNTTC 2 cut(s) 27, 422
MseI TTAA 2 cut(s) 228, 560
MslI CAYNNNNRTG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 384
NdeI CATATG 1 cut(s) 728
NdeII GATC 6 cut(s) 57, 232, 352, 407, 514, 607
NlaIV GGNNCC 2 cut(s) 9, 685
NmuCI GTSAC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 512
PciSI GCTCTTC 1 cut(s) 705
PdmI GAANNNNTTC 2 cut(s) 27, 422
PfeI GAWTC 3 cut(s) 178, 314, 412
PkrI GCNGC 2 cut(s) 402, 573
PleI GAGTC 2 cut(s) 63, 692
PpsI GAGTC 2 cut(s) 63, 692
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 9, 685
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 232, 352
RsaI GTAC 2 cut(s) 474, 685
RsaNI GTAC 2 cut(s) 473, 684
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 2 cut(s) 228, 560
SatI GCNGC 2 cut(s) 401, 572
Sau3AI GATC 6 cut(s) 57, 232, 352, 407, 514, 607
SchI GAGTC 2 cut(s) 63, 692
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 2 cut(s) 153, 387
SfcI CTRYAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 71, 197
SmoI CTYRAG 2 cut(s) 71, 197
Sse9I AATT 1 cut(s) 79
SsiI CCGC 1 cut(s) 652
SspMI CTAG 1 cut(s) 668
SstI GAGCTC 1 cut(s) 204
TaaI ACNGT 1 cut(s) 472
TaqI TCGA 3 cut(s) 96, 410, 431
TasI AATT 1 cut(s) 79
TfiI GAWTC 3 cut(s) 178, 314, 412
Tru1I TTAA 2 cut(s) 228, 560
Tru9I TTAA 2 cut(s) 228, 560
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 2 cut(s) 400, 571
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 579
XmnI GAANNNNTTC 2 cut(s) 27, 422
XspI CTAG 1 cut(s) 668
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.